Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2387_(-)_2680775_2682028
DateMon Aug 5 13:25:54 BST 2019
Unique Job ID2827b829edbd4051
SequenceMLHEFWVNFT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.869 Y:37.312 Z:54.073
Model (left) based on template c4cz8A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:na+/h+ antiporter, putative;
PDBTitle: structure of the sodium proton antiporter panhap from2 pyrococcus abyssii at ph 8.
Confidence and coverage
Confidence: 55.4% Coverage: 35%
145 residues ( 35% of your sequence) have been modelled with 55.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4cz8A_



55.4 13
PDB header:membrane protein
Chain: A: PDB Molecule:na+/h+ antiporter, putative;
PDBTitle: structure of the sodium proton antiporter panhap from2 pyrococcus abyssii at ph 8.
2c4bwzA_



55.1 14
PDB header:transport protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: crystal structure of the sodium proton antiporter, napa
3c5bz3A_



55.1 14
PDB header:transport protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: crystal structure of sodium proton antiporter napa in outward-facing2 conformation.
4d1kpla_



44.7 22
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
5c4czbB_



41.9 17
PDB header:membrane protein
Chain: B: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: structure of the sodium proton antiporter mjnhap1 from2 methanocaldococcus jannaschii at ph 8.
6d2bgwa1



36.0 13
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
7c2ht2B_



30.8 22
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
8c2mutA_



28.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-1;
PDBTitle: solution structure of the f231l mutant ercc1-xpf dimerization region
9d2a1jb1



27.7 18
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
10c6hu9r_



26.7 33
PDB header:oxidoreductase/electron transport
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
11c6gctA_



26.1 18
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
12d1x2ia1



25.6 12
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
13d1v54e_



25.5 33
Fold:alpha-alpha superhelix
Superfamily:Cytochrome c oxidase subunit E
Family:Cytochrome c oxidase subunit E
14c2y69R_



25.3 33
PDB header:electron transport
Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
15d1otsa_



23.6 22
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
16c5a40C_



23.4 16
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
17d2fyma2



17.7 39
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
18c3c1zA_



16.8 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna integrity scanning protein disa;
PDBTitle: structure of the ligand-free form of a bacterial dna damage sensor2 protein
19d2al1a2



14.1 25
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
20c2lyhA_



13.3 12
PDB header:dna binding protein
Chain: A: PDB Molecule:fanconi anemia-associated protein of 24 kda;
PDBTitle: structure of faap24 residues 141-215
21d2akza2



not modelled 12.1 32
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
22c4r1iB_



not modelled 12.0 18
PDB header:membrane protein
Chain: B: PDB Molecule:aminobenzoyl-glutamate transporter;
PDBTitle: structure and function of neisseria gonorrhoeae mtrf illuminates a2 class of antimetabolite efflux pumps
23c6c62D_



not modelled 11.8 43
PDB header:hydrolase
Chain: D: PDB Molecule:atzg;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme.
24c4bxoA_



not modelled 11.5 4
PDB header:hydrolase/dna
Chain: A: PDB Molecule:fanconi anemia group m protein;
PDBTitle: architecture and dna recognition elements of the fanconi anemia fancm-2 faap24 complex
25c4n7wA_



not modelled 11.0 10
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
26c6humC_



not modelled 10.7 16
PDB header:proton transport
Chain: C: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 3;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
27c5a43B_



not modelled 10.6 21
PDB header:transport protein
Chain: B: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
28d2dy1a3



not modelled 9.4 31
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
29d1nkza_



not modelled 8.7 21
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
30d1pdza2



not modelled 8.1 38
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
31c2m46A_



not modelled 8.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase, putative;
PDBTitle: solution nmr structure of sacol0876 from staphylococcus aureus col,2 nesg target zr353 and csgid target idp00841
32c4kt5C_



not modelled 8.0 38
PDB header:transcription regulator
Chain: C: PDB Molecule:grla;
PDBTitle: structure of grlr-grla complex
33c4bxoB_



not modelled 7.3 7
PDB header:hydrolase/dna
Chain: B: PDB Molecule:fanconi anemia-associated protein of 24 kda;
PDBTitle: architecture and dna recognition elements of the fanconi anemia fancm-2 faap24 complex
34d1ijda_



not modelled 7.3 21
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
35c6c6lN_



not modelled 7.2 6
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
36c2ka1B_



not modelled 6.8 31
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
37c2ka2A_



not modelled 6.8 31
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
38c2ka2B_



not modelled 6.8 31
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
39c2ka1A_



not modelled 6.8 31
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
40c2momC_



not modelled 6.7 24
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
41c2momB_



not modelled 6.7 24
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
42c4ky0B_



not modelled 6.3 23
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
43c2ecfA_



not modelled 6.2 31
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidyl peptidase iv;
PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia
44c6oitG_



not modelled 6.0 50
PDB header:plant protein
Chain: G: PDB Molecule:protein chromatin remodeling 35;
PDBTitle: cryoem structure of arabidopsis ddr' complex (drd1 peptide-dms3-rdm1)
45c2j5dA_



not modelled 5.6 30
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting protein 3;
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid bicelles
46c3f0iA_



not modelled 5.5 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: arsenate reductase from vibrio cholerae.
47c6a69A_



not modelled 5.4 10
PDB header:structural protein
Chain: A: PDB Molecule:plasma membrane calcium-transporting atpase 1;
PDBTitle: cryo-em structure of a p-type atpase
48d2aq0a1



not modelled 5.2 7
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like

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Transmembrane helix prediction 

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