Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2389c_(rpfD)_2683258_2683722
DateMon Aug 5 13:25:54 BST 2019
Unique Job IDb7a8b9cdfb0de630
SequenceMTPGLLTTAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.573 Y:46.017 Z:36.670
Model (left) based on template c1xsfA_
Top template information
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 67%
103 residues ( 67% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 61% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1xsfA_
100.0 43
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
2c4ow1A_
100.0 60
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
3d1xsfa1
100.0 49
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
4c3eo5A_
100.0 46
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
5c5e27B_
100.0 44
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
6d1fkqa_
97.9 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
7c2fbdB_
97.9 26
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
8d1hfxa_
97.8 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
9d1yroa1
97.8 24
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
10d1b9oa_
97.8 24
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
11d1f6sa_
97.8 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
12c2z2fA_
97.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme
13d1iiza_
97.7 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
14d1alca_
97.6 24
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
15d1jsea_
97.6 29
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
16d1gd6a_
97.5 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
17d1lsga1
97.5 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
18c2goiC_
97.5 29
PDB header:cell adhesion, sugar binding protein
Chain: C: PDB Molecule:sperm lysozyme-like protein 1;
PDBTitle: crystal structure of mouse sperm c-type lysozyme-like protein 1
19d1ghla_
97.5 29
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
20d2vb1a1
97.5 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
21d1juga_
not modelled 97.5 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
22d1qqya_
not modelled 97.5 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
23d1hhla_
not modelled 97.4 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
24d2eqla_
not modelled 97.2 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
25d1lmqa_
not modelled 97.2 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
26d1ivma_
not modelled 97.2 34
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
27d2nwdx1
not modelled 97.2 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
28c3w6dB_
not modelled 96.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
29c3bkhA_
not modelled 96.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
30d1gbsa_
not modelled 96.7 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
31d1qsaa2
not modelled 96.5 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
32c2y8pA_
not modelled 96.2 29
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
33c3gxkB_
not modelled 95.8 27
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
34c4cfoB_
not modelled 95.8 29
PDB header:hydrolase
Chain: B: PDB Molecule:mltc;
PDBTitle: structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
35c3mgwA_
not modelled 95.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
36c4oz9A_
not modelled 95.4 22
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
37c4xp8A_
not modelled 94.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
38c6cfcA_
not modelled 87.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of soluble lytic transglycosylase cj0843 of2 campylobacter jejuni in complex with bulgecin a
39c6fcqA_
not modelled 87.6 27
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic murein transglycosylase;
PDBTitle: the x-ray structure of lytic transglycosylase slt inactive mutant2 e503q from pseudomonas aeruginosa in complex with bulgecin a
40c1slyA_
not modelled 87.3 25
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
41c3ct5A_
not modelled 77.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
42c4anrA_
not modelled 68.6 21
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
43c4nooA_
not modelled 61.6 33
PDB header:immune system
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: molecular mechanism for self-protection against type vi secretion2 system in vibrio cholerae
44d1qusa_
not modelled 61.4 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
45d1am7a_
not modelled 59.8 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Lambda lysozyme
46c5anzA_
not modelled 55.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
47d1eh9a2
not modelled 51.2 22
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
48c3csqC_
not modelled 45.9 17
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
49c2dqaA_
not modelled 22.9 31
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of tapes japonica lysozyme
50c4fdyA_
not modelled 20.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
51c1p9cA_
not modelled 19.8 25
PDB header:ligand binding protein
Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: nmr solution structure of the c-terminal ubiquitin-2 interacting motif of the proteasome subunit s5a
52c4pwaA_
not modelled 19.8 18
PDB header:electron transport
Chain: A: PDB Molecule:putative cytochrome c;
PDBTitle: crystal structure of the c-type cytochrome soru from sinorhizobium2 meliloti
53c2kukA_
not modelled 18.0 38
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
54c3vdlB_
not modelled 13.4 17
PDB header:cell invasion
Chain: B: PDB Molecule:circumsporozoite (cs) protein;
PDBTitle: crystal structure of circumsporozoite protein atsr domain, p43212 form
55c4oltA_
not modelled 10.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:chitosanase;
PDBTitle: chitosanase complex structure
56c3h3mB_
not modelled 10.0 21
PDB header:structural genomics
Chain: B: PDB Molecule:flagellar protein flit;
PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica
57d2pf1a2
not modelled 9.0 37
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
58c2mn1A_
not modelled 8.8 38
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
59c2ofeA_
not modelled 8.7 29
PDB header:sugar binding protein
Chain: A: PDB Molecule:sclerotium rolfsii lectin;
PDBTitle: the crystal structure of sclerotium rolfsii lectin in complex with n-2 acetyl-d-glucosamine
60d2hfva1
not modelled 8.5 17
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:RPA1041-like
61d1ss3a_
not modelled 8.1 43
Fold:Toxic hairpin
Superfamily:Pollen allergen ole e 6
Family:Pollen allergen ole e 6
62c2ml7A_
not modelled 7.7 41
PDB header:unknown function
Chain: A: PDB Molecule:specific abundant protein 3;
PDBTitle: ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
63c6ch2E_
not modelled 7.7 36
PDB header:structural protein
Chain: E: PDB Molecule:flagellar hook-associated protein 2,flagellar protein flit;
PDBTitle: crystal structure of the cytoplasmic domain of flha and flit-flid2 complex
64d1ay7b_
not modelled 7.5 25
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
65c1cwvA_
not modelled 7.3 38
PDB header:structural protein
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein
66c5bq9B_
not modelled 7.1 45
PDB header:unknown function, structural genomics
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg1496 legionella2 pneumophila subsp. pneumophila
67c2guzO_
not modelled 7.1 8
PDB header:chaperone, protein transport
Chain: O: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: structure of the tim14-tim16 complex of the mitochondrial protein2 import motor
68c1wqbA_
not modelled 7.0 26
PDB header:toxin
Chain: A: PDB Molecule:aptotoxin vii;
PDBTitle: three-dimensional solution strucutre of aptotoxin vii, from2 the venom of a trap-door spider
69c1jjzA_
not modelled 6.8 50
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
70c1k48A_
not modelled 6.8 50
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
71c4uf6L_
not modelled 6.7 33
PDB header:hydrolase
Chain: L: PDB Molecule:nuclear factor related to kappa-b-binding protein;
PDBTitle: uch-l5 in complex with ubiquitin-propargyl bound to an activating2 fragment of ino80g
72c4ttnA_
not modelled 6.6 50
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
73c4ttmA_
not modelled 6.4 50
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
74c2lurA_
not modelled 6.3 60
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
75c2khbA_
not modelled 6.2 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
76c4dq5B_
not modelled 6.1 33
PDB header:membrane protein
Chain: B: PDB Molecule:membrane protein phi6 p5wt;
PDBTitle: structural investigation of bacteriophage phi6 lysin (wt)
77c3nkzD_
not modelled 6.0 36
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:flagellar protein flit;
PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081
78c1orxA_
not modelled 5.9 60
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
79c3j6vU_
not modelled 5.8 20
PDB header:ribosome
Chain: U: PDB Molecule:28s ribosomal protein s21, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
80c3a7mA_
not modelled 5.8 33
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:flagellar protein flit;
PDBTitle: structure of flit, the flagellar type iii chaperone for flid
81c2gj0A_
not modelled 5.8 25
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
82c4ttoA_
not modelled 5.7 50
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
83c3jb9g_
not modelled 5.7 30
PDB header:rna binding protein/rna
Chain: G: PDB Molecule:small nuclear ribonucleoprotein sm d2;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
84c3e4hA_
not modelled 5.7 50
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
85d1dx5i3
not modelled 5.7 63
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
86c2gyaZ_
not modelled 5.6 40
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l32;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
87c5foeA_
not modelled 5.6 20
PDB header:transferase
Chain: A: PDB Molecule:gdp-fucose protein o-fucosyltransferase 2,thrombospondin-1;
PDBTitle: crystal structure of the c. elegans protein o-fucosyltransferase 22 (cepofut2) double mutant (r298k-r299k) in complex with gdp and the3 human tsr1 from thrombospondin 1
88c1hznA_
not modelled 5.6 14
PDB header:hormone/growth factor
Chain: A: PDB Molecule:cholecystokinin type a receptor;
PDBTitle: nmr solution structure of the third extracellular loop of2 the cholecystokinin a receptor
89c3l0iA_
not modelled 5.5 21
PDB header:protein binding/protein transport
Chain: A: PDB Molecule:drra;
PDBTitle: complex structure of sidm/drra with the wild type rab1
90c5kp0A_
not modelled 5.4 33
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein flit,flagellum-specific atp synthase;
PDBTitle: recognition and targeting mechanisms by chaperones in flagella2 assembly and operation
91c4wybJ_
not modelled 5.1 19
PDB header:contractile protein/protein binding
Chain: J: PDB Molecule:bud site selection protein 6;
PDBTitle: structure of the bud6 flank domain in complex with actin

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