Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2403c_(lppR)_2700545_2701300
DateWed Aug 7 12:50:01 BST 2019
Unique Job IDf5eb8910e95a6bc3
SequenceVTNRWRWVVP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.449 Y:44.350 Z:36.819
Model (left) based on template c4esqA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine protein kinase;
PDBTitle: crystal structure of the extracellular domain of pknh from2 mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 76%
192 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4esqA_
100.0 22
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine protein kinase;
PDBTitle: crystal structure of the extracellular domain of pknh from2 mycobacterium tuberculosis
2c3lo3E_
54.2 18
PDB header:structure genomics, unknown function
Chain: E: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 colwellia psychrerythraea 34h.
3d2fiua1
45.6 29
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Atu0297-like
4c5uz5C_
24.2 9
PDB header:nuclear protein/rna
Chain: C: PDB Molecule:u1 small nuclear ribonucleoprotein a,tap tag;
PDBTitle: s. cerevisiae u1 snrnp
5c2b3gB_
14.6 17
PDB header:replication
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53n (fragment 33-60) bound to rpa70n
6c3dcaC_
13.8 11
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:rpa0582;
PDBTitle: crystal structure of the rpa0582- protein of unknown2 function from rhodopseudomonas palustris- a structural3 genomics target
7d1jaea1
13.5 27
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
8c3i08D_
13.3 12
PDB header:signaling protein
Chain: D: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: crystal structure of the s1-cleaved notch1 negative2 regulatory region (nrr)
9d1zata2
12.6 18
Fold:L,D-transpeptidase pre-catalytic domain-like
Superfamily:L,D-transpeptidase pre-catalytic domain-like
Family:L,D-transpeptidase pre-catalytic domain-like
10c5mx2r_
11.7 56
PDB header:oxidoreductase
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
11c5tisr_
11.1 56
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
12c5kair_
11.1 56
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
13c5tisR_
11.1 56
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: room temperature xfel structure of the native, doubly-illuminated2 photosystem ii complex
14c4pj0r_
11.0 56
PDB header:oxidoreductase, electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
15c5mx2R_
10.8 56
PDB header:oxidoreductase
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution
16c4ub8R_
10.8 56
PDB header:electron transport, photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
17c5kafR_
10.8 56
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
18c5ws5R_
10.8 56
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (preflash dark dataset)
19c5ws6R_
10.8 56
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (preflash two-flash dataset
20c5gthR_
10.8 56
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (dark dataset)
21c5gtiR_
not modelled 10.8 56
PDB header:photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native xfel structure of photosystem ii (two flash dataset)
22c4ub6R_
not modelled 10.8 56
PDB header:electron transport, photosynthesis
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
23c4il6R_
not modelled 10.8 56
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: structure of sr-substituted photosystem ii
24c4pj0R_
not modelled 10.8 56
PDB header:oxidoreductase, electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
25d1g94a1
not modelled 10.5 29
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
26d1r2za1
not modelled 10.1 18
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
27d1tdza1
not modelled 9.4 20
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
28c5kafr_
not modelled 9.3 56
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 3.0 a2 resolution
29c3cbnA_
not modelled 9.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein mth639;
PDBTitle: crystal structure of a conserved protein (mth639) from2 methanobacterium thermoautotrophicum
30d1k82a1
not modelled 8.9 18
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
31c5kaiR_
not modelled 7.8 56
PDB header:electron transport
Chain: R: PDB Molecule:photosystem ii protein y;
PDBTitle: nh3-bound rt xfel structure of photosystem ii 500 ms after the 2nd2 illumination (2f) at 2.8 a resolution
32c2n8fA_
not modelled 7.7 63
PDB header:toxin
Chain: A: PDB Molecule:spider toxin pi-hexatoxin-hi1a;
PDBTitle: chemical shift assignments and structure calculation of spider toxin2 pi-hexatoxin-hi1a
33d1k3xa1
not modelled 6.8 14
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
34d2hkja1
not modelled 6.4 5
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Topoisomerase VI-B subunit middle domain
35c2ly4B_
not modelled 5.8 18
PDB header:nuclear protein/antitumour protein
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: hmgb1-facilitated p53 dna binding occurs via hmg-box/p532 transactivation domain interaction and is regulated by the acidic3 tail
36d1hx0a1
not modelled 5.8 29
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
37d3dhpa1
not modelled 5.6 24
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
38d1ee8a1
not modelled 5.4 16
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
39c6ehiI_
not modelled 5.4 7
PDB header:dna binding protein
Chain: I: PDB Molecule:nuclease nuct;
PDBTitle: nuct from helicobacter pylori

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