Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2377c_(mbtH)_2656225_2656440
DateMon Aug 5 13:25:53 BST 2019
Unique Job ID3650ba0221caa959
SequenceVSTNPFDDDN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.538 Y:42.099 Z:28.954
Model (left) based on template c2khrA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein mbth;
PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage:100%
71 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2khrA_



100.0 99
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein mbth;
PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis
2d2gpfa1



100.0 46
Fold:MbtH/L9 domain-like
Superfamily:MbtH-like
Family:MbtH-like
3c2lpdA_



100.0 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a mbth-like protein from burkholderia2 pseudomallei, the etiological agent responsible for melioidosis,3 seattle structural genomics center for infectious disease target4 bupsa.13472.b
4c5wmmB_



100.0 69
PDB header:biosynthetic protein
Chain: B: PDB Molecule:mbth homologue;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
5c5ja1B_



100.0 42
PDB header:ligase
Chain: B: PDB Molecule:enterobactin biosynthesis protein ybdz;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 mbth-like protein ybdz
6c5u89B_



100.0 52
PDB header:hydrolase/inhibitor
Chain: B: PDB Molecule:mbth domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
7d2pstx1



100.0 46
Fold:MbtH/L9 domain-like
Superfamily:MbtH-like
Family:MbtH-like
8c4gr5B_



97.1 49
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
9c6n8eA_



90.8 56
PDB header:hydrolase
Chain: A: PDB Molecule:holo-obif1;
PDBTitle: crystal structure of holo-obif1, a five domain nonribosomal peptide2 synthetase from burkholderia diffusa
10c5xswA_



41.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of an archaeal chitinase in the substrate-complex2 form (p63)
11d2b6ca1



25.9 16
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:BC3264-like
12d1iqqa_



13.6 17
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
13c5jvvA_



12.5 17
PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-glucosyltransferase;
PDBTitle: crystal structure and characterization an elongating gh family 162 beta-1,3-glucosyltransferase
14c5ydxA_



12.2 26
PDB header:signaling protein
Chain: A: PDB Molecule:ww domain with ppxy motif;
PDBTitle: nmr structure of yap1-2 ww1 domain with lats1 ppxy motif complex
15d1f8ab1



12.1 22
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
16d1j0ha2



11.7 26
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
17c6j69A_



11.2 18
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
18c3cf5G_



10.7 31
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:50s ribosomal protein l13;
PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans
19d2zjrg1



10.7 31
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
20d1nmva1



10.6 22
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
21c4wfaG_



not modelled 10.3 23
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l13;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
22c3j3wJ_



not modelled 10.3 31
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l13;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
23c5o60K_



not modelled 10.3 31
PDB header:ribosome
Chain: K: PDB Molecule:50s ribosomal protein l13;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
24d2glia5



not modelled 10.1 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
25c1vw4H_



not modelled 10.0 31
PDB header:ribosome
Chain: H: PDB Molecule:54s ribosomal protein l23, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
26d1k9ra_



not modelled 9.9 26
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
27c1ymzA_



not modelled 9.8 19
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
28c4e5xH_



not modelled 9.7 57
PDB header:immune system/transcription
Chain: H: PDB Molecule:early e3 18.5 kda glycoprotein;
PDBTitle: crystal structure of a complex between the human adenovirus type 2 e3-2 19k protein and mhc class i molecule hla-a2/tax
29c4l1bB_



not modelled 9.5 26
PDB header:signaling protein/transferase/inhibitor
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: crystal structure of p110alpha complexed with nish2 of p85alpha
30d2ho2a1



not modelled 9.5 46
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
31c2zajA_



not modelled 9.4 20
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1)
32d2ilxa1



not modelled 9.3 28
Fold:LigT-like
Superfamily:LigT-like
Family:2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain
33c4v19N_



not modelled 9.2 31
PDB header:ribosome
Chain: N: PDB Molecule:mitoribosomal protein ul13m, mrpl13;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
34d1pina1



not modelled 9.2 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
35c2yclA_



not modelled 9.1 18
PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron-sulfur
PDBTitle: complete structure of the corrinoid,iron-sulfur protein including2 the n-terminal domain with a 4fe-4s cluster
36c2mdjA_



not modelled 9.1 15
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd2;
PDBTitle: solution structure of ww domain with polyproline stretch (pp2ww) of2 hypb
37c2ftcH_



not modelled 9.0 31
PDB header:ribosome
Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
38d2ysca1



not modelled 8.7 50
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
39c3mc2C_



not modelled 8.7 22
PDB header:lyase inhibitor
Chain: C: PDB Molecule:inhibitor of carbonic anhydrase;
PDBTitle: crystal structure of the murine inhibitor of carbonic anhydrase
40c3nicA_



not modelled 8.5 33
PDB header:hydrolase/dna
Chain: A: PDB Molecule:eco29kir;
PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f
41c3d5bN_



not modelled 8.5 38
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l13;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
42c2ysbA_



not modelled 8.4 28
PDB header:protein binding
Chain: A: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1)
43c2kykA_



not modelled 7.9 27
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif
44c1tk7A_



not modelled 7.9 24
PDB header:signaling protein
Chain: A: PDB Molecule:cg4244-pb;
PDBTitle: nmr structure of ww domains (ww3-4) from suppressor of2 deltex
45d2j01n1



not modelled 7.8 38
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
46d1g0wa2



not modelled 7.8 35
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
47c5mlcL_



not modelled 7.6 46
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l13, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
48c2lawA_



not modelled 7.5 20
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:yorkie homolog;
PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide
49d2itka1



not modelled 7.5 31
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
50c2lb0A_



not modelled 7.5 13
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
51d1u6ra2



not modelled 7.4 40
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
52c3bboL_



not modelled 7.3 46
PDB header:ribosome
Chain: L: PDB Molecule:ribosomal protein l13;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
53c3pfyA_



not modelled 7.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 5;
PDBTitle: the catalytic domain of human otud5
54c1e0mA_



not modelled 7.2 19
PDB header:de novo protein
Chain: A: PDB Molecule:wwprototype;
PDBTitle: prototype ww domain
55c3l4hA_



not modelled 7.2 17
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1;
PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1
56d2f21a1



not modelled 7.0 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
57c4o7kA_



not modelled 7.0 21
PDB header:antitumor protein
Chain: A: PDB Molecule:protein osa;
PDBTitle: crystal structure of oncogenic suppression activity protein - a2 plasmid fertility inhibition factor
58d1m15a2



not modelled 6.9 40
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
59c2ysgA_



not modelled 6.9 16
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
60d2jmfa1



not modelled 6.8 27
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
61c2lazA_



not modelled 6.8 13
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
62d1iama2



not modelled 6.7 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
63c1wr4A_



not modelled 6.7 25
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
64c2ai4A_



not modelled 6.7 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein so1698;
PDBTitle: structure of protein of unknown function so1698 from shewanella2 oneidensis
65d1i8gb_



not modelled 6.6 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
66c2n8tA_



not modelled 6.5 25
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
67c2djyA_



not modelled 6.5 27
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
68c3bvsA_



not modelled 6.4 31
PDB header:hydrolase
Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd;
PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd
69d1dota2



not modelled 6.4 19
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
70c1ce2A_



not modelled 6.3 19
PDB header:metal transport
Chain: A: PDB Molecule:protein (lactoferrin);
PDBTitle: structure of diferric buffalo lactoferrin at 2.5a resolution
71d1b1xa2



not modelled 6.3 25
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
72c5iroD_



not modelled 6.3 33
PDB header:immune system/transcription
Chain: D: PDB Molecule:e3 19 kda protein;
PDBTitle: crystal structure of a complex between the human adenovirus type 4 e3-2 19k protein and mhc class molecule hla-a2/tax
73c2dx0B_



not modelled 6.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:phospholipase c, gamma 2;
PDBTitle: crystal structure of the n-terminal sh2 domain of mouse2 phospholipase c-gamma 2
74d1qh4a2



not modelled 6.2 35
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
75c1qk1H_



not modelled 6.1 25
PDB header:transferase (creatine kinase)
Chain: H: PDB Molecule:creatine kinase, ubiquitous mitochondrial;
PDBTitle: crystal structure of human ubiquitous mitochondrial creatine kinase
76c2l4jA_



not modelled 6.0 21
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
77c2vncB_



not modelled 6.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
78c1yiuA_



not modelled 6.0 27
PDB header:ligase
Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase;
PDBTitle: itch e3 ubiquitin ligase ww3 domain
79c1lfgA_



not modelled 6.0 25
PDB header:transferrin
Chain: A: PDB Molecule:lactoferrin;
PDBTitle: structure of diferric human lactoferrin
80d2e45a1



not modelled 5.9 67
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
81d1dota1



not modelled 5.9 19
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
82c3t0oA_



not modelled 5.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease t2;
PDBTitle: crystal structure analysis of human rnase t2
83d1qk1a2



not modelled 5.9 25
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
84d2fkia1



not modelled 5.8 22
Fold:Secretion chaperone-like
Superfamily:YjbR-like
Family:YjbR-like
85c2yscA_



not modelled 5.8 38
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3
86c2kxqA_



not modelled 5.7 16
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf2;
PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide
87c4nn7A_



not modelled 5.7 38
PDB header:cytokine/cytokine receptor
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: cytokine receptor complex - crystal form 2
88c4rohA_



not modelled 5.7 27
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: crystal structure of tandem ww domains of itch in complex with txnip2 peptide
89c1ryxA_



not modelled 5.6 19
PDB header:metal transport
Chain: A: PDB Molecule:ovotransferrin;
PDBTitle: crystal structure of hen serum transferrin in apo- form
90c6acvA_



not modelled 5.6 14
PDB header:dna binding protein
Chain: A: PDB Molecule:methyl-cpg-binding domain-containing protein 11;
PDBTitle: the solution nmr structure of mbd domain
91d1vrpa2



not modelled 5.5 30
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
92c5ydyA_



not modelled 5.4 20
PDB header:signaling protein
Chain: A: PDB Molecule:ww2 domain and ppxy motif complex;
PDBTitle: nmr structure of yap1-2 ww2 domain with lats1 ppxy motif complex
93d1crka2



not modelled 5.4 25
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
94c3j9eD_



not modelled 5.2 17
PDB header:viral protein
Chain: D: PDB Molecule:vp5;
PDBTitle: atomic structure of a non-enveloped virus reveals ph sensors for a2 coordinated process of cell entry
95c2kq0A_



not modelled 5.2 43
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
96c2ysfA_



not modelled 5.1 20
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
97c2yshA_



not modelled 5.1 21
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
98d2c5ra1



not modelled 5.1 31
Fold:Phage replication organizer domain
Superfamily:Phage replication organizer domain
Family:Phage replication organizer domain
99c2hauA_



not modelled 5.0 25
PDB header:metal transport
Chain: A: PDB Molecule:serotransferrin;
PDBTitle: apo-human serum transferrin (non-glycosylated)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite