Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2376c_(cfp2)_2655619_2656125
DateMon Aug 5 13:25:53 BST 2019
Unique Job IDc042518f2de9896a
SequenceMKMVKSIAAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.051 Y:40.308 Z:40.031
Model (left) based on template c2rsxA_
Top template information
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
Confidence and coverage
Confidence: 59.0% Coverage: 32%
53 residues ( 32% of your sequence) have been modelled with 59.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Warning: 52% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rsxA_
59.0 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
2c3k7cC_
49.5 16
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
3c3robC_
45.6 10
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
4c4iffC_
45.6 19
PDB header:cell cycle
Chain: C: PDB Molecule:fusion of phage phi29 gp7 protein and cell division protein
PDBTitle: structural organization of ftsb, a transmembrane protein of the2 bacterial divisome
5c1nohB_
44.0 19
PDB header:viral protein
Chain: B: PDB Molecule:head morphogenesis protein;
PDBTitle: the structure of bacteriophage phi29 scaffolding protein2 gp7 after prohead assembly
6c6bjuD_
41.2 12
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
7c3fkaD_
38.7 17
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
8c4fczB_
37.3 12
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
9d2rcda1
36.3 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
10d2owpa1
35.9 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
11c4hzbE_
35.8 21
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
12c5lfiA_
28.6 20
PDB header:immune system
Chain: A: PDB Molecule:lactococcin-a immunity protein;
PDBTitle: lactococcin a immunity protein
13d2o8ra1
28.5 16
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
14d1xdpa1
28.2 16
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
15c4c1oA_
24.9 50
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylosidase;
PDBTitle: geobacillus thermoglucosidasius gh family 52 xylosidase
16d3b7ca1
22.2 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
17d3b8la1
22.1 25
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
18c3mtuE_
21.2 22
PDB header:contractile protein
Chain: E: PDB Molecule:capsid assembly scaffolding protein,tropomyosin alpha-1
PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
19c2iabB_
20.0 22
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
20c4gb5A_
19.6 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
21c5d9rA_
not modelled 16.8 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
22d2a90a1
not modelled 16.4 22
Fold:WWE domain
Superfamily:WWE domain
Family:WWE domain
23c3bb9D_
not modelled 15.5 15
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
24c5n02B_
not modelled 15.0 24
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
25d3ef8a1
not modelled 14.3 42
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
26d2chca1
not modelled 14.2 25
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
27d2rfra1
not modelled 13.9 38
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
28d2fp7b1
not modelled 13.5 27
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
29c3a76B_
not modelled 13.4 25
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
30d3ebya1
not modelled 11.1 33
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
31c5wlqA_
not modelled 10.9 19
PDB header:motor protein
Chain: A: PDB Molecule:capsid assembly scaffolding protein,myosin-7,microtubule-
PDBTitle: crystal structure of amino acids 1677-1755 of human beta cardiac2 myosin fused to gp7 and eb1
32d1befa_
not modelled 10.1 36
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
33c3e90B_
not modelled 10.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:ns3 protease;
PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h
34c3lkwA_
not modelled 9.8 27
PDB header:viral protein,hydrolase
Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and
PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active site2 mutant
35c4m9mA_
not modelled 9.8 36
PDB header:viral protein
Chain: A: PDB Molecule:ns2b-ns3 protease;
PDBTitle: ns2b-ns3 protease from dengue virus at ph 8.5
36d2ijob1
not modelled 9.7 27
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
37c2lmzA_
not modelled 9.7 18
PDB header:toxin
Chain: A: PDB Molecule:conotoxin im17a;
PDBTitle: solution nmr structure of the novel conotoxin im23a from conus2 imperialis
38c5lc0B_
not modelled 9.6 36
PDB header:hydrolase
Chain: B: PDB Molecule:ns2b-ns3 protease,ns2b-ns3 protease;
PDBTitle: crystal structure of zika virus ns2b-ns3 protease in complex with a2 boronate inhibitor
39c2yolA_
not modelled 9.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease subunit ns2b, serine protease ns3;
PDBTitle: west nile virus ns2b-ns3 protease in complex with 3,4-2 dichlorophenylacetyl-lys-lys-gcma
40d3blza1
not modelled 8.5 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
41c4z9nB_
not modelled 8.2 20
PDB header:transport protein
Chain: B: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: abc transporter / periplasmic binding protein from brucella ovis with2 glutathione bound
42c4lehA_
not modelled 8.2 14
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
43c5ldrA_
not modelled 8.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-d-galactosidase;
PDBTitle: crystal structure of a cold-adapted dimeric beta-d-galactosidase from2 paracoccus sp. 32d strain in complex with galactose
44c5dudB_
not modelled 8.1 33
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
45d2fomb1
not modelled 8.1 36
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
46d2ba0g2
not modelled 8.0 23
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
47d3stda_
not modelled 7.9 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
48d1v74a_
not modelled 7.4 38
Fold:Colicin D/E5 nuclease domain
Superfamily:Colicin D/E5 nuclease domain
Family:Colicin D nuclease domain
49c4dnyA_
not modelled 7.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:metalloprotease stce;
PDBTitle: crystal structure of enterohemorrhagic e. coli stce(132-251)
50d1idpa_
not modelled 7.2 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
51c5u9oD_
not modelled 7.1 23
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
52d2k0bx1
not modelled 7.1 57
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
53c2jy8A_
not modelled 6.6 57
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
54d3e99a1
not modelled 6.6 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
55c2jh9A_
not modelled 6.5 18
PDB header:viral protein
Chain: A: PDB Molecule:vp4 core protein;
PDBTitle: the structure of bluetongue virus vp4 reveals a2 multifunctional rna-capping production-line
56d3d9ra1
not modelled 6.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
57c3f7eB_
not modelled 5.9 14
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
58c6co6B_
not modelled 5.5 33
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
59c2phcB_
not modelled 5.3 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
60d3eipa_
not modelled 5.3 40
Fold:FKBP-like
Superfamily:Colicin E3 immunity protein
Family:Colicin E3 immunity protein
61d1poib_
not modelled 5.3 28
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
62c4y4vB_
not modelled 5.2 11
PDB header:hydrolase
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structure of helicobacter pylori csd6 in the d-ala-bound state
63c5fv6B_
not modelled 5.1 13
PDB header:cell adhesion
Chain: B: PDB Molecule:kpflo11a1;
PDBTitle: kpflo11 presents a novel member of the flo11 family with a2 unique recognition pattern for homophilic interactions
64d2cu6a1
not modelled 5.1 37
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
65c3dukD_
not modelled 5.0 16
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution

Binding site prediction 

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