Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2398c_(cysW)_2694991_2695809
DateMon Aug 5 13:25:55 BST 2019
Unique Job IDa4eca4ddfcaef5dd
SequenceMTSLPAARYL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.668 Y:43.584 Z:66.368
Model (left) based on template c4tqvI_
Top template information
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
Confidence and coverage
Confidence:100.0% Coverage: 97%
265 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4tqvI_



100.0 17
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
2c3fh6F_



100.0 17
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
3d3d31c1



100.0 27
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
4c3d31D_



100.0 27
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
5c2onkC_



100.0 26
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
6d2onkc1



100.0 26
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7c2r6gF_



100.0 24
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
8d2r6gg1



100.0 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
9c4tqvJ_



100.0 17
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
10d2r6gf2



100.0 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
11c4ymuC_



99.9 14
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.8 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13d2r6gf1



72.4 8
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
14c2m8gX_



53.4 29
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
15c4l5eA_



51.8 26
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
16c1umqA_



49.3 6
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
17d1umqa_



49.3 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
18d1ntca_



47.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
19d1fipa_



42.5 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
20c6an7D_



39.3 6
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
21c5kbuA_



not modelled 39.2 17
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
22d1etob_



not modelled 35.0 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
23c3e7lD_



not modelled 32.0 23
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
24d1etxa_



not modelled 29.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
25c6an7C_



not modelled 26.6 6
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
26d1g2ha_



not modelled 25.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
27c1g2hA_



not modelled 25.1 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
28c2hx6A_



not modelled 24.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
29c2ks1A_



not modelled 17.4 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
30c2jwaA_



not modelled 17.4 18
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
31c5m7nA_



not modelled 16.6 10
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
32c2n2aA_



not modelled 13.8 18
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
33c1ojlD_



not modelled 13.7 19
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
34c2cw1A_



not modelled 11.9 40
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
35c2rddB_



not modelled 9.2 19
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
36d1cf7a_



not modelled 8.4 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Cell cycle transcription factor e2f-dp
37c2lhuA_



not modelled 7.7 14
PDB header:structural protein
Chain: A: PDB Molecule:mybpc3 protein;
PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain
38c2yl4A_



not modelled 7.4 9
PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
39c3s1bA_



not modelled 7.3 19
PDB header:signaling protein
Chain: A: PDB Molecule:mini-z;
PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis
40c1p7bB_



not modelled 7.1 12
PDB header:metal transport
Chain: B: PDB Molecule:integral membrane channel and cytosolic domains;
PDBTitle: crystal structure of an inward rectifier potassium channel
41c2qksA_



not modelled 6.9 5
PDB header:metal transport
Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera;
PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera
42c4qiwT_



not modelled 6.8 21
PDB header:transcription
Chain: T: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
43d2ns0a1



not modelled 6.6 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
44c6agfB_



not modelled 6.5 9
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
45c2oviA_



not modelled 6.5 11
PDB header:ligand binding protein, metal transport
Chain: A: PDB Molecule:hypothetical protein chux;
PDBTitle: structure of the heme binding protein chux
46c1twcF_



not modelled 6.4 29
PDB header:transcription
Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23
PDBTitle: rna polymerase ii complexed with gtp
47d1twff_



not modelled 6.4 29
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6
48c3rkoF_



not modelled 6.2 10
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
49c2rlfA_



not modelled 6.2 9
PDB header:proton transport
Chain: A: PDB Molecule:matrix protein 2;
PDBTitle: proton channel m2 from influenza a in complex with2 inhibitor rimantadine
50c2pmzW_



not modelled 6.2 14
PDB header:translation, transferase
Chain: W: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
51c6c14A_



not modelled 6.1 13
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
52c4j2nB_



not modelled 6.0 26
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
53c4j2nA_



not modelled 6.0 26
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
54c5xu1M_



not modelled 5.9 17
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
55c3sjdD_



not modelled 5.9 36
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: crystal structure of s. cerevisiae get3 with bound adp-mg2+ in complex2 with get2 cytosolic domain
56c3sjdE_



not modelled 5.9 36
PDB header:hydrolase/transport protein
Chain: E: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: crystal structure of s. cerevisiae get3 with bound adp-mg2+ in complex2 with get2 cytosolic domain
57c3zs9C_



not modelled 5.9 36
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
58c6ic4H_



not modelled 5.9 13
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
59c3zs9D_



not modelled 5.6 36
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
60c5b57B_



not modelled 5.6 15
PDB header:metal transport
Chain: B: PDB Molecule:putative hemin abc transport system, membrane protein;
PDBTitle: inward-facing conformation of abc heme importer bhuuv from2 burkholderia cenocepacia
61c5a40C_



not modelled 5.4 19
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
62d1qkla_



not modelled 5.3 29
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6
63c2d7dB_



not modelled 5.1 15
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
64c3tdsC_



not modelled 5.1 8
PDB header:membrane protein
Chain: C: PDB Molecule:formate/nitrite transporter;
PDBTitle: crystal structure of hsc f194i

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below