Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2395_(-)_2690082_2692085
DateMon Aug 5 13:25:55 BST 2019
Unique Job ID20c32e077bb59529
SequenceMSGATVGARE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.246 Y:29.551 Z:35.992
Model (left) based on template c6cfwI_
Top template information
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
Confidence and coverage
Confidence: 36.3% Coverage: 7%
46 residues ( 7% of your sequence) have been modelled with 36.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6cfwI_
36.3 20
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
2d1y5ic1
33.6 17
Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
3c6c90B_
32.0 33
PDB header:hydrolase/rna binding protein
Chain: B: PDB Molecule:zinc finger cchc domain-containing protein 8;
PDBTitle: human mtr4 helicase in complex with zcchc8-ctd
4c6igzM_
30.0 33
PDB header:plant protein
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of psi-lhci
5c6ithA_
29.5 28
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
6c3orgB_
26.8 20
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter
7c3qnqD_
24.7 12
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
8c2latA_
21.5 15
PDB header:membrane protein
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: solution structure of a human minimembrane protein ost4
9d1ymga1
17.5 13
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
10c1ymgA_
17.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
11c3chxG_
15.3 16
PDB header:membrane protein
Chain: G: PDB Molecule:pmoc;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
12d1j4na_
13.8 12
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
13c2na6B_
13.5 26
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
14c2na6A_
13.5 26
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
15c2na6C_
13.5 26
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
16c4nefB_
11.3 11
PDB header:membrane protein
Chain: B: PDB Molecule:aquaporin-2;
PDBTitle: x-ray structure of human aquaporin 2
17d2fnoa1
11.3 20
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
18c2n1pA_
11.2 30
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
19c3rgbG_
10.4 16
PDB header:oxidoreductase
Chain: G: PDB Molecule:methane monooxygenase subunit c2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
20c4a01B_
8.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:proton pyrophosphatase;
PDBTitle: crystal structure of the h-translocating pyrophosphatase
21c3rfrK_
not modelled 8.3 28
PDB header:oxidoreductase
Chain: K: PDB Molecule:pmoc;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
22d1dq3a3
not modelled 8.0 38
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
23c3j1zP_
not modelled 7.6 11
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
24c1yewC_
not modelled 7.1 21
PDB header:oxidoreductase, membrane protein
Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2;
PDBTitle: crystal structure of particulate methane monooxygenase
25c4rfsS_
not modelled 7.0 11
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:substrate binding pritein s;
PDBTitle: structure of a pantothenate energy coupling factor transporter
26c5zghK_
not modelled 6.8 19
PDB header:photosynthesis
Chain: K: PDB Molecule:psak;
PDBTitle: cryo-em structure of the red algal psi-lhcr
27c5azcA_
not modelled 6.6 19
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
28c1ckwA_
not modelled 6.4 33
PDB header:metal transport
Chain: A: PDB Molecule:protein (cystic fibrosis transmembrane
PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation
29c6hwhb_
not modelled 6.2 12
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
30c4djiA_
not modelled 5.8 12
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
31c2ka1A_
not modelled 5.2 45
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
32c2ka1B_
not modelled 5.2 45
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
33c2ka2B_
not modelled 5.2 45
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
34c2ka2A_
not modelled 5.2 45
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
35c2nx9B_
not modelled 5.1 18
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
36c1jb0K_
not modelled 5.1 18
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem 1 reaction centre subunit x;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
37d1jb0k_
not modelled 5.1 18
Fold:Photosystem I reaction center subunit X, PsaK
Superfamily:Photosystem I reaction center subunit X, PsaK
Family:Photosystem I reaction center subunit X, PsaK

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below