Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2394_(ggtB)_2688020_2689951
DateMon Aug 5 13:25:55 BST 2019
Unique Job IDc20c392ffd1fc78d
SequenceVSVWLRAGAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.938 Y:62.053 Z:66.172
Model (left) based on template c4y23A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:gamma glutamyl transpeptidase,gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of t399a precursor mutant protein of gamma-glutamyl2 transpeptidase from bacillus licheniformis
Confidence and coverage
Confidence:100.0% Coverage: 82%
525 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4y23A_



100.0 35
PDB header:transferase
Chain: A: PDB Molecule:gamma glutamyl transpeptidase,gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of t399a precursor mutant protein of gamma-glutamyl2 transpeptidase from bacillus licheniformis
2d2nlza1



100.0 27
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Gamma-glutamyltranspeptidase-like
3d2i3oa1



100.0 25
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Gamma-glutamyltranspeptidase-like
4c2e0wA_



100.0 34
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: t391a precursor mutant protein of gamma-glutamyltranspeptidase from2 escherichia coli
5c2v36A_



100.0 35
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase large chain;
PDBTitle: crystal structure of gamma-glutamyl transferase from bacillus subtilis
6c2qm6C_



100.0 33
PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate
7c2z8jA_



100.0 33
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of escherichia coli gamma-glutamyltranspeptidase in2 complex with azaserine prepared in the dark
8c4gdxA_



100.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase 1 heavy chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
9c5zjgC_



100.0 31
PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltransferase 1 threonine peptidase. merops
PDBTitle: gamma-glutamyltranspeptidase from pseudomonas nitroreducens complexed2 with gly-gly
10c3g9kD_



100.0 30
PDB header:hydrolase
Chain: D: PDB Molecule:capsule biosynthesis protein capd;
PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd
11c5zjgD_



100.0 32
PDB header:transferase
Chain: D: PDB Molecule:gamma-glutamyltransferase 1 threonine peptidase. merops
PDBTitle: gamma-glutamyltranspeptidase from pseudomonas nitroreducens complexed2 with gly-gly
12c2e0yB_



100.0 39
PDB header:transferase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli
13c4gdxB_



100.0 34
PDB header:hydrolase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase 1 light chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
14c2v36D_



100.0 36
PDB header:transferase
Chain: D: PDB Molecule:gamma-glutamyltranspeptidase small chain;
PDBTitle: crystal structure of gamma-glutamyl transferase from bacillus subtilis
15c2nqoB_



100.0 35
PDB header:transferase
Chain: B: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase
16c3ga9S_



100.0 30
PDB header:hydrolase
Chain: S: PDB Molecule:capsule biosynthesis protein capd;
PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd,2 crystal form ii
17c1p4vA_



95.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase
PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine
18c1t3mA_



94.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
19c1apyA_



94.5 42
PDB header:hydrolase
Chain: A: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase
20c2gezE_



94.0 24
PDB header:hydrolase
Chain: E: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
21c3cuqA_



not modelled 94.0 26
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
22c4pu6A_



not modelled 93.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase alpha subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with k+ cations
23c2zmeA_



not modelled 93.5 26
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
24c2zakB_



not modelled 93.4 26
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase precursor;
PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation
25c1u5tA_



not modelled 93.2 21
PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
26c4gduB_



not modelled 93.1 37
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
27c2a8lB_



not modelled 92.0 37
PDB header:hydrolase
Chain: B: PDB Molecule:threonine aspartase 1;
PDBTitle: crystal structure of human taspase1 (t234a mutant)
28c2gacA_



not modelled 91.9 37
PDB header:hydrolase
Chain: A: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
29c1apzB_



not modelled 85.8 28
PDB header:complex (hydrolase/peptide)
Chain: B: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase complex with reaction product
30d1u5ta1



not modelled 78.3 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
31c2zalD_



not modelled 78.1 36
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
32c1w7pD_



not modelled 76.9 25
PDB header:protein transport
Chain: D: PDB Molecule:vps36p, ylr417w;
PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36)
33c2zmeB_



not modelled 75.9 6
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
34c1u5tB_



not modelled 75.1 25
PDB header:transport protein
Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
35c2zalB_



not modelled 73.3 29
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
36c1k2xD_



not modelled 70.1 36
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
37c1k2xB_



not modelled 70.1 36
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
38c1jn9D_



not modelled 70.1 36
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
39c2gacD_



not modelled 68.6 31
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
40c1t3mB_



not modelled 61.4 28
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
41c1t3mD_



not modelled 61.4 28
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
42c1jn9B_



not modelled 61.4 28
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
43c5loyD_



not modelled 59.5 13
PDB header:hydrolase
Chain: D: PDB Molecule:designed anbu protein;
PDBTitle: helical assembly of a designed anbu protein
44c2gezF_



not modelled 58.0 38
PDB header:hydrolase
Chain: F: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
45c5nywT_



not modelled 52.1 19
PDB header:unknown function
Chain: T: PDB Molecule:proteasome subunit;
PDBTitle: anbu (ancestral beta-subunit) from yersinia bercovieri
46c4pv3D_



not modelled 51.1 33
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
47d1u5tb1



not modelled 37.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
48c5xugB_



not modelled 36.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:endo-1,4-beta-mannanase;
PDBTitle: complex structure(rmman134a-m5).
49c5nygF_



not modelled 33.8 13
PDB header:hydrolase
Chain: F: PDB Molecule:anbu;
PDBTitle: anbu (gly-1) mutant from hyphomicrobium sp. strain mc1 - sg p2(1)2(1)2 2(1)
50c5jtsA_



not modelled 32.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:beta-1,4-mannanase;
PDBTitle: structure of a beta-1,4-mannanase, ssgh134.
51c5yvmA_



not modelled 30.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of the archaeal halo-thermophilic red sea brine pool2 alcohol dehydrogenase adh/d1 bound to nzq
52c6d6rF_



not modelled 28.4 23
PDB header:hydrolase
Chain: F: PDB Molecule:exosome complex component mtr3;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
53d1v6ta_



not modelled 28.0 50
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
54c2x5eA_



not modelled 28.0 67
PDB header:unknown function
Chain: A: PDB Molecule:upf0271 protein pa4511;
PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa
55d1xw8a_



not modelled 27.4 50
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
56d2dfaa1



not modelled 27.3 50
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
57d1u2ka_



not modelled 27.1 25
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
58d2ccaa1



not modelled 26.6 27
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
59d2fi0a1



not modelled 25.6 21
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
60d1a0da_



not modelled 25.0 21
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
61c3kzwD_



not modelled 24.3 17
PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col
62c3wrbB_



not modelled 24.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:gallate dioxygenase;
PDBTitle: crystal structure of the anaerobic h124f desb-gallate complex
63c3gxqB_



not modelled 21.5 27
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:putative regulator of transfer genes arta;
PDBTitle: structure of arta and dna complex
64d1o7ea_



not modelled 20.2 22
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
65c5i8iD_



not modelled 19.8 23
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
66c2nn6F_



not modelled 19.8 47
PDB header:hydrolase/transferase
Chain: F: PDB Molecule:exosome component 6;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
67c1udsA_



not modelled 19.3 28
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus
68c3hkmB_



not modelled 19.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:os03g0854200 protein;
PDBTitle: crystal structure of rice(oryza sativa) rrp46
69c2ccaA_



not modelled 18.8 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxidase/catalase t;
PDBTitle: crystal structure of the catalase-peroxidase (katg) and2 s315t mutant from mycobacterium tuberculosis
70c3ij3A_



not modelled 18.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii
71d2qalk1



not modelled 18.0 30
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
72c5loxH_



not modelled 17.7 18
PDB header:hydrolase
Chain: H: PDB Molecule:peptidase;
PDBTitle: helical assembly of the anbu complex from pseudomonas aeruginosa
73d1oj7a_



not modelled 17.2 20
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
74c3bt3B_



not modelled 17.1 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type;
PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans
75d1jq5a_



not modelled 16.8 19
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
76c3iraA_



not modelled 16.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
77d1r6la1



not modelled 16.2 22
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
78c3va7A_



not modelled 16.2 18
PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
79c1itkB_



not modelled 16.1 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase-peroxidase;
PDBTitle: crystal structure of catalase-peroxidase from haloarcula2 marismortui
80d1ro0a_



not modelled 16.0 24
Fold:Prim-pol domain
Superfamily:Prim-pol domain
Family:Bifunctional DNA primase/polymerase N-terminal domain
81c2nn6D_



not modelled 15.9 32
PDB header:hydrolase/transferase
Chain: D: PDB Molecule:exosome complex exonuclease rrp46;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
82c2zkqk_



not modelled 15.8 17
PDB header:ribosomal protein/rna
Chain: K: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
83d2uubk1



not modelled 15.6 17
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
84d2nn6f1



not modelled 15.6 44
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
85c4ifdC_



not modelled 15.5 22
PDB header:hydrolase/rna
Chain: C: PDB Molecule:exosome complex component rrp43;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
86c3b4tC_



not modelled 15.4 32
PDB header:transferase
Chain: C: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340
87c1u2jC_



not modelled 15.3 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxidase/catalase hpi;
PDBTitle: crystal structure of the c-terminal domain from the2 catalase-peroxidase katg of escherichia coli (p21 21 21)
88d1wg8a1



not modelled 15.2 24
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
89d2nn6b1



not modelled 15.2 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
90d1huwa_



not modelled 15.0 18
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
91d1udsa1



not modelled 14.8 28
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
92d2nn6a1



not modelled 14.7 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
93d2je6b1



not modelled 14.5 11
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
94d2nn6e1



not modelled 14.4 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
95c4ifdE_



not modelled 13.9 11
PDB header:hydrolase/rna
Chain: E: PDB Molecule:exosome complex component rrp42;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
96c5kpeA_



not modelled 13.7 32
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
97c6bwsA_



not modelled 13.6 17
PDB header:unknown function
Chain: A: PDB Molecule:glycolate utilization protein;
PDBTitle: crystal structure of efga from methylobacterium extorquens
98c1wg8B_



not modelled 13.2 22
PDB header:transferase
Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent
PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8.
99d2ba0g1



not modelled 13.0 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like

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Transmembrane helix prediction 

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