Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2410c_(-)_2707343_2708320
DateWed Aug 7 12:50:03 BST 2019
Unique Job IDd8931172364ea092
SequenceMLARNAEALY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.849 Y:54.491 Z:32.420
Model (left) based on template d3bgea1
Top template information
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
Confidence and coverage
Confidence: 86.2% Coverage: 27%
87 residues ( 27% of your sequence) have been modelled with 86.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3bgea1
86.2 15
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
2d3ctda1
77.7 17
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
3c3ctdB_
68.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative atpase, aaa family;
PDBTitle: crystal structure of a putative aaa family atpase from prochlorococcus2 marinus subsp. pastoris
4c3pvsA_
56.8 14
PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
5c2r26C_
44.4 10
PDB header:transferase
Chain: C: PDB Molecule:citrate synthase;
PDBTitle: the structure of the ternary complex of carboxymethyl2 coenzyme a and oxalateacetate with citrate synthase from3 the thermophilic archaeonthermoplasma acidophilum
6d1a59a_
44.1 12
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
7d2r9ga1
42.2 21
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
8d1ioma_
33.9 9
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
9c5an6A_
33.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:crispr-associated protein, csm2 family;
PDBTitle: crystal structure of thermotoga maritima csm2
10c6jdxC_
31.4 38
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of acriic2 dimer in complex with partial nme1cas92 preprocessed with protease alpha-chymotrypsin
11d1csca_
26.7 6
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
12c4wlpB_
24.0 22
PDB header:protein binding
Chain: B: PDB Molecule:nuclear factor related to kappa-b-binding protein;
PDBTitle: crystal structure of uch37-nfrkb inhibited deubiquitylating complex
13c2ibpB_
23.2 9
PDB header:transferase
Chain: B: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum
14d1xmec1
22.2 38
Fold:Single transmembrane helix
Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa
Family:Bacterial ba3 type cytochrome c oxidase subunit IIa
15c3bvdC_
22.2 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c oxidase polypeptide 2a;
PDBTitle: structure of surface-engineered cytochrome ba3 oxidase from thermus2 thermophilus under xenon pressure, 100psi 5min
16c2c6xA_
21.6 8
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase 1;
PDBTitle: structure of bacillus subtilis citrate synthase
17c6j9mF_
19.2 38
PDB header:hydrolase/hydrolase inhibitor
Chain: F: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: nmebh+acriic2
18c6j9mA_
17.2 38
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: nmebh+acriic2
19c2xl1A_
17.1 24
PDB header:translation
Chain: A: PDB Molecule:arginine attenuator peptide;
PDBTitle: structural basis of translational stalling by human cytomegalovirus2 (hcmv) and fungal arginine attenuator peptide (aap)
20c3i6xC_
16.1 18
PDB header:calmodulin-binding, membrane protein
Chain: C: PDB Molecule:ras gtpase-activating-like protein iqgap1;
PDBTitle: crystal structure of the calponin homology domain of iqgap1
21c3o8jH_
not modelled 15.2 5
PDB header:transferase
Chain: H: PDB Molecule:2-methylcitrate synthase;
PDBTitle: crystal structure of 2-methylcitrate synthase (prpc) from salmonella2 typhimurium
22d1o7xa_
not modelled 14.0 13
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
23c3izcN_
not modelled 11.8 18
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
24c6musB_
not modelled 11.7 12
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:uncharacterized protein csm2;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
25c5lcyD_
not modelled 11.6 13
PDB header:transcription
Chain: D: PDB Molecule:frmr;
PDBTitle: formaldehyde-responsive regulator frmr e64h variant from salmonella2 enterica serovar typhimurium
26c3o0kB_
not modelled 11.2 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldo/keto reductase;
PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis
27c5lbmD_
not modelled 10.4 10
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor frmr;
PDBTitle: the asymmetric tetrameric structure of the formaldehyde sensing2 transcriptional repressor frmr from escherichia coli
28c1vgpA_
not modelled 10.3 9
PDB header:transferase
Chain: A: PDB Molecule:373aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
29c3hwkE_
not modelled 10.2 4
PDB header:transferase
Chain: E: PDB Molecule:methylcitrate synthase;
PDBTitle: crystal structure of methylcitrate synthase from mycobacterium2 tuberculosis
30d2ezha_
not modelled 10.1 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
31c3b3dA_
not modelled 10.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative morphine dehydrogenase;
PDBTitle: b.subtilis ytbe
32c2bp1C_
not modelled 9.9 7
PDB header:oxidoreductase
Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2;
PDBTitle: structure of the aflatoxin aldehyde reductase in complex with nadph
33d1kvka2
not modelled 9.9 15
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Mevalonate kinase
34c3npdA_
not modelled 9.9 36
PDB header:unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: crystal structure of a putative secreted protein (pa3611) from2 pseudomonas aeruginosa at 1.60 a resolution
35c6abxA_
not modelled 9.8 13
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase (msed_1522) from metallosphaera2 sedula in complex with citrate
36c2rr8A_
not modelled 9.6 17
PDB header:protein binding
Chain: A: PDB Molecule:iqgap1 protein;
PDBTitle: solution structure of calponin homology domain of iqgap1
37c2l9uB_
not modelled 9.4 83
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
38c2l9uA_
not modelled 9.4 83
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
39c2yleA_
not modelled 9.2 13
PDB header:actin-binding protein
Chain: A: PDB Molecule:protein spire homolog 1;
PDBTitle: crystal structure of the human spir-1 kind fsi domain in2 complex with the fsi peptide
40c4m1pA_
not modelled 9.0 16
PDB header:transcription repressor
Chain: A: PDB Molecule:copper-sensitive operon repressor (csor);
PDBTitle: crystal structure of the copper-sensing repressor csor with cu(i) from2 geobacillus thermodenitrificans ng80-2
41c1vgmB_
not modelled 9.0 10
PDB header:transferase
Chain: B: PDB Molecule:378aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
42c2vohB_
not modelled 9.0 21
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: structure of mouse a1 bound to the bak bh3-domain
43c5ijoI_
not modelled 8.8 12
PDB header:transport protein
Chain: I: PDB Molecule:nuclear pore complex protein nup93;
PDBTitle: alternative composite structure of the inner ring of the human nuclear2 pore complex (16 copies of nup188, 16 copies of nup205)
44c5fmtB_
not modelled 8.7 15
PDB header:protein transport
Chain: B: PDB Molecule:flagellar associated protein;
PDBTitle: crift54 ch-domain
45c4xghA_
not modelled 8.7 13
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase;
PDBTitle: x-ray crystal structure of citrate synthase from burkholderia2 thailandensis
46c3ci9B_
not modelled 8.6 16
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
47c1ezeA_
not modelled 8.6 38
PDB header:transferase inhibitor
Chain: A: PDB Molecule:cholesteryl ester transferase inhibitor protein;
PDBTitle: structural studies of a baboon (papio sp.) plasma protein2 inhibitor of cholesteryl ester transferase.
48c5uqqD_
not modelled 8.3 5
PDB header:transferase
Chain: D: PDB Molecule:2-methylcitrate synthase, mitochondrial;
PDBTitle: crystal structure of 2-methylcitrate synthase from aspergillus2 fumigatus
49c3njcA_
not modelled 8.2 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yslb protein;
PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460.
50c3eevC_
not modelled 8.2 15
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor
51c1vbjB_
not modelled 8.1 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin f synthase;
PDBTitle: the crystal structure of prostaglandin f synthase from trypanosoma2 brucei
52d1k3pa_
not modelled 7.9 12
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
53c6e3yE_
not modelled 7.8 29
PDB header:signaling protein
Chain: E: PDB Molecule:receptor activity-modifying protein 1;
PDBTitle: cryo-em structure of the active, gs-protein complexed, human cgrp2 receptor
54c4fziA_
not modelled 7.8 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:prostaglandin f synthase;
PDBTitle: crystal structure of prostaglandin f synthase from trypanosoma cruzi
55c4q3mF_
not modelled 7.6 7
PDB header:hydrolase
Chain: F: PDB Molecule:mgs-m4;
PDBTitle: crystal structure of mgs-m4, an aldo-keto reductase enzyme from a2 medee basin deep-sea metagenome library
56c1uvqC_
not modelled 7.6 35
PDB header:immune system
Chain: C: PDB Molecule:orexin;
PDBTitle: crystal structure of hla-dq0602 in complex with a2 hypocretin peptide
57c3v0tA_
not modelled 7.6 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:perakine reductase;
PDBTitle: crystal structure of perakine reductase, founder member of a novel akr2 subfamily with unique conformational changes during nadph binding
58c3n2tA_
not modelled 7.2 3
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans
59c3n8uB_
not modelled 7.1 25
PDB header:hydrolase
Chain: B: PDB Molecule:imelysin peptidase;
PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution
60c5hb3A_
not modelled 7.1 6
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin nic96;
PDBTitle: crystal structure of chaetomium thermophilum nic96 sol-nup53 complex
61d1hw6a_
not modelled 7.0 7
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
62c5kzfJ_
not modelled 6.8 19
PDB header:hydrolase
Chain: J: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of near full-length hexameric mycobacterium2 tuberculosis proteasomal atpase mpa in apo form
63d1hnra_
not modelled 6.8 17
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
64c1wynA_
not modelled 6.7 15
PDB header:structural protein
Chain: A: PDB Molecule:calponin-2;
PDBTitle: solution structure of the ch domain of human calponin-2
65c6hxiD_
not modelled 6.7 11
PDB header:lyase
Chain: D: PDB Molecule:succinyl-coa ligase (adp-forming) subunit alpha;
PDBTitle: structure of atp citrate lyase from methanothrix soehngenii in complex2 with citrate and coenzyme a
66c5svaT_
not modelled 6.7 17
PDB header:transcription, transferase/dna
Chain: T: PDB Molecule:mediator of rna polymerase ii transcription subunit 4;
PDBTitle: mediator-rna polymerase ii pre-initiation complex
67c3tqgA_
not modelled 6.6 8
PDB header:transferase
Chain: A: PDB Molecule:2-methylcitrate synthase;
PDBTitle: structure of the 2-methylcitrate synthase (prpc) from coxiella2 burnetii
68d2al6a2
not modelled 6.5 16
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
69d1iv8a2
not modelled 6.3 12
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
70c3iabB_
not modelled 6.3 15
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop7;
PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna
71c6gu1B_
not modelled 6.2 16
PDB header:unknown function
Chain: B: PDB Molecule:secreted rxlr effector peptide protein, putative;
PDBTitle: sfi3 effector protein from the oomycete plant pathogen phytophthora2 infestans
72d2ctsa_
not modelled 6.2 8
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
73c4ufcA_
not modelled 6.2 45
PDB header:hydrolase
Chain: A: PDB Molecule:gh95;
PDBTitle: crystal structure of the gh95 enzyme bacova_03438
74d2cpta1
not modelled 6.2 24
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
75c1wypA_
not modelled 6.2 6
PDB header:structural protein
Chain: A: PDB Molecule:calponin 1;
PDBTitle: solution structure of the ch domain of human calponin 1
76d1pyfa_
not modelled 6.2 17
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
77c6mbcB_
not modelled 6.0 25
PDB header:apoptosis
Chain: B: PDB Molecule:df4;
PDBTitle: human bfl-1 in complex with the designed peptide df4
78c2v6xA_
not modelled 6.0 25
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: stractural insight into the interaction between escrt-iii and vps4
79c3jz0B_
not modelled 6.0 11
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:lincosamide nucleotidyltransferase;
PDBTitle: linb complexed with clindamycin and ampcpp
80d1ioua_
not modelled 5.9 21
Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
81c2nupC_
not modelled 5.9 14
PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the human sec23a/24a heterodimer, complexed with2 the snare protein sec22b
82c3egdC_
not modelled 5.9 14
PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23a/24a2 complexed with the snare protein sec22 and bound to the transport3 signal sequence of vesicular stomatitis virus glycoprotein
83c2eiuE_
not modelled 5.9 56
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:hypothetical protein aq_1627;
PDBTitle: crystal structure of a putative protein (aq1627) from aquifex aeolicus
84d1ji8a_
not modelled 5.9 11
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
85c6mp2B_
not modelled 5.8 6
PDB header:hydrolase
Chain: B: PDB Molecule:blman5b;
PDBTitle: crystal structure of blman5b solved by siras
86c3erpA_
not modelled 5.8 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium
87c4wghA_
not modelled 5.8 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde reductase;
PDBTitle: crystal structure of aldo/keto reductase from klebsiella pneumoniae in2 complex with nadp and acetate at 1.8 a resolution
88c5w8sA_
not modelled 5.7 9
PDB header:transferase
Chain: A: PDB Molecule:lipid-a-disaccharide synthase;
PDBTitle: lipid a disaccharide synthase (lpxb)-7 solubilizing mutations
89d1ur3m_
not modelled 5.7 9
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
90c1vw4d_
not modelled 5.6 26
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
91c2bbrA_
not modelled 5.6 43
PDB header:viral protein
Chain: A: PDB Molecule:viral casp8 and fadd-like apoptosis regulator;
PDBTitle: crystal structure of mc159 reveals molecular mechanism of2 disc assembly and vflip inhibition
92c3k7bA_
not modelled 5.6 44
PDB header:viral protein
Chain: A: PDB Molecule:protein a33;
PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains.
93d2jq9a1
not modelled 5.6 27
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
94d1ifqa_
not modelled 5.6 14
Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
95c3qbrY_
not modelled 5.6 16
PDB header:apoptosis
Chain: Y: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: bakbh3 in complex with sja
96c5vwvB_
not modelled 5.6 24
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-bh3 - cubic
97c5ua4B_
not modelled 5.5 20
PDB header:apoptosis
Chain: B: PDB Molecule:bh3-interacting domain death agonist;
PDBTitle: crystal structure of a179l:bid bh3 complex
98c5vwwC_
not modelled 5.5 24
PDB header:apoptosis
Chain: C: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-rt - tetragonal
99d2bgca1
not modelled 5.5 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like

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