Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2405_(-)_2703279_2703848
DateWed Aug 7 12:50:02 BST 2019
Unique Job IDaa0ca4c1335f8972
SequenceLQRFAENLVF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.827 Y:47.984 Z:38.421
Model (left) based on template c4mzpC_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
Confidence and coverage
Confidence: 99.8% Coverage: 54%
103 residues ( 54% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4mzpC_
99.8 15
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
2d1ne8a_
99.8 20
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
3c5hjzA_
99.7 18
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
4d1m1fa_
99.7 19
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
5d1ub4a_
99.5 16
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
6c5hk3B_
99.5 22
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
7c5wygC_
99.5 15
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
8c5xe3B_
99.3 13
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
9c5ccaA_
99.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10c2x35A_
45.7 33
PDB header:transcription
Chain: A: PDB Molecule:peregrin;
PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp domain of2 brpf1.
11c5ikjA_
30.3 33
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
12d1sg5a1
29.6 12
Fold:Rof/RNase P subunit-like
Superfamily:Rof/RNase P subunit-like
Family:Rof-like
13c3lyiA_
27.1 43
PDB header:transcription
Chain: A: PDB Molecule:bromodomain-containing protein 1;
PDBTitle: pwwp domain of human bromodomain-containing protein 1
14c3rlhA_
26.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a;
PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom
15c3pfsA_
22.3 40
PDB header:protein binding
Chain: A: PDB Molecule:bromodomain and phd finger-containing protein 3;
PDBTitle: pwwp domain of human bromodomain and phd finger-containing protein 3
16d1h3za_
19.8 57
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
17c5uoiA_
19.2 31
PDB header:de novo protein
Chain: A: PDB Molecule:hhh_rd1_0142;
PDBTitle: solution structure of the de novo mini protein hhh_rd1_0142
18c2gfuA_
18.7 29
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: nmr solution structure of the pwwp domain of mismatch2 repair protein hmsh6
19d2nlua1
16.8 29
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
20c2hz6A_
16.7 28
PDB header:signaling protein
Chain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1
PDBTitle: the crystal structure of human ire1-alpha luminal domain
21c3id6A_
not modelled 15.3 22
PDB header:transferase
Chain: A: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus nop5 (1-262) and2 fibrillarin complex
22c6g25A_
not modelled 12.9 43
PDB header:oncoprotein
Chain: A: PDB Molecule:histone-lysine n-methyltransferase nsd3;
PDBTitle: x-ray structure of nsd3-pwwp1 in complex with compound 4
23c2z6vA_
not modelled 12.9 23
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of sulfotransferase stf9 from2 mycobacterium avium
24c2l89A_
not modelled 12.8 18
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
25c2jvwA_
not modelled 12.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117
26d1n27a_
not modelled 12.3 19
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
27c6nd4a_
not modelled 11.2 22
PDB header:ribosome
Chain: A: PDB Molecule:mpp10;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
28c3rlgA_
not modelled 9.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a;
PDBTitle: crystal structure of loxosceles intermedia phospholipase d isoform 12 h12a mutant
29d2daqa1
not modelled 9.5 50
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
30c2fwtA_
not modelled 9.5 20
PDB header:electron transport
Chain: A: PDB Molecule:dhc, diheme cytochrome c;
PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides
31d1e5ra_
not modelled 8.0 17
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Type II Proline 3-hydroxylase (proline oxidase)
32c2nnwC_
not modelled 7.6 33
PDB header:transferase
Chain: C: PDB Molecule:nop5/nop56 related protein;
PDBTitle: alternative conformations of nop56/58-fibrillarin complex and2 implication for induced-fit assenly of box c/d rnps
33c5gz5A_
not modelled 7.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:snake venom phosphodiesterase (pde);
PDBTitle: crystal structure of snake venom phosphodiesterase (pde) from taiwan2 cobra (naja atra atra) in complex with amp
34c4fu6A_
not modelled 7.0 18
PDB header:transcription
Chain: A: PDB Molecule:pc4 and sfrs1-interacting protein;
PDBTitle: crystal structure of the psip1 pwwp domain
35c2zq5A_
not modelled 6.7 29
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of sulfotransferase stf1 from2 mycobacterium tuberculosis h37rv (type1 form)
36c3bxpA_
not modelled 6.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipase/esterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_2923) from2 lactobacillus plantarum wcfs1 at 1.70 a resolution
37d1tafb_
not modelled 6.5 21
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
38c3u99A_
not modelled 6.3 15
PDB header:electron transport
Chain: A: PDB Molecule:diheme cytochrome c;
PDBTitle: the experimental x-ray structure of the new diheme cytochrome type c2 from shewanella baltica os155 sb-dhc
39d1aopa1
not modelled 6.0 8
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
40c6nd4b_
not modelled 6.0 22
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
41c5volA_
not modelled 5.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative esterase;
PDBTitle: bacint_04212 ferulic acid esterase
42d2exda1
not modelled 5.5 22
Fold:OB-fold
Superfamily:NfeD domain-like
Family:NfeD domain-like
43c3ggzH_
not modelled 5.3 39
PDB header:protein transport, endocytosis
Chain: H: PDB Molecule:vacuolar protein-sorting-associated protein 46;
PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in complex2 with did2 mim motif
44c1mtpB_
not modelled 5.2 32
PDB header:structural genomics
Chain: B: PDB Molecule:serine proteinase inhibitor (serpin), chain b;
PDBTitle: the x-ray crystal structure of a serpin from a thermophilic prokaryote
45c3id5E_
not modelled 5.0 22
PDB header:transferase/ribosomal protein/rna
Chain: E: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna
46c4nm5B_
not modelled 5.0 50
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of gsk-3/axin complex bound to phosphorylated wnt2 receptor lrp6 c-motif
47c4nm3B_
not modelled 5.0 50
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of gsk-3/axin complex bound to phosphorylated n-2 terminal auto-inhibitory ps9 peptide
48c4nu1B_
not modelled 5.0 50
PDB header:transferase/peptide
Chain: B: PDB Molecule:axin-1;
PDBTitle: crystal structure of a transition state mimic of the gsk-3/axin2 complex bound to phosphorylated n-terminal auto-inhibitory ps93 peptide

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