Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2369c_(-)_2649956_2650258
DateMon Aug 5 13:25:52 BST 2019
Unique Job IDb172c954529c95d7
SequenceVIVGLADRHG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.718 Y:55.003 Z:51.523
Model (left) based on template c3al0C_
Top template information
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c,linker,
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
Confidence and coverage
Confidence: 28.8% Coverage: 19%
19 residues ( 19% of your sequence) have been modelled with 28.8% confidence by the single highest scoring template.
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Warning: 57% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3al0C_
28.8 47
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c,linker,
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
2c2o5rA_
21.9 56
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase 1;
PDBTitle: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17)2 (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima3 at 2.5 a resolution
3c3afhA_
19.4 56
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase 2;
PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog
4c5o60S_
19.3 37
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l21;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
5c5tgtA_
18.9 44
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of glytamyl-trna synthetase glurs from pseudomonas2 aeruginosa
6c1g59A_
17.5 56
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: glutamyl-trna synthetase complexed with trna(glu).
7c2cfoA_
16.7 56
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: non-discriminating glutamyl-trna synthetase from2 thermosynechococcus elongatus in complex with glu
8d2goma1
14.2 58
Fold:Spectrin repeat-like
Superfamily:Efb C-domain-like
Family:Efb C-domain-like
9d2nojb1
13.8 67
Fold:Spectrin repeat-like
Superfamily:Efb C-domain-like
Family:Efb C-domain-like
10c2nojD_
13.8 67
PDB header:immune system
Chain: D: PDB Molecule:efb homologous protein;
PDBTitle: crystal structure of ehp / c3d complex
11c2ja2A_
13.1 44
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: mycobacterium tuberculosis glutamyl-trna synthetase
12c4griB_
12.8 63
PDB header:ligase
Chain: B: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of a glutamyl-trna synthetase glurs from borrelia2 burgdorferi bound to glutamic acid and zinc
13c1vw4N_
12.8 22
PDB header:ribosome
Chain: N: PDB Molecule:54s ribosomal protein l49, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
14c5mlcT_
12.7 44
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l21, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
15c3j3vR_
12.3 26
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l21;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
16c4ce4V_
11.8 6
PDB header:ribosome
Chain: V: PDB Molecule:mrpl21;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
17c3bboT_
10.6 44
PDB header:ribosome
Chain: T: PDB Molecule:ribosomal protein l21;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
18d2zjro1
10.6 47
Fold:L21p-like
Superfamily:L21p-like
Family:Ribosomal protein L21p
19c2c60A_
9.9 36
PDB header:transferase
Chain: A: PDB Molecule:human mitogen-activated protein kinase kinase kinase 3
PDBTitle: crystal structure of human mitogen-activated protein kinase kinase2 kinase 3 isoform 2 phox domain at 1.25 a resolution
20c5mmiS_
9.6 42
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l21, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
21d2j01v1
not modelled 8.9 26
Fold:L21p-like
Superfamily:L21p-like
Family:Ribosomal protein L21p
22c6b1zA_
not modelled 8.6 56
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of glutamate-trna synthetase from elizabethkingia2 anophelis
23c6jxaA_
not modelled 8.5 60
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase tel1;
PDBTitle: tel1 kinase compact monomer
24d2qamr1
not modelled 8.4 28
Fold:L21p-like
Superfamily:L21p-like
Family:Ribosomal protein L21p
25d1v5sa_
not modelled 7.7 64
Fold:TBP-like
Superfamily:KA1-like
Family:Kinase associated domain 1, KA1
26c5np1A_
not modelled 7.3 60
PDB header:transferase
Chain: A: PDB Molecule:serine-protein kinase atm;
PDBTitle: open protomer of human atm (ataxia telangiectasia mutated)
27d2zjra2
not modelled 6.5 44
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
28c2mitB_
not modelled 6.1 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
29c2mitA_
not modelled 6.0 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
30c2liyA_
not modelled 5.9 50
PDB header:hormone
Chain: A: PDB Molecule:epidermal patterning factor-like protein 9;
PDBTitle: plant peptide hormone regulating stomatal density
31c3i5wA_
not modelled 5.8 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5 (mutant r13h)
32c3i5wB_
not modelled 5.8 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5 (mutant r13h)
33c4e82B_
not modelled 5.6 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
34c4e82A_
not modelled 5.6 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of monomeric variant of human alpha-defensin 5, hd52 (glu21eme mutant)
35c5np0A_
not modelled 5.6 60
PDB header:signaling protein
Chain: A: PDB Molecule:serine-protein kinase atm;
PDBTitle: closed dimer of human atm (ataxia telangiectasia mutated)
36c5cuiE_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
37c1zmpA_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
38c1zmpB_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
39c2lxzA_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of the antimicrobial peptide human defensin 5
40c4e86D_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
41c4e86H_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: H: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
42c5cuiC_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
43c5cuiD_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
44c5cuiB_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
45c5cuiA_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
46c5cuiF_
not modelled 5.5 64
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 r28a mutant.
47c1zmpC_
not modelled 5.4 64
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
48c4rbxA_
not modelled 5.4 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (glu21arg mutant)
49c2h1zA_
not modelled 5.4 54
PDB header:toxin
Chain: A: PDB Molecule:hybrid atracotoxin;
PDBTitle: structure of a dual-target spider toxin
50c4e83A_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
51c5cujD_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
52c5cumB_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
53c5cujB_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
54c5cujE_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
55c5cumC_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
56c5cujC_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
57c5cujF_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
58c5cumA_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 1.
59c5cujA_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human defensin-5 y27a mutant crystal form 2.
60c4e86G_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: G: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
61c4e86E_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: E: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
62c4e86F_
not modelled 5.3 64
PDB header:antimicrobial protein
Chain: F: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
63d2j01d2
not modelled 5.3 56
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
64c4e86L_
not modelled 5.2 64
PDB header:antimicrobial protein
Chain: L: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
65c4e86A_
not modelled 5.1 64
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
66c4e83B_
not modelled 5.1 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)
67c4e86C_
not modelled 5.1 64
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
68c4e86B_
not modelled 5.1 64
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)

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