Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2370c_(-)_2650255_2651568
DateMon Aug 5 13:25:52 BST 2019
Unique Job ID24fbcc49fe377483
SequenceVVLPKPTPRG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.656 Y:54.598 Z:38.235
Model (left) based on template c3onqB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:regulator of polyketide synthase expression;
PDBTitle: crystal structure of regulator of polyketide synthase expression2 bad_0249 from bifidobacterium adolescentis
Confidence and coverage
Confidence:100.0% Coverage: 56%
245 residues ( 56% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3onqB_
100.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:regulator of polyketide synthase expression;
PDBTitle: crystal structure of regulator of polyketide synthase expression2 bad_0249 from bifidobacterium adolescentis
2d1ntca_
97.3 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
3d1fipa_
97.2 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
4c1umqA_
97.1 35
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
5d1umqa_
97.1 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
6c3m1eA_
97.0 20
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
7c5fo5A_
97.0 23
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator metr;
PDBTitle: structure of the dna-binding domain of escherichia coli methionine2 biosynthesis regulator metr
8c5z4yB_
96.9 18
PDB header:dna binding protein
Chain: B: PDB Molecule:cys regulon transcriptional activator;
PDBTitle: crystal structure of pacysb ntd domain with space group p4
9c2m8gX_
96.8 23
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
10c2esnC_
96.8 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa
11d1etxa_
96.8 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
12d1etob_
96.8 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
13d2esna1
96.8 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LysR-like transcriptional regulators
14c1iz1B_
96.7 20
PDB header:dna binding protein
Chain: B: PDB Molecule:lysr-type regulatory protein;
PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
15c3t1bB_
96.7 14
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: crystal structure of the full-length aphb n100e variant
16c3ispA_
96.7 15
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis
17c5y9sD_
96.7 23
PDB header:transcription
Chain: D: PDB Molecule:vv2_1132;
PDBTitle: crystal structure of vv2_1132, a lysr family transcriptional regulator
18d1b9ma1
96.6 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of molybdate-dependent transcriptional regulator ModE
19c1zljE_
96.5 16
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
20c3fzjC_
96.5 23
PDB header:transcription regulator
Chain: C: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: tsar low resolution crystal structure, tetragonal form
21c1b9nA_
not modelled 96.4 11
PDB header:transcription
Chain: A: PDB Molecule:protein (mode);
PDBTitle: regulator from escherichia coli
22c3k1nB_
not modelled 96.4 20
PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of full-length benm
23c1g2hA_
not modelled 96.3 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
24d1g2ha_
not modelled 96.3 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
25d1ixca1
not modelled 96.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LysR-like transcriptional regulators
26c4pzjA_
not modelled 96.3 25
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: 1.60 angstrom resolution crystal structure of a transcriptional2 regulator of the lysr family from eggerthella lenta dsm 2243
27c5y2vA_
not modelled 96.3 18
PDB header:transcription
Chain: A: PDB Molecule:rubisco operon transcriptional regulator;
PDBTitle: strcutrue of the full-length ccmr complexed with 2-og from2 synechocystis pcc6803
28c5m7nA_
not modelled 96.2 25
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
29c4l5eA_
not modelled 96.2 22
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
30c5ydwB_
not modelled 96.1 23
PDB header:dna binding protein
Chain: B: PDB Molecule:cell density-dependent motility repressor;
PDBTitle: full-length structure of hypt from salmonella typhimuriuma2 (hypochlorite-specific lysr-type transcriptional regulator)
31c3e7lD_
not modelled 96.1 13
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
32c3fzvC_
not modelled 96.1 11
PDB header:transcription regulator
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa
33c3hhgF_
not modelled 95.9 21
PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.
34c3hugA_
not modelled 95.8 19
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
35c6g4rE_
not modelled 95.7 26
PDB header:transcription
Chain: E: PDB Molecule:hydrogen peroxide-inducible genes activator;
PDBTitle: corynebacterium glutamicum oxyr c206s mutant, h2o2-bound
36c4lfuA_
not modelled 95.5 22
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
37d1or7a1
not modelled 95.4 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
38c3qp5C_
not modelled 95.3 10
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
39d1a04a1
not modelled 95.3 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
40d1rp3a2
not modelled 95.3 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
41c1ojlD_
not modelled 95.2 30
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
42c2ijlB_
not modelled 95.1 7
PDB header:transcription
Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor;
PDBTitle: the structure of a putative mode from agrobacterium tumefaciens.
43c6c03A_
not modelled 95.0 17
PDB header:transcription
Chain: A: PDB Molecule:putative rna polymerase ecf-subfamily sigma factor;
PDBTitle: the crystal structure streptomyces venezuelae rsbn-bldn complex
44c3sztB_
not modelled 94.9 14
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
45c2rnjA_
not modelled 94.3 15
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
46c3vepA_
not modelled 94.3 13
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
47d1l3la1
not modelled 94.1 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
48c6dvdF_
not modelled 94.1 19
PDB header:transferase/dna
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigl;
PDBTitle: crystal structure of mycobacterium tuberculosis transcription2 initiation complex(ecf sigma factor l) with 6 nt spacer and bromine3 labelled in position "-11
49d1p4wa_
not modelled 94.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
50d1fsea_
not modelled 94.0 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
51c5fgmA_
not modelled 94.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigr;
PDBTitle: streptomyces coelicolor sigr region 4
52c6jqsA_
not modelled 93.8 8
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: structure of transcription factor, gere
53c2o8xA_
not modelled 93.8 14
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
54c2krfB_
not modelled 93.8 15
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
55c2q0oA_
not modelled 93.6 21
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
56c1h0mD_
not modelled 93.2 18
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein trar bound2 to its autoinducer and to its target dna
57d1yioa1
not modelled 93.2 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
58c2e1cA_
not modelled 93.0 7
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
59c5zx3F_
not modelled 92.9 21
PDB header:transcription
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigh;
PDBTitle: mycobacterium tuberculosis rna polymerase holoenzyme with ecf sigma2 factor sigma h
60c6in7B_
not modelled 92.7 14
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: crystal structure of algu in complex with muca(cyto)
61c3t0yA_
not modelled 92.7 22
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
62c1x3uA_
not modelled 92.6 11
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
63c6ideA_
not modelled 92.6 13
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator luxr family;
PDBTitle: crystal structure of the vibrio cholera vqma-ligand-dna complex2 provides molecular mechanisms for drug design
64c2cfxD_
not modelled 92.6 5
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
65d2cg4a1
not modelled 92.3 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
66c5o8yG_
not modelled 92.0 21
PDB header:transcription
Chain: G: PDB Molecule:transcriptional regulatory protein rcsb;
PDBTitle: conformational dynamism for dna interaction in salmonella typhimurium2 rcsb response regulator.
67c1or7A_
not modelled 92.0 12
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
68c4x6gG_
not modelled 91.8 23
PDB header:dna binding protein
Chain: G: PDB Molecule:oxyr;
PDBTitle: full-length oxyr c199d from pseudomonas aeruginosa
69c2vbzA_
not modelled 91.8 12
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
70d1xsva_
not modelled 91.6 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
71d2jn6a1
not modelled 91.6 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
72d1i1ga1
not modelled 91.5 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
73d1s7oa_
not modelled 91.5 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
74c2lfwA_
not modelled 91.2 15
PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
75c3vdoA_
not modelled 91.0 13
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
76c2jpcA_
not modelled 90.8 23
PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
77c3cloC_
not modelled 90.7 20
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
78c2cg4B_
not modelled 90.7 12
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
79c2l4aA_
not modelled 90.7 6
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
80c2dbbA_
not modelled 90.6 23
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
81c4czdA_
not modelled 90.5 15
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
82c2e7xA_
not modelled 90.5 15
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
83c2p6tH_
not modelled 90.0 16
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
84d2cfxa1
not modelled 90.0 3
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
85c1i1gA_
not modelled 89.4 9
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
86c4if4A_
not modelled 89.1 16
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
87c3i4pA_
not modelled 89.0 15
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
88c2q1zA_
not modelled 88.9 8
PDB header:transcription
Chain: A: PDB Molecule:rpoe, ecf sige;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
89c5f64C_
not modelled 88.9 16
PDB header:transcription regulator
Chain: C: PDB Molecule:positive transcription regulator evga;
PDBTitle: putative positive transcription regulator (sensor evgs) from shigella2 flexneri
90d2cyya1
not modelled 88.6 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
91c5z7iC_
not modelled 88.1 18
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
92c1u78A_
not modelled 87.9 7
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
93d2coba1
not modelled 87.6 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
94c3mzyA_
not modelled 87.4 13
PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
95c4cxfA_
not modelled 86.9 15
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor cnrh;
PDBTitle: structure of cnrh in complex with the cytosolic domain of cnry
96c4pcqC_
not modelled 86.9 12
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
97c3hyiA_
not modelled 86.3 15
PDB header:transcription regulator
Chain: A: PDB Molecule:protein duf199/whia;
PDBTitle: crystal structure of full-length duf199/whia from thermatoga maritima
98c5wurB_
not modelled 86.3 10
PDB header:metal binding protein
Chain: B: PDB Molecule:ecf rna polymerase sigma factor sigw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
99c2gqqB_
not modelled 85.4 12
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
100d1smyf2
not modelled 84.8 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
101c4czdD_
not modelled 84.8 18
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
102c2rn7A_
not modelled 84.2 16
PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
103c5hevC_
not modelled 84.1 16
PDB header:transcription
Chain: C: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the beryllofluoride-activated liar from2 enterococcus faecium
104c5ae5A_
not modelled 84.0 17
PDB header:transcription
Chain: A: PDB Molecule:lysr-type regulatory protein;
PDBTitle: structures of inactive and activated dntr provide conclusive evidence2 for the mechanism of action of lysr transcription factors
105c5uxxC_
not modelled 83.9 15
PDB header:dna binding protein/unknown function
Chain: C: PDB Molecule:rna polymerase sigma factor;
PDBTitle: co-crystal structure of the sigma factor rpoe in complex with the2 anti-sigma factor nepr from bartonella quintana
106c2ia0A_
not modelled 83.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
107c3klnC_
not modelled 82.8 13
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
108c4yn8A_
not modelled 79.7 15
PDB header:dna binding protein
Chain: A: PDB Molecule:response regulator chra;
PDBTitle: crystal structure of response regulator chra in heme-sensing two2 component system
109c6amaO_
not modelled 79.6 17
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
110c1zn2A_
not modelled 79.5 15
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
111c1rp3G_
not modelled 79.2 14
PDB header:transcription
Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia);
PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma complex, sigma-2 28/flgm
112d1ttya_
not modelled 79.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
113c5xe7A_
not modelled 78.6 15
PDB header:dna binding protein
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigj;
PDBTitle: crystal structure of mycobacterium tuberculosis extracytoplasmic2 function sigma factor sigj
114d1ku7a_
not modelled 77.3 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
115c4ch7A_
not modelled 76.3 21
PDB header:transcription
Chain: A: PDB Molecule:nird-like protein;
PDBTitle: crystal structure of the siroheme decarboxylase nirdl
116d1i3ja_
not modelled 74.9 19
Fold:DNA-binding domain of intron-encoded endonucleases
Superfamily:DNA-binding domain of intron-encoded endonucleases
Family:DNA-binding domain of intron-encoded endonucleases
117c3c3wB_
not modelled 74.6 12
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
118c5chhA_
not modelled 74.5 16
PDB header:transcription
Chain: A: PDB Molecule:arac family transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator cdpr from pseudomonas2 aeruginosa
119d1q06a_
not modelled 74.2 16
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
120d2auwa1
not modelled 74.1 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite