Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2393_(-)_2687138_2687983
DateMon Aug 5 13:25:55 BST 2019
Unique Job ID4ea7908f046c9755
SequenceVTAPATMQSA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.807 Y:37.958 Z:41.322
Model (left) based on template c5zt7A_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:sirohydrochlorin ferrochelatase;
PDBTitle: sirb from bacillus subtilis with co2+
Confidence and coverage
Confidence:100.0% Coverage: 81%
228 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5zt7A_



100.0 26
PDB header:biosynthetic protein
Chain: A: PDB Molecule:sirohydrochlorin ferrochelatase;
PDBTitle: sirb from bacillus subtilis with co2+
2c2xvzA_



100.0 18
PDB header:metal binding protein
Chain: A: PDB Molecule:chelatase, putative;
PDBTitle: cobalt chelatase cbik (periplasmatic) from desulvobrio2 vulgaris hildenborough (co-crystallized with cobalt)
3d1qgoa_



100.0 19
Fold:Chelatase-like
Superfamily:Chelatase
Family:Cobalt chelatase CbiK
4c2jh3C_



100.0 24
PDB header:ribosomal protein
Chain: C: PDB Molecule:ribosomal protein s2-related protein;
PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains
5c4ccsA_



100.0 22
PDB header:unknown function
Chain: A: PDB Molecule:cbix;
PDBTitle: the structure of cbix, the terminal enzyme for biosynthesis2 of siroheme in denitrifying bacteria
6d2hk6a1



99.9 16
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
7d1tjna_



99.9 21
Fold:Chelatase-like
Superfamily:Chelatase
Family:CbiX-like
8c1tjnA_



99.9 21
PDB header:lyase
Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase;
PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus
9d2hrca1



99.9 12
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
10c3lyhB_



99.9 32
PDB header:lyase
Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein;
PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution
11d1lbqa_



99.7 14
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
12d2p10a1



47.6 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Mll9387-like
13c2qieA_



47.4 12
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex with precursor2 z
14d1vmia_



47.3 22
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Phosphotransacetylase
15c1vmiA_



47.3 22
PDB header:transferase
Chain: A: PDB Molecule:putative phosphate acetyltransferase;
PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution
16c1r8jB_



44.0 15
PDB header:circadian clock protein
Chain: B: PDB Molecule:kaia;
PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus
17c3rpfB_



44.0 6
PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase catalytic subunit;
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695
18c5e38D_



40.6 24
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structural basis of mapping the spontaneous mutations with 5-2 flourouracil in uracil phosphoribosyltransferase from mycobacterium3 tuberculosis
19c2v9cA_



39.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
20c2hpvA_



38.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
21c2p10D_



not modelled 37.5 17
PDB header:hydrolase
Chain: D: PDB Molecule:mll9387 protein;
PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution
22d3beda1



not modelled 37.1 20
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
23d1v9sa1



not modelled 34.8 29
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
24d1tj1a2



not modelled 33.6 15
Fold:TIM beta/alpha-barrel
Superfamily:FAD-linked oxidoreductase
Family:Proline dehydrohenase domain of bifunctional PutA protein
25d1o94c_



not modelled 31.3 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
26c6fahB_



not modelled 29.5 10
PDB header:flavoprotein
Chain: B: PDB Molecule:caffeyl-coa reductase-etf complex subunit card;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
27c2wp4A_



not modelled 27.6 16
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2 1;
PDBTitle: crystal structure of rv3119 from mycobacterium tuberculosis
28d1fm0e_



not modelled 27.0 11
Fold:alpha/beta-Hammerhead
Superfamily:Molybdopterin synthase subunit MoaE
Family:Molybdopterin synthase subunit MoaE
29d1efpb_



not modelled 25.2 20
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
30d1r5ja_



not modelled 24.1 20
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Phosphotransacetylase
31d1vkma_



not modelled 24.0 13
Fold:Indigoidine synthase A-like
Superfamily:Indigoidine synthase A-like
Family:Indigoidine synthase A-like
32d1tcaa_



not modelled 24.0 12
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
33c4gijC_



not modelled 23.9 19
PDB header:hydrolase
Chain: C: PDB Molecule:pseudouridine-5'-phosphate glycosidase;
PDBTitle: crystal structure of pseudouridine monophosphate glycosidase complexed2 with sulfate
34c6jc0D_



not modelled 23.3 11
PDB header:transferase
Chain: D: PDB Molecule:putative molybdenum cofactor biosynthesis protein;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
35c3t4cD_



not modelled 23.2 20
PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria
36d1efvb_



not modelled 22.2 18
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
37c2w9xA_



not modelled 21.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative acetyl xylan esterase;
PDBTitle: the active site of a carbohydrate esterase displays2 divergent3 catalytic and non-catalytic binding functions
38d1o5oa_



not modelled 21.1 23
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
39c5wb4H_



not modelled 19.5 15
PDB header:transferase
Chain: H: PDB Molecule:n-acetylglucosaminyldiphosphoundecaprenol n-acetyl-beta-d-
PDBTitle: crystal structure of the tara wall teichoic acid glycosyltransferase
40d1nvja_



not modelled 19.2 11
Fold:alpha/beta-Hammerhead
Superfamily:Molybdopterin synthase subunit MoaE
Family:Molybdopterin synthase subunit MoaE
41c2ehjA_



not modelled 19.1 16
PDB header:transferase
Chain: A: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of uracil phosphoribosyl transferase
42d1u7na_



not modelled 18.8 26
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:PlsX-like
43d1s0aa_



not modelled 18.6 11
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
44c6jbzC_



not modelled 18.4 16
PDB header:transferase
Chain: C: PDB Molecule:molybdenum cofactor biosynthesis protein e;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
45d2nlya1



not modelled 17.8 8
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
46c5ow0B_



not modelled 17.7 14
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer flavoprotein, beta subunit;
PDBTitle: crystal structure of an electron transfer flavoprotein from2 geobacillus metallireducens
47d7reqa2



not modelled 16.9 12
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
48d3clsc1



not modelled 16.2 12
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
49d1olta_



not modelled 16.2 19
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
50d1t5ba_



not modelled 16.1 12
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
51c2e55D_



not modelled 15.8 20
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of aq2163 protein from aquifex aeolicus
52c4ap8A_



not modelled 15.5 11
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin synthase catalytic subunit;
PDBTitle: crystal structure of human molybdopterin synthase catalytic subunit2 (mocs2b)
53d1xg8a_



not modelled 15.4 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:YuzD-like
54d2c4ka1



not modelled 15.3 21
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
55c2qjwA_



not modelled 15.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein xcc1541;
PDBTitle: crystal structure of a putative hydrolase of the alpha/beta2 superfamily (xcc1541) from xanthomonas campestris pv. campestris at3 1.35 a resolution
56c2duwA_



not modelled 15.0 20
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
57c2q8uA_



not modelled 14.9 10
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease, putative;
PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution
58c4e4rA_



not modelled 14.3 15
PDB header:transferase
Chain: A: PDB Molecule:phosphate acetyltransferase;
PDBTitle: eutd phosphotransacetylase from staphylococcus aureus
59c3p0rA_



not modelled 14.2 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
60c4kq9A_



not modelled 14.0 9
PDB header:transport protein
Chain: A: PDB Molecule:ribose abc transporter, substrate binding protein;
PDBTitle: crystal structure of periplasmic ribose abc transporter from2 conexibacter woesei dsm 14684
61c2gjvF_



not modelled 13.8 21
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative cytoplasmic protein;
PDBTitle: crystal structure of a protein of unknown function from salmonella2 typhimurium
62c3ff1B_



not modelled 13.4 17
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus
63d2d59a1



not modelled 13.4 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
64c1tj2A_



not modelled 13.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:bifunctional puta protein;
PDBTitle: crystal structure of e. coli puta proline dehydrogenase domain2 (residues 86-669) complexed with acetate
65c3e9kA_



not modelled 13.0 9
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
66d1q6za1



not modelled 12.9 26
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
67d2ji7a1



not modelled 12.9 7
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
68c1pjaA_



not modelled 12.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor;
PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2)
69d1pjaa_



not modelled 12.7 22
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Thioesterases
70c2omdB_



not modelled 12.7 18
PDB header:lyase
Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5
71c4ry0A_



not modelled 12.6 9
PDB header:transport protein
Chain: A: PDB Molecule:probable ribose abc transporter, substrate-binding protein;
PDBTitle: crystal structure of ribose transporter solute binding protein2 rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex3 with d-ribose
72d1pdaa1



not modelled 12.4 22
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
73d1ozha1



not modelled 12.1 7
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
74d2gjva1



not modelled 12.0 21
Fold:Phage tail protein-like
Superfamily:Phage tail protein-like
Family:STM4215-like
75d1u9ya1



not modelled 11.8 37
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
76c3iprC_



not modelled 11.8 16
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
77c3d02A_



not modelled 11.7 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative laci-type transcriptional regulator;
PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
78c4h1xA_



not modelled 11.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phosphate-binding protein psts 2;
PDBTitle: crystal structure of a phosphate abc transporter, phosphate-binding2 protein (sp_2084) from streptococcus pneumoniae tigr4 at 1.77 a3 resolution
79c3cvgD_



not modelled 11.6 11
PDB header:metal binding protein
Chain: D: PDB Molecule:putative metal binding protein;
PDBTitle: crystal structure of a periplasmic putative metal binding protein
80c3ff4A_



not modelled 11.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
81d1pdoa_



not modelled 11.1 15
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
82c4ix1B_



not modelled 11.0 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of hypothetical protein opag_01669 from rhodococcus2 opacus pd630, target 016205
83d1r8ja2



not modelled 10.9 17
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:N-terminal domain of the circadian clock protein KaiA
84d2ihta1



not modelled 10.7 14
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
85d1xtta1



not modelled 10.7 5
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
86c3ga7A_



not modelled 10.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:acetyl esterase;
PDBTitle: 1.55 angstrom crystal structure of an acetyl esterase from salmonella2 typhimurium
87c4k40B_



not modelled 10.5 8
PDB header:hydrolase
Chain: B: PDB Molecule:gdsl-like lipase/acylhydrolase family protein;
PDBTitle: peptidoglycan o-acetylesterase in action, 0 min
88c5f2kA_



not modelled 10.5 14
PDB header:transferase
Chain: A: PDB Molecule:fatty acid o-methyltransferase;
PDBTitle: crystal structure of mycobacterial fatty acid o-methyltransferase in2 complex with sah and octanoate
89d1dkua1



not modelled 10.3 26
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
90c3rotA_



not modelled 10.0 6
PDB header:transport protein
Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein;
PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
91c6fmgC_



not modelled 9.9 11
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
92c4k39A_



not modelled 9.9 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic sulfatase-maturating enzyme;
PDBTitle: native ansmecpe with bound adomet and cp18cys peptide
93d2djia1



not modelled 9.7 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
94d1fnda2



not modelled 9.7 8
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
95d1y81a1



not modelled 9.7 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
96c2fqxA_



not modelled 9.6 11
PDB header:transport protein
Chain: A: PDB Molecule:membrane lipoprotein tmpc;
PDBTitle: pnra from treponema pallidum complexed with guanosine
97d1xgsa1



not modelled 9.4 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Methionine aminopeptidase, insert domain
98c4ltyD_



not modelled 9.3 8
PDB header:hydrolase
Chain: D: PDB Molecule:exonuclease subunit sbcd;
PDBTitle: crystal structure of e.coli sbcd at 1.8 a resolution
99c3lv2A_



not modelled 9.0 21
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin

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