Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2414c_(-)_2711342_2712886
DateWed Aug 7 12:50:03 BST 2019
Unique Job ID4b11f80663932d75
SequenceMGFGASRLDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.510 Y:25.971 Z:23.012
Model (left) based on template d1ig3a2
Top template information
Fold:Thiamin pyrophosphokinase, catalytic domain
Superfamily:Thiamin pyrophosphokinase, catalytic domain
Family:Thiamin pyrophosphokinase, catalytic domain
Confidence and coverage
Confidence: 57.4% Coverage: 8%
40 residues ( 8% of your sequence) have been modelled with 57.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ig3a2



57.4 18
Fold:Thiamin pyrophosphokinase, catalytic domain
Superfamily:Thiamin pyrophosphokinase, catalytic domain
Family:Thiamin pyrophosphokinase, catalytic domain
2c2hh9A_



54.3 15
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: thiamin pyrophosphokinase from candida albicans
3c2f17A_



45.2 18
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase 1;
PDBTitle: mouse thiamin pyrophosphokinase in a ternary complex with2 pyrithiamin pyrophosphate and amp at 2.5 angstrom
4c3t98A_



20.1 36
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
5c3t98C_



19.8 18
PDB header:protein transport
Chain: C: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
6c1ig0A_



18.3 20
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of yeast thiamin pyrophosphokinase
7c3lm8D_



18.0 24
PDB header:transferase
Chain: D: PDB Molecule:thiamine pyrophosphokinase;
PDBTitle: crystal structure of thiamine pyrophosphokinase from bacillus2 subtilis, northeast structural genomics consortium target sr677
8c3cq9C_



17.4 21
PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein lp_1622;
PDBTitle: crystal structure of the lp_1622 protein from lactobacillus plantarum.2 northeast structural genomics consortium target lpr114
9c2k42A_



17.4 25
PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protein;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
10d1gwua_



16.9 36
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
11d1rp4a_



15.6 50
Fold:ERO1-like
Superfamily:ERO1-like
Family:ERO1-like
12c2vzaD_



15.5 11
PDB header:cell adhesion
Chain: D: PDB Molecule:cell filamentation protein;
PDBTitle: type iv secretion system effector protein bepa
13c2lnhA_



15.3 20
PDB header:signaling protein/protein binding
Chain: A: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
14c3k94A_



14.8 21
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of thiamin pyrophosphokinase from geobacillus2 thermodenitrificans, northeast structural genomics consortium target3 gtr2
15c3ahrA_



14.7 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:ero1-like protein alpha;
PDBTitle: inactive human ero1
16c3ihkC_



14.2 21
PDB header:transferase
Chain: C: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of thiamin pyrophosphokinase from s.mutans,2 northeast structural genomics consortium target smr83
17c3melC_



14.2 14
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein;
PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150
18c1ceeB_



13.9 25
PDB header:structural protein regulation
Chain: B: PDB Molecule:wiskott-aldrich syndrome protein wasp;
PDBTitle: solution structure of cdc42 in complex with the gtpase2 binding domain of wasp
19c3e0eA_



13.4 15
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
20d1ig0a2



13.3 21
Fold:Thiamin pyrophosphokinase, catalytic domain
Superfamily:Thiamin pyrophosphokinase, catalytic domain
Family:Thiamin pyrophosphokinase, catalytic domain
21d1b80a_



not modelled 11.7 14
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
22c2kngA_



not modelled 11.5 25
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
23c5dniB_



not modelled 10.1 20
PDB header:lyase
Chain: B: PDB Molecule:putative l(+)-tartrate dehydratase subunit beta;
PDBTitle: crystal structure of methanocaldococcus jannaschii fumarate hydratase2 beta subunit
24c2d0jD_



not modelled 10.0 40
PDB header:transferase
Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta-
PDBTitle: crystal structure of human glcat-s apo form
25c3l8mA_



not modelled 9.6 12
PDB header:transferase
Chain: A: PDB Molecule:probable thiamine pyrophosphokinase;
PDBTitle: crystal structure of a probable thiamine pyrophosphokinase2 from staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target id syr86
26c1e0aB_



not modelled 9.6 14
PDB header:signalling protein/kinase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
27d1ltla_



not modelled 9.4 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA replication initiator (cdc21/cdc54) N-terminal domain
28c1f3mB_



not modelled 9.3 14
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: crystal structure of human serine/threonine kinase pak1
29d1scha_



not modelled 8.7 27
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
30c6apxA_



not modelled 8.6 38
PDB header:hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein,dual specificity
PDBTitle: crystal structure of human dual specificity phosphatase 1 catalytic2 domain (c258s) as a maltose binding protein fusion in complex with3 the monobody ysx1
31c4gs3A_



not modelled 8.6 16
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: dimeric structure of the n-terminal domain of prib protein from2 thermoanaerobacter tencongensis solved ab initio
32c3hdlA_



not modelled 8.5 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:royal palm tree peroxidase;
PDBTitle: crystal structure of highly glycosylated peroxidase from royal palm2 tree
33d1gawa1



not modelled 8.5 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
34c6b3yA_



not modelled 8.5 25
PDB header:transport protein
Chain: A: PDB Molecule:denn domain-containing protein 3;
PDBTitle: crystal structure of the ph-like domain from dennd3
35c2vl6C_



not modelled 8.3 4
PDB header:dna binding protein
Chain: C: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain
36c1ltlE_



not modelled 8.2 15
PDB header:replication
Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54);
PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum
37d2vnud1



not modelled 8.1 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
38c4n9nA_



not modelled 8.1 29
PDB header:transcription
Chain: A: PDB Molecule:sterol uptake control protein 2, lysozyme;
PDBTitle: crystal structure of saccharomyces cerevisiae upc2 transcription2 factor fused with t4 lysozyme
39d2cvza1



not modelled 8.0 19
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
40c5n9yB_



not modelled 7.9 19
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
41d1ej5a_



not modelled 7.8 21
Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
42c2omkB_



not modelled 7.8 16
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of the bacteroides thetaiotaomicron thiamin2 pyrophosphokinase
43c4pogC_



not modelled 7.7 9
PDB header:replication, dna binding protein/dna
Chain: C: PDB Molecule:cell division control protein 21;
PDBTitle: mcm-ssdna co-crystal structure
44d1ijwc_



not modelled 7.7 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
45d1r7ma1



not modelled 7.5 33
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
46d1ub2a1



not modelled 7.3 14
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
47d3cuma1



not modelled 7.0 19
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
48c4g0dX_



not modelled 7.0 17
PDB header:hydrolase
Chain: X: PDB Molecule:collagenase 3, pro-domain peptide;
PDBTitle: human collagenase 3 (mmp-13) full form with peptides from pro-domain
49c4fu4D_



not modelled 7.0 17
PDB header:hydrolase
Chain: D: PDB Molecule:collagenase 3, pro-domain peptide;
PDBTitle: human collagenase 3 (mmp-13) with peptide from pro-domain
50c6msoD_



not modelled 6.9 12
PDB header:lyase/lyase inhibitor
Chain: D: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of mitochondrial fumarate hydratase from leishmania2 major in a complex with inhibitor thiomalate
51d1lvaa3



not modelled 6.9 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
52c5d7tC_



not modelled 6.8 10
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
53d1hcra_



not modelled 6.8 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
54c5gqoB_



not modelled 6.7 18
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: structure of the second single stranded dna binding protein (ssbb)2 from mycobacterium smegmatis
55c2l6wA_



not modelled 6.6 19
PDB header:membrane protein
Chain: A: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
56c2l6wB_



not modelled 6.6 19
PDB header:membrane protein
Chain: B: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
57d1vpda1



not modelled 6.6 22
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
58c4me3A_



not modelled 6.5 17
PDB header:replication
Chain: A: PDB Molecule:dna replication licensing factor mcm related protein;
PDBTitle: 1.8 angstrom crystal structure of the n-terminal domain of an archaeal2 mcm
59c3fdfA_



not modelled 6.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fr253;
PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253.
60d1fnda1



not modelled 6.4 14
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
61c3o2qB_



not modelled 6.4 10
PDB header:hydrolase
Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase
PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex
62c5l2rA_



not modelled 6.4 12
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of fumarate hydratase from leishmania major
63d2a1xa1



not modelled 6.3 12
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:PhyH-like
64c2hcnA_



not modelled 6.3 43
PDB header:transferase
Chain: A: PDB Molecule:rna-directed rna polymerase (ns5);
PDBTitle: crystal structure of rna dependent rna polymerase domain from west2 nile virus
65c3riwA_



not modelled 6.2 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:ascorbate peroxidase;
PDBTitle: the crystal structure of leishmania major peroxidase mutant c197t
66d2ccaa1



not modelled 6.2 18
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
67c5ccvH_



not modelled 6.2 43
PDB header:transferase
Chain: H: PDB Molecule:rna-directed rna polymerase ns5;
PDBTitle: crystal structure of full-length ns5 from dengue virus type 3
68c5z7cA_



not modelled 6.1 16
PDB header:metal binding protein
Chain: A: PDB Molecule:3'3'-cgamp-specific phosphodiesterase 3;
PDBTitle: crystal structure of cyclic gmp-amp specifc phosphodiesterases in2 v.cholerae (v-cgap3)
69c4xbzB_



not modelled 6.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:evdo1;
PDBTitle: crystal structure of evdo1 from micromonospora carbonacea var.2 aurantiaca
70c6f34C_



not modelled 6.0 5
PDB header:membrane protein
Chain: C: PDB Molecule:mgts;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue bound to arginine.
71c5oqtC_



not modelled 6.0 5
PDB header:transport protein
Chain: C: PDB Molecule:uncharacterized protein ynem;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
72d1pa2a_



not modelled 5.9 41
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
73d1mwva1



not modelled 5.9 14
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
74c4ogqE_



not modelled 5.8 23
PDB header:electron transport
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
75c4h44E_



not modelled 5.8 23
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
76c2zt9E_



not modelled 5.8 23
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
77c1kqfB_



not modelled 5.8 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
78d2ji7a2



not modelled 5.7 9
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
79d1bg1a2



not modelled 5.7 20
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:STAT DNA-binding domain
80c2latA_



not modelled 5.6 21
PDB header:membrane protein
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: solution structure of a human minimembrane protein ost4
81d1k1sa2



not modelled 5.6 17
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
82d2isba1



not modelled 5.6 8
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:FumA C-terminal domain-like
Family:FumA C-terminal domain-like
83d1v6ga2



not modelled 5.6 21
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
84d1sm4a1



not modelled 5.6 16
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
85d1bgpa_



not modelled 5.6 27
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
86d2q4qa1



not modelled 5.6 20
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
87d1itka1



not modelled 5.6 14
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
88d1ub2a2



not modelled 5.5 23
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
89c4hylB_



not modelled 5.5 10
PDB header:transcription regulator
Chain: B: PDB Molecule:stage ii sporulation protein;
PDBTitle: the crystal structure of an anti-sigma-factor antagonist from2 haliangium ochraceum dsm 14365
90c2j7uA_



not modelled 5.5 43
PDB header:viral protein
Chain: A: PDB Molecule:rna dependent rna polymerase;
PDBTitle: dengue virus ns5 rna dependent rna polymerase domain
91d1okra_



not modelled 5.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
92c1r7mA_



not modelled 5.5 35
PDB header:hydrolase/dna
Chain: A: PDB Molecule:intron-encoded endonuclease i-scei;
PDBTitle: the homing endonuclease i-scei bound to its dna recognition2 region
93c3jc72_



not modelled 5.4 11
PDB header:hydrolase
Chain: 2: PDB Molecule:dna replication licensing factor mcm2;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
94c3o2sB_



not modelled 5.4 10
PDB header:hydrolase
Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase
PDBTitle: crystal structure of the human symplekin-ssu72 complex
95d1dzka_



not modelled 5.3 17
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
96d2e39a1



not modelled 5.3 14
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:CCP-like
97d1v82a_



not modelled 5.3 45
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
98c2kctA_



not modelled 5.3 10
PDB header:chaperone
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccme;
PDBTitle: solution nmr structure of the ob-fold domain of heme2 chaperone ccme from desulfovibrio vulgaris. northeast3 structural genomics target dvr115g.
99c4mitE_



not modelled 5.3 33
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd

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Transmembrane helix prediction 

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