Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2417c_(-)_2715482_2716324
DateWed Aug 7 12:50:03 BST 2019
Unique Job IDd3d7b3a2b0d99d02
SequenceVTVVVVTDTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.909 Y:49.387 Z:58.712
Model (left) based on template c6dkeA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b1 protein;
PDBTitle: the x-ray crystal structure of streptococcus pneumoniae fatty acid2 kinase (fak) b1 protein loaded with palmitic acid (c16:0) to 1.763 angstrom resolution
Confidence and coverage
Confidence:100.0% Coverage: 97%
272 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dkeA_
100.0 21
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b1 protein;
PDBTitle: the x-ray crystal structure of streptococcus pneumoniae fatty acid2 kinase (fak) b1 protein loaded with palmitic acid (c16:0) to 1.763 angstrom resolution
2c2dt8A_
100.0 31
PDB header:lipid binding protein
Chain: A: PDB Molecule:degv family protein;
PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus
3c3fysA_
100.0 28
PDB header:fatty acid-binding protein
Chain: A: PDB Molecule:protein degv;
PDBTitle: crystal structure of degv, a fatty acid binding protein2 from bacillus subtilis
4c6cngA_
100.0 19
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b3 protein;
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b3 protein loaded with linoleic acid to 1.47 angstrom3 resolution
5c3lupA_
100.0 23
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:degv family protein;
PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae
6d1pzxa_
100.0 24
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
7c5utoB_
100.0 26
PDB header:transport protein
Chain: B: PDB Molecule:edd domain protein, degv family;
PDBTitle: the crystal structure of the staphylococcus aureus fatty acid kinase2 (fak) b1 protein loaded with palmitic acid to 1.83 angstrom3 resolution
8c3nyiA_
100.0 22
PDB header:lipid binding protein
Chain: A: PDB Molecule:fat acid-binding protein;
PDBTitle: the crystal structure of a fat acid (stearic acid)-binding protein2 from eubacterium ventriosum atcc 27560.
9c6dj6B_
100.0 21
PDB header:transferase
Chain: B: PDB Molecule:fatty acid kinase (fak) b2 protein (spr1019);
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b2 protein loaded with cis-oleic acid to 1.9 angstrom3 resolution
10c2g7zB_
100.0 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein spy1493;
PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids
11c3fdjA_
100.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:degv family protein;
PDBTitle: the structure of a degv family protein from eubacterium eligens.
12c4x9xA_
100.0 26
PDB header:transferase
Chain: A: PDB Molecule:degv domain-containing protein mw1315;
PDBTitle: biochemical roles for conserved residues in the bacterial fatty acid2 binding protein family
13c3jr7A_
100.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized egv family protein cog1307;
PDBTitle: the crystal structure of the protein of degv family cog1307 with2 unknown function from ruminococcus gnavus atcc 29149
14c3pl5A_
100.0 24
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: fatty acid binding protein
15d1mgpa_
100.0 22
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
16c1mgpA_
100.0 22
PDB header:lipid binding protein
Chain: A: PDB Molecule:hypothetical protein tm841;
PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function
17c3eglC_
100.0 33
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:degv family protein;
PDBTitle: crystal structure of degv family protein cg2579 from corynebacterium2 glutamicum
18c3gx1A_
95.9 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1832 protein;
PDBTitle: crystal structure of a domain of lin1832 from listeria innocua
19d3ct6a1
93.9 10
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:DhaM-like
20c3gdwA_
79.4 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sigma-54 interaction domain protein;
PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis
21d3beda1
not modelled 67.7 15
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
22c1un9B_
not modelled 64.7 29
PDB header:kinase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: crystal structure of the dihydroxyacetone kinase from c.2 freundii in complex with amp-pnp and mg2+
23c3iprC_
not modelled 56.6 20
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
24d1oi2a_
not modelled 56.5 17
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
25d1un8a4
not modelled 55.0 19
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
26c3ostA_
not modelled 54.6 9
PDB header:lipid binding protein
Chain: A: PDB Molecule:serine/threonine-protein kinase kcc4;
PDBTitle: structure of the kinase associated-1 (ka1) from kcc4p
27c2qv5A_
not modelled 54.4 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu2773;
PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58
28c4ikgA_
not modelled 52.3 12
PDB header:apoptosis
Chain: A: PDB Molecule:cell death activator cide-3;
PDBTitle: crystal structure of cell death-inducing dffa-like effector c
29c4tkzA_
not modelled 50.0 11
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein gbs1890;
PDBTitle: crystal structure of phosphotransferase system component eiia from2 streptococcus agalactiae
30c2do6A_
not modelled 49.8 19
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
31c2d9sA_
not modelled 49.7 19
PDB header:ligase
Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase;
PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
32c2jnhA_
not modelled 48.5 19
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
33d2fi9a1
not modelled 47.2 12
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
34c4u10B_
not modelled 44.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase;
PDBTitle: probing the structure and mechanism of de-n-acetylase from2 aggregatibacter actinomycetemcomitans
35c3orsD_
not modelled 44.4 16
PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
36c2eelA_
not modelled 44.1 13
PDB header:apoptosis
Chain: A: PDB Molecule:cell death activator cide-a;
PDBTitle: solution structure of the cide-n domain of human cell death2 activator cide-a
37c4d2kB_
not modelled 43.5 18
PDB header:apoptosis
Chain: B: PDB Molecule:drep2;
PDBTitle: crystal structure of drep2 cide domain
38c1zowB_
not modelled 42.6 21
PDB header:transferase
Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase iii;
PDBTitle: crystal structure of s. aureus fabh, beta-ketoacyl carrier protein2 synthase iii
39d1d4ba_
not modelled 42.2 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
40c1sjiA_
not modelled 39.9 8
PDB header:metal binding protein
Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform;
PDBTitle: comparing skeletal and cardiac calsequestrin structures and their2 calcium binding: a proposed mechanism for coupled calcium binding and3 protein polymerization
41c3iz5s_
not modelled 37.5 14
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
42d1hnja1
not modelled 35.2 26
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
43c2iu6B_
not modelled 34.8 11
PDB header:transferase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: regulation of the dha operon of lactococcus lactis
44c5t3uA_
not modelled 32.6 11
PDB header:transport protein
Chain: A: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the pts iia protein associated with the fucose2 utilization operon from streptococcus pneumoniae
45c3izcs_
not modelled 32.0 13
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
46c3jsyA_
not modelled 31.2 17
PDB header:ribosomal protein
Chain: A: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: n-terminal fragment of ribosomal protein l10 from methanococcus2 jannaschii
47c5xpcD_
not modelled 30.7 16
PDB header:apoptosis
Chain: D: PDB Molecule:dnaation factor-related protein 4;
PDBTitle: crystal structure of drep4 cide domain
48c1ibxB_
not modelled 30.6 18
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:chimera of igg binding protein g and dna
PDBTitle: nmr structure of dff40 and dff45 n-terminal domain complex
49d1ibxb_
not modelled 30.6 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
50d1xnga1
not modelled 27.9 10
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
51c1a8yA_
not modelled 27.2 6
PDB header:calcium-binding protein
Chain: A: PDB Molecule:calsequestrin;
PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution
52c6dq3B_
not modelled 26.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:polysaccharide deacetylase;
PDBTitle: streptococcus pyogenes deacetylase pdi in complex with acetate
53c5i1tA_
not modelled 26.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:stage ii sporulation protein d;
PDBTitle: 2.6 angstrom resolution crystal structure of stage ii sporulation2 protein d (spoiid) from clostridium difficile in complex with3 triacetylchitotriose
54c6cwxA_
not modelled 26.4 8
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease p protein subunit p20;
PDBTitle: crystal structure of human ribonuclease p/mrp proteins rpp20/rpp25
55c6fmgC_
not modelled 26.3 16
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
56c4rwrB_
not modelled 25.6 23
PDB header:viral protein
Chain: B: PDB Molecule:stage ii sporulation protein d;
PDBTitle: 2.1 angstrom crystal structure of stage ii sporulation protein d from2 bacillus anthracis
57d1vz0a1
not modelled 25.2 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
58c5lwcA_
not modelled 24.7 4
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin bacsp222;
PDBTitle: nmr solution structure of bacteriocin bacsp222 from staphylococcus2 pseudintermedius 222
59c2ov6A_
not modelled 21.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase subunit f;
PDBTitle: the nmr structure of subunit f of the methanogenic a1ao atp synthase2 and its interaction with the nucleotide-binding subunit b
60d2fvta1
not modelled 21.8 8
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
61c3j3bq_
not modelled 20.6 11
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
62c1r71B_
not modelled 18.8 19
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
63d1c9fa_
not modelled 18.7 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
64d1r71a_
not modelled 18.2 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
65c1fvoB_
not modelled 18.1 20
PDB header:transferase
Chain: B: PDB Molecule:ornithine transcarbamylase;
PDBTitle: crystal structure of human ornithine transcarbamylase complexed with2 carbamoyl phosphate
66c5xceB_
not modelled 17.8 23
PDB header:transport protein
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 29;
PDBTitle: crystal structure of wild type vps29 from entamoeba histolytica
67c5l7aA_
not modelled 17.5 19
PDB header:dna binding protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: the crystal structure of the human snf5/ini1 domain
68c1hyuA_
not modelled 17.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
69c2e18B_
not modelled 16.9 25
PDB header:ligase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: crystal structure of project ph0182 from pyrococcus horikoshii ot3
70c2qnxA_
not modelled 16.7 25
PDB header:transferase
Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3;
PDBTitle: crystal structure of the complex between the mycobacterium beta-2 ketoacyl-acyl carrier protein synthase iii (fabh) and 11-3 [(decyloxycarbonyl)dithio]-undecanoic acid
71c2wshC_
not modelled 16.6 10
PDB header:hydrolase
Chain: C: PDB Molecule:endonuclease ii;
PDBTitle: structure of bacteriophage t4 endoii e118a mutant
72c2i6oA_
not modelled 16.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine
PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n
73d1f2ri_
not modelled 16.1 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
74c3lfhF_
not modelled 16.0 9
PDB header:transferase
Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific
PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis
75c4xgjA_
not modelled 15.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a domain of unknown function (duf1537) from2 pectobacterium atrosepticum (eca3761), target efi-511609, apo3 structure, domain swapped dimer
76d1ewqa4
not modelled 14.8 16
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
77d1pj3a1
not modelled 14.7 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
78c2gm2A_
not modelled 14.7 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35
79d1pdoa_
not modelled 14.5 16
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
80d1mkza_
not modelled 13.8 19
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
81c5dxlA_
not modelled 13.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:trehalose-6-phosphate phosphatase;
PDBTitle: structure of aspergillus fumigatus trehalose-6-phosphate phosphatase2 crystal form 1
82c3fiuD_
not modelled 13.1 14
PDB header:ligase
Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nmn synthetase from francisella tularensis
83c4f78A_
not modelled 13.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:d,d-dipeptidase/d,d-carboxypeptidase;
PDBTitle: crystal structure of vancomycin resistance d,d-dipeptidase vanxyg
84d3efxd1
not modelled 13.0 21
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
85c1fokA_
not modelled 12.9 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein (foki restriction endonucleas);
PDBTitle: structure of restriction endonuclease foki bound to dna
86c3bxwB_
not modelled 12.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:chitinase domain-containing protein 1;
PDBTitle: crystal structure of stabilin-1 interacting chitinase-like protein,2 si-clp
87c4q6qA_
not modelled 12.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structural analysis of the zn-form ii of helicobacter pylori csd4, a2 d,l-carboxypeptidase
88d3b48a1
not modelled 12.7 9
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:DhaM-like
89d1l5ja2
not modelled 11.6 40
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
90d1vlva1
not modelled 11.5 16
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
91c3zhiA_
not modelled 11.5 9
PDB header:transcription
Chain: A: PDB Molecule:ci;
PDBTitle: n-terminal domain of the ci repressor from bacteriophage tp901-1
92c3ct4B_
not modelled 11.2 15
PDB header:transferase
Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, dihydroxyacetone-
PDBTitle: structure of dha-kinase subunit dhak from l. lactis
93c1ortD_
not modelled 11.2 18
PDB header:transferase
Chain: D: PDB Molecule:ornithine transcarbamoylase;
PDBTitle: ornithine transcarbamoylase from pseudomonas aeruginosa
94d1w7ab4
not modelled 11.2 11
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
95d1zpda1
not modelled 11.1 14
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
96d1xi8a3
not modelled 11.1 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
97d1qcza_
not modelled 10.8 17
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
98d1s3la_
not modelled 10.2 23
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:YfcE-like
99c1s3mA_
not modelled 10.2 23
PDB header:phosphodiesterase
Chain: A: PDB Molecule:hypothetical protein mj0936;
PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below