Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2420c_(-)_2717806_2718186
DateWed Aug 7 12:50:04 BST 2019
Unique Job ID4855e2830b864732
SequenceMTANREAIDM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.702 Y:36.881 Z:29.460
Model (left) based on template c4wcwB_
Top template information
PDB header:translation
Chain: B: PDB Molecule:ribosomal silencing factor rsfs;
PDBTitle: ribosomal silencing factor during starvation or stationary phase2 (rsfs) from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 89%
112 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4wcwB_



100.0 99
PDB header:translation
Chain: B: PDB Molecule:ribosomal silencing factor rsfs;
PDBTitle: ribosomal silencing factor during starvation or stationary phase2 (rsfs) from mycobacterium tuberculosis
2d2id1a1



100.0 28
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
3c3upsA_



100.0 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
4d2o5aa1



100.0 34
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
5c5oomu_



100.0 25
PDB header:ribosome
Chain: U: PDB Molecule:39s ribosomal protein l23, mitochondrial;
PDBTitle: structure of a native assembly intermediate of the human mitochondrial2 ribosome with unfolded interfacial rrna
6c2omdB_



66.0 15
PDB header:lyase
Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5
7d1n0ua4



47.2 11
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
8d1ex9a_



43.6 25
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
9d2dy1a4



37.0 8
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
10d2bm0a4



33.8 8
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
11c5z58C_



32.9 14
PDB header:splicing
Chain: C: PDB Molecule:116 kda u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
12c2qieA_



26.7 11
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex with precursor2 z
13c3fniA_



25.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
14c3b8hA_



24.8 11
PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
15d1fm0e_



24.5 17
Fold:alpha/beta-Hammerhead
Superfamily:Molybdopterin synthase subunit MoaE
Family:Molybdopterin synthase subunit MoaE
16c3hlyA_



24.1 11
PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from synechococcus sp2 q5mzp6_synp6 protein. northeast structural genomics consortium target3 snr135d.
17d1lk5a2



23.7 8
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
18c6jc0D_



23.4 16
PDB header:transferase
Chain: D: PDB Molecule:putative molybdenum cofactor biosynthesis protein;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
19c5mqfB_



22.9 14
PDB header:splicing
Chain: B: PDB Molecule:116 kda u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
20c3jb9B_



22.3 14
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:pre-mrna-splicing factor cwf10;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
21d1vmea1



not modelled 22.1 9
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
22c2xexA_



not modelled 21.8 3
PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
23c6jbzC_



not modelled 21.2 15
PDB header:transferase
Chain: C: PDB Molecule:molybdenum cofactor biosynthesis protein e;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
24c3j38z_



not modelled 20.7 11
PDB header:ribosome
Chain: Z: PDB Molecule:40s ribosomal protein s25;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
25d1e4ea1



not modelled 18.5 16
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:D-Alanine ligase N-terminal domain
26c2pjmA_



not modelled 17.6 14
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
27d1xpja_



not modelled 17.5 16
Fold:HAD-like
Superfamily:HAD-like
Family:Hypothetical protein VC0232
28d2arka1



not modelled 16.1 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
29d1e5da1



not modelled 16.1 14
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
30c6h0cA_



not modelled 16.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: flv1 flavodiiron core from synechocystis sp. pcc6803
31c4gmkB_



not modelled 16.1 16
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118
32c3dnpA_



not modelled 15.7 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:stress response protein yhax;
PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis
33c3jcrB_



not modelled 14.9 14
PDB header:splicing
Chain: B: PDB Molecule:hsnu114;
PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
34d1kqfa1



not modelled 14.6 10
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
35d1mp9a1



not modelled 14.5 11
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
36c1lk5C_



not modelled 14.4 8
PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
37c2rdo7_



not modelled 14.1 3
PDB header:ribosome
Chain: 7: PDB Molecule:elongation factor g;
PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
38d2bfdb2



not modelled 14.0 25
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
39c5dxlA_



not modelled 14.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:trehalose-6-phosphate phosphatase;
PDBTitle: structure of aspergillus fumigatus trehalose-6-phosphate phosphatase2 crystal form 1
40c4fn5A_



not modelled 13.9 6
PDB header:translation/antibiotic
Chain: A: PDB Molecule:elongation factor g 1;
PDBTitle: elongation factor g 1 (pseudomonas aeruginosa) in complex with argyrin2 b
41c6notB_



not modelled 13.9 6
PDB header:translation
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of a full length elongation factor g (ef-g) from2 rickettsia prowazekii
42d2obba1



not modelled 13.8 20
Fold:HAD-like
Superfamily:HAD-like
Family:BT0820-like
43d1w4xa1



not modelled 13.5 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
44c5lj3C_



not modelled 13.3 13
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
45c3b6iB_



not modelled 12.7 35
PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
46d2hd3a1



not modelled 12.7 28
Fold:OB-fold
Superfamily:EutN/CcmL-like
Family:EutN/CcmL-like
47d1wzca1



not modelled 12.3 10
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
48c1olsB_



not modelled 12.1 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit;
PDBTitle: roles of his291-alpha and his146-beta' in the reductive acylation2 reaction catalyzed by human branched-chain alpha-ketoacid3 dehydrogenase
49d1ycga1



not modelled 12.0 11
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
50c3w7aD_



not modelled 11.3 29
PDB header:oxidoreductase
Chain: D: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of azoreductase azrc fin complex with sulfone-2 modified azo dye acid red 88
51c6jy5B_



not modelled 11.0 23
PDB header:structural protein
Chain: B: PDB Molecule:unidentified carboxysome polypeptide;
PDBTitle: structure of csos4b from halothiobacillus neapolitanus
52c3hheA_



not modelled 10.7 9
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae
53c2bm0A_



not modelled 10.6 6
PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant mutant2 t84a
54c3tr5C_



not modelled 10.6 9
PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
55c5b3kA_



not modelled 10.6 10
PDB header:electron transport
Chain: A: PDB Molecule:uncharacterized protein pa3435;
PDBTitle: c101a mutant of flavodoxin from pseudomonas aeruginosa
56c1zn0B_



not modelled 10.5 6
PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf
57d1llda1



not modelled 10.3 10
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
58d2z1ca1



not modelled 10.1 6
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
59c5h7lB_



not modelled 10.0 8
PDB header:translation/ribosomal protein
Chain: B: PDB Molecule:elongation factor 2;
PDBTitle: complex of elongation factor 2-50s ribosomal protein l12
60c2c5iP_



not modelled 10.0 67
PDB header:protein transport
Chain: P: PDB Molecule:vacuolar protein sorting protein 51;
PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation
61c4hg1C_



not modelled 9.5 31
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative cytoplasmic protein;
PDBTitle: crystal structure of uncharacterized protein from salmonella enterica2 subsp. enterica serovar typhimurium str. 14028s
62c2c5kP_



not modelled 9.5 67
PDB header:protein transport
Chain: P: PDB Molecule:vacuolar protein sorting protein 51;
PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51
63c5zbyA_



not modelled 9.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:hydrogenase maturation protease hyci;
PDBTitle: crystal structure of a [nife] hydrogenase maturation protease hyci2 from thermococcus kodakarensis kod1
64c5c0vA_



not modelled 9.4 30
PDB header:rna binding protein
Chain: A: PDB Molecule:la-related protein 1;
PDBTitle: structure of the larp1-unique domain dm15
65d2qw7a1



not modelled 9.0 29
Fold:OB-fold
Superfamily:EutN/CcmL-like
Family:EutN/CcmL-like
66c3vr1B_



not modelled 8.9 11
PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor 3;
PDBTitle: crystal structure analysis of the translation factor rf3
67c3zupB_



not modelled 8.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:mannosyl-3-phosphoglycerate phosphatase;
PDBTitle: the 3-dimensional structure of mpgp from thermus2 thermophilus hb27, in complex with the alpha-3 mannosylglycerate and orthophosphate reaction products.
68c3niwA_



not modelled 8.7 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase from2 bacteroides thetaiotaomicron
69d2fz5a1



not modelled 8.6 18
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
70d1nrwa_



not modelled 8.6 21
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
71d1qnaa1



not modelled 8.5 7
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
72d1uj4a2



not modelled 8.4 13
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
73d1a5za1



not modelled 8.4 7
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
74c5l37E_



not modelled 8.4 24
PDB header:structural protein
Chain: E: PDB Molecule:msm0273;
PDBTitle: the structure of the pentameric shell protein msm0273 from the rmm2 microcompartment
75d2ot2a1



not modelled 8.3 19
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
76c5ancK_



not modelled 8.2 8
PDB header:translation
Chain: K: PDB Molecule:elongation factor tu gtp-binding domain-containing protein
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
77c3l7oB_



not modelled 8.2 17
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
78c5ganC_



not modelled 8.1 13
PDB header:transcription
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
79c1xjqA_



not modelled 8.0 15
PDB header:transferase
Chain: A: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: adp complex of human paps synthetase 1
80c3pgvB_



not modelled 7.9 37
PDB header:hydrolase
Chain: B: PDB Molecule:haloacid dehalogenase-like hydrolase;
PDBTitle: crystal structure of a haloacid dehalogenase-like hydrolase2 (kpn_04322) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at3 2.39 a resolution
81c6j1kA_



not modelled 7.9 15
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from ochrobactrum2 sp. csl1
82c6cl4A_



not modelled 7.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:lipase c12;
PDBTitle: lipc12 - lipase from metagenomics
83c5mp4C_



not modelled 7.7 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:protoplast secreted protein 2;
PDBTitle: the structure of pst2p from saccharomyces cerevisiae
84d1nf2a_



not modelled 7.7 21
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
85d1nh2a1



not modelled 7.6 6
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
86c2mmvA_



not modelled 7.6 12
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein zapa;
PDBTitle: zapa mutant dimer from geobacillus stearothermophilus
87d1aisa1



not modelled 7.5 11
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
88d1xvia_



not modelled 7.5 5
Fold:HAD-like
Superfamily:HAD-like
Family:Predicted hydrolases Cof
89c1xviA_



not modelled 7.5 5
PDB header:hydrolase
Chain: A: PDB Molecule:putative mannosyl-3-phosphoglycerate phosphatase;
PDBTitle: crystal structure of yedp, phosphatase-like domain protein2 from escherichia coli k12
90d3d3ra1



not modelled 7.4 19
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
91d1k8kd1



not modelled 7.3 18
Fold:Secretion chaperone-like
Superfamily:Arp2/3 complex subunits
Family:Arp2/3 complex subunits
92c4jw0A_



not modelled 7.3 26
PDB header:structural protein
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein;
PDBTitle: structure of gloeobacter violaceus ccml
93c4q86B_



not modelled 7.2 9
PDB header:protein binding
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase accessory
PDBTitle: ycao with amp bound
94c2zf8A_



not modelled 7.2 11
PDB header:structural protein
Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor;
PDBTitle: crystal structure of moty
95c3e5nA_



not modelled 7.2 13
PDB header:ligase
Chain: A: PDB Molecule:d-alanine-d-alanine ligase a;
PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331
96d2fi9a1



not modelled 7.1 11
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
97d1pj3a2



not modelled 7.0 20
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
98d1o0sa2



not modelled 7.0 20
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
99c3gygA_



not modelled 7.0 10
PDB header:hydrolase
Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb;
PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis

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