Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2402_(-)_2698539_2700467
DateWed Aug 7 12:50:01 BST 2019
Unique Job ID4ed0302e73f67bf3
SequenceMALSSSSPLR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:81.874 Y:58.951 Z:51.466
Model (left) based on template c1lf6A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase
Confidence and coverage
Confidence:100.0% Coverage: 84%
539 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
605 residues ( 94%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1lf6A_
100.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase
2d1ulva1
100.0 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
3d1lf6a1
100.0 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
4c5z3dA_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase 15-related protein;
PDBTitle: glycosidase f290y
5d2fbaa1
100.0 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
6c1ug9A_
100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
7d1gaia_
100.0 21
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
8c2vn4A_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea jecorina
9c6fhvA_
100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of penicillium oxalicum glucoamylase
10c6fhwB_
100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:glucoamylase p;
PDBTitle: structure of hormoconis resinae glucoamylase
11c5hopA_
100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:lmo0182 protein;
PDBTitle: 1.65 angstrom resolution crystal structure of lmo0182 (residues 1-245)2 from listeria monocytogenes egd-e
12c1v7wA_
100.0 15
PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
13c4zlgA_
100.0 16
PDB header:transferase
Chain: A: PDB Molecule:putative b-glycan phosphorylase;
PDBTitle: cellobionic acid phosphorylase - gluconic acid complex
14c5gorE_
100.0 17
PDB header:hydrolase
Chain: E: PDB Molecule:alkaline invertase;
PDBTitle: crystal structure of alkaline invertase inva from anabaena sp. pcc2 7120
15c3c67B_
100.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose
16c5z73A_
100.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:alr0819 protein;
PDBTitle: crystal structure of alkaline/neutral invertase invb from anabaena sp.2 pcc 7120
17c2cqtA_
100.0 18
PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate
18c2z07A_
100.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ttha0978;
PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8
19d1v7wa1
99.9 14
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
20c5fjsB_
99.9 12
PDB header:hydrolase
Chain: B: PDB Molecule:glucosylceramidase;
PDBTitle: bacterial beta-glucosidase reveals the structural and functional2 basis of genetic defects in human glucocerebrosidase 2 (gba2)3 disorders
21c5ohcB_
not modelled 99.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:hydrolase;
PDBTitle: crystal structure of mycolicibacterium hassiacum glucosylglycerate2 hydrolase (mhggh) in complex with glycerol
22c3qspB_
not modelled 99.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose
23c5d0fB_
not modelled 99.8 16
PDB header:sugar binding protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the candida glabrata glycogen debranching enzyme2 (e564q) in complex with maltopentaose
24c5h42A_
not modelled 99.8 10
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of 1,2-beta-oligoglucan phosphorylase from2 lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-3 phosphate
25d2jg0a1
not modelled 99.8 15
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
26c2jg0A_
not modelled 99.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
27c5nz7A_
not modelled 99.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase ligand free form
28c4j5tA_
not modelled 99.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:mannosyl-oligosaccharide glucosidase;
PDBTitle: crystal structure of processing alpha-glucosidase i
29d2nvpa1
not modelled 99.7 13
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
30c6i60B_
not modelled 99.7 13
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-rhamnosidase;
PDBTitle: structure of alpha-l-rhamnosidase from dictyoglumus thermophilum
31c4xhcB_
not modelled 99.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: rhamnosidase from klebsiella oxytoca with rhamnose bound
32c5m4aA_
not modelled 99.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:neutral trehalase;
PDBTitle: neutral trehalase nth1 from saccharomyces cerevisiae in complex with2 trehalose
33d2p0va1
not modelled 99.7 14
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
34c2p0vA_
not modelled 99.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides thetaiotaomicron,2 northeast structural genomics target btr58
35c5mhfA_
not modelled 99.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:mannosyl-oligosaccharide glucosidase;
PDBTitle: murine endoplasmic reticulum alpha-glucosidase i with n-9'-2 methoxynonyl-1-deoxynojirimycin
36c6gszA_
not modelled 99.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: crystal structure of native alfa-l-rhamnosidase from aspergillus2 terreus
37c5nz8A_
not modelled 99.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase with cellotetraose2 and phosphate bound
38c2okxB_
not modelled 99.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
39c3w5mA_
not modelled 99.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative rhamnosidase;
PDBTitle: crystal structure of streptomyces avermitilis alpha-l-rhamnosidase
40c6ggyA_
not modelled 99.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:laminaribiose phosphorylase;
PDBTitle: paenibacillus sp. ym1 laminaribiose phosphorylase with sulphate bound
41c3cihA_
not modelled 99.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-rhamnosidase;
PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron
42c5n6nC_
not modelled 99.4 17
PDB header:signaling protein
Chain: C: PDB Molecule:neutral trehalase;
PDBTitle: crystal structure of the 14-3-3:neutral trehalase nth1 complex
43c4ufcA_
not modelled 99.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:gh95;
PDBTitle: crystal structure of the gh95 enzyme bacova_03438
44c4ktrE_
not modelled 98.9 12
PDB header:transferase
Chain: E: PDB Molecule:glycoside hydrolase family 65 central catalytic;
PDBTitle: crystal structure of 2-o-alpha-glucosylglycerol phosphorylase in2 complex with isofagomine and glycerol
45c2rdyB_
not modelled 98.7 13
PDB header:hydrolase
Chain: B: PDB Molecule:bh0842 protein;
PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans
46d1h54a1
not modelled 98.6 14
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
47c1w6kA_
not modelled 98.6 14
PDB header:isomerase
Chain: A: PDB Molecule:lanosterol synthase;
PDBTitle: structure of human osc in complex with lanosterol
48c1o79A_
not modelled 98.5 14
PDB header:isomerase
Chain: A: PDB Molecule:squalene--hopene cyclase;
PDBTitle: structures of human oxidosqualene cyclase inhibitors bound to an2 homologous enzyme
49d2sqca1
not modelled 98.4 13
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
50c1h54B_
not modelled 98.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis
51c2eacB_
not modelled 98.2 13
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase;
PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin
52c5zhbB_
not modelled 97.8 11
PDB header:isomerase
Chain: B: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: structure of cellobiose 2-epimerase from bacillus thermoamylovorans2 b4167
53d1w6ka1
not modelled 97.4 15
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
54c5bp8A_
not modelled 97.1 16
PDB header:isomerase
Chain: A: PDB Molecule:ent-copalyl diphosphate synthase;
PDBTitle: ent-copalyl diphosphate synthase from streptomyces platensis
55c5mqrA_
not modelled 96.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-l-arabinobiosidase;
PDBTitle: sialidase bt_1020
56c3wkgA_
not modelled 96.7 15
PDB header:isomerase
Chain: A: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of cellobiose 2-epimerase in complex with2 glucosylmannose
57d2afaa1
not modelled 92.6 14
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:N-acylglucosamine (NAG) epimerase
58c4mu9B_
not modelled 92.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase family 73;
PDBTitle: crystal structure of a putative glycosylhydrolase (bt_3782) from2 bacteroides thetaiotaomicron vpi-5482 at 1.89 a resolution
59d2sqca2
not modelled 92.4 10
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
60c5zigD_
not modelled 91.5 12
PDB header:isomerase
Chain: D: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: the structure of cellobiose 2-epimerase from spirochaeta thermophila2 dsm 6192
61c3vw5B_
not modelled 90.7 14
PDB header:isomerase
Chain: B: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of sugar epimerase from ruminal bacterium
62d2d5ja1
not modelled 90.6 16
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyl Hydrolase Family 88
63c3gt5A_
not modelled 90.1 15
PDB header:isomerase
Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase;
PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa
64c4c1oA_
not modelled 88.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylosidase;
PDBTitle: geobacillus thermoglucosidasius gh family 52 xylosidase
65c4z4lA_
not modelled 85.8 11
PDB header:isomerase
Chain: A: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of cellobiose 2-epimerase from caldicellulosiruptor2 saccharolyticus dsm 8903
66c2zzrA_
not modelled 85.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae
67c3wiwA_
not modelled 80.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 88;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase specific for2 heparin
68d1qqfa_
not modelled 79.9 9
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
69d1fp3a_
not modelled 77.3 14
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:N-acylglucosamine (NAG) epimerase
70c5x32B_
not modelled 74.4 9
PDB header:isomerase
Chain: B: PDB Molecule:n-acylglucosamine 2-epimerase;
PDBTitle: crystal structure of d-mannose isomerase
71c3renB_
not modelled 74.0 9
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase, family 8;
PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens
72d1c3da_
not modelled 70.2 10
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
73d1gxma_
not modelled 68.7 12
Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
74c4q2bA_
not modelled 68.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-d-glucanase;
PDBTitle: the crystal structure of an endo-1,4-d-glucanase from pseudomonas2 putida kt2440
75c4v1sA_
not modelled 62.6 10
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,6-mannanase;
PDBTitle: structure of the gh76 alpha-mannanase bt2949 from2 bacteroides thetaiotaomicron
76c4malB_
not modelled 59.7 15
PDB header:unknown function
Chain: B: PDB Molecule:motility protein fimv;
PDBTitle: tpr3 of fimv from p. aeruginosa (pao1)
77c3s9vD_
not modelled 59.5 17
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
78c4qk0C_
not modelled 59.4 13
PDB header:hydrolase
Chain: C: PDB Molecule:gh127 beta-l-arabinofuranoside;
PDBTitle: crystal structure of ara127n-se, a gh127 beta-l-arabinofuranosidase2 from geobacillus stearothermophilus t6
79c3p5rB_
not modelled 54.1 18
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
80c3wkxA_
not modelled 53.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: crystal structure of gh127 beta-l-arabinofuranosidase hypba1 from2 bifidobacterium longum arabinose complex form
81d1hzfa_
not modelled 52.0 18
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Complement components
82c1hzfA_
not modelled 52.0 18
PDB header:immune system
Chain: A: PDB Molecule:complement factor c4a;
PDBTitle: c4adg fragment of human complement factor c4a
83c3saeA_
not modelled 51.2 19
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
84c4n2sA_
not modelled 50.0 13
PDB header:splicing/rna
Chain: A: PDB Molecule:tha8 rna binding protein;
PDBTitle: crystal structure of tha8 in complex with zm1a-6 rna
85d1r76a_
not modelled 46.2 12
Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
86c4a5wA_
not modelled 41.4 13
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: crystal structure of c5b6
87c4wslA_
not modelled 38.8 36
PDB header:de novo protein
Chain: A: PDB Molecule:pentatricopeptide repeat protein;
PDBTitle: crystal structure of designed cppr-polyc protein
88c3nqpB_
not modelled 38.7 9
PDB header:sugar binding protein
Chain: B: PDB Molecule:susd superfamily protein;
PDBTitle: crystal structure of a susd superfamily protein (bf1802) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution
89c3jwgA_
not modelled 36.9 21
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure analysis of the methyltransferase domain of2 bacterial-cthen1-c
90c5iwwD_
not modelled 35.6 31
PDB header:rna binding protein
Chain: D: PDB Molecule:pls9-ppr;
PDBTitle: crystal structure of rna editing factor of designer pls-type ppr/9r2 protein in complex with morf9/rip9
91c6r2mB_
not modelled 33.1 12
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside transferase;
PDBTitle: crystal structure of pssz from listeria monocytogenes
92c5swiD_
not modelled 31.6 11
PDB header:hydrolase
Chain: D: PDB Molecule:sugar hydrolase;
PDBTitle: crystal structure of spgh92 in complex with mannose
93c3pybB_
not modelled 30.7 15
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
94d1tj1a1
not modelled 28.3 20
Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
95c4ayqA_
not modelled 27.2 8
PDB header:hydrolase
Chain: A: PDB Molecule:mannosyl-oligosaccharide 1,2-alpha-mannosidase;
PDBTitle: structure of the gh47 processing alpha-1,2-mannosidase from2 caulobacter strain k31 in complex with mannoimidazole
96c3g6jB_
not modelled 26.5 11
PDB header:immune system
Chain: B: PDB Molecule:complement c3 alpha chain;
PDBTitle: c3b in complex with a c3b specific fab
97c3qxqD_
not modelled 26.3 14
PDB header:hydrolase
Chain: D: PDB Molecule:endoglucanase;
PDBTitle: structure of the bacterial cellulose synthase subunit z in complex2 with cellopentaose
98c4bojC_
not modelled 24.6 14
PDB header:hydrolase
Chain: C: PDB Molecule:alpha-1,6-mannanase;
PDBTitle: crystal structure of bacillus circulans tn-31 aman6 in2 complex with mannobiose
99d2pqrb1
not modelled 22.2 25
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
100c5mqoA_
not modelled 21.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: glycoside hydrolase bt_1003
101c1slyA_
not modelled 21.7 24
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
102d3dssb1
not modelled 21.5 14
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
103c5izwA_
not modelled 20.9 24
PDB header:rna binding protein
Chain: A: PDB Molecule:pls9-ppr;
PDBTitle: crystal structure of rna editing specific factor of designer pls-type2 ppr-9r protein

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