Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2421c_(nadD)_2718183_2718818
DateWed Aug 7 12:50:04 BST 2019
Unique Job ID165c57d0189fdf4f
SequenceMGGTFDPIHY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.934 Y:54.268 Z:38.341
Model (left) based on template c1yunB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:probable nicotinate-nucleotide
PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa
Confidence and coverage
Confidence:100.0% Coverage: 91%
192 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1yunB_



100.0 32
PDB header:transferase
Chain: B: PDB Molecule:probable nicotinate-nucleotide
PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa
2d1k4ma_



100.0 31
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
3c4wsoA_



100.0 39
PDB header:transferase
Chain: A: PDB Molecule:probable nicotinate-nucleotide adenylyltransferase;
PDBTitle: x-ray crystal structure of a nicotinate nucleotide adenylyltransferase2 from burkholderia thailandensis bound to nad
4d1kr2a_



100.0 24
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
5c4rpiA_



100.0 99
PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide adenylyltransferase;
PDBTitle: crystal structure of nicotinate mononucleotide adenylyltransferase2 from mycobacterium tuberculosis
6d1nuua_



100.0 23
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
7d1kama_



100.0 40
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
8c3e27B_



100.0 39
PDB header:transferase
Chain: B: PDB Molecule:nicotinate (nicotinamide) nucleotide adenylyltransferase;
PDBTitle: nicotinic acid mononucleotide (namn) adenylyltransferase from bacillus2 anthracis: product complex
9c2h29A_



100.0 34
PDB header:transferase
Chain: A: PDB Molecule:probable nicotinate-nucleotide
PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from staphylococcus aureus: product3 bound form 1
10c5lltB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:nicotinate-nucleotide adenylyltransferase;
PDBTitle: plasmodium falciparum nicotinic acid mononucleotide2 adenylyltransferase complexed with naad
11d1od6a_



100.0 21
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
12d1tfua_



100.0 19
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
13d1vlha_



100.0 21
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
14d1o6ba_



100.0 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
15c5h16D_



100.0 20
PDB header:transferase
Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of the complex of phosphopantetheine2 adenylyltransferase from acinetobacter baumannii with citrate at 2.33 a resolution.
16c3ikzA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei
17c3x1mC_



100.0 22
PDB header:transferase
Chain: C: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase/ppat from2 pseudomonas aeruginosa with coa
18c3f3mA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: six crystal structures of two phosphopantetheine adenylyltransferases2 reveal an alternative ligand binding mode and an associated3 structural change
19c3nd5D_



100.0 20
PDB header:transferase
Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis
20d1qjca_



100.0 21
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
21c4f3rC_



not modelled 100.0 18
PDB header:transferase
Chain: C: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: structure of phosphopantetheine adenylyltransferase (cbu_0288) from2 coxiella burnetii
22c3nv7A_



not modelled 100.0 17
PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of h.pylori phosphopantetheine adenylyltransferase2 mutant i4v/n76y
23d1f9aa_



not modelled 100.0 19
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
24d1ej2a_



not modelled 100.0 19
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
25c3h05A_



not modelled 100.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vpa0413;
PDBTitle: the crystal structure of a putative nicotinate-nucleotide2 adenylyltransferase from vibrio parahaemolyticus
26c2qjoB_



not modelled 100.0 16
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase;
PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
27c6gyeB_



not modelled 100.0 21
PDB header:transport protein
Chain: B: PDB Molecule:nicotinamide-nucleotide adenylyltransferase nadr family /
PDBTitle: crystal structure of nadr protein in complex with nr
28c2r5wA_



not modelled 99.9 14
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase;
PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
29c1lw7A_



not modelled 99.8 20
PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulator nadr;
PDBTitle: nadr protein from haemophilus influenzae
30d1lw7a1



not modelled 99.8 19
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
31d1mrza2



not modelled 99.8 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
32c2b7lD_



not modelled 99.7 19
PDB header:transferase
Chain: D: PDB Molecule:glycerol-3-phosphate cytidylyltransferase;
PDBTitle: crystal structure of ctp:glycerol-3-phosphate2 cytidylyltransferase from staphylococcus aureus
33d1coza_



not modelled 99.6 22
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Cytidylyltransferase
34c5y0tD_



not modelled 99.5 16
PDB header:ligase
Chain: D: PDB Molecule:thermotoga maritima tmcal;
PDBTitle: crystal structure of thermotoga maritima tmcal bound with alpha-thio2 atp(form ii)
35c4zcsE_



not modelled 99.5 20
PDB header:transferase
Chain: E: PDB Molecule:choline-phosphate cytidylyltransferase;
PDBTitle: crystal structure of the c-terminal catalytic domain of plasmodium2 falciparum ctp:phosphocholine cytidylyltransferase in complex with3 cdp-choline
36c5y0nB_



not modelled 99.5 18
PDB header:ligase
Chain: B: PDB Molecule:upf0348 protein b4417_3650;
PDBTitle: crystal structure of bacillus subtilis tmcal bound with atp (semet2 derivative)
37c3gmiA_



not modelled 99.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0348 protein mj0951;
PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii
38c5xf2B_



not modelled 99.3 17
PDB header:transferase
Chain: B: PDB Molecule:putative cytidylyltransferase;
PDBTitle: crystal structure of semet-hldc from burkholderia pseudomallei
39c3do8B_



not modelled 99.3 26
PDB header:transferase
Chain: B: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: the crystal structure of the protein with unknown function from2 archaeoglobus fulgidus
40c3glvB_



not modelled 99.1 24
PDB header:biosynthetic protein
Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein;
PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1
41c1t6zB_



not modelled 99.1 19
PDB header:transferase
Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase;
PDBTitle: crystal structure of riboflavin bound tm379
42c3op1A_



not modelled 99.1 18
PDB header:transferase
Chain: A: PDB Molecule:macrolide-efflux protein;
PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
43c3elbA_



not modelled 99.0 22
PDB header:transferase
Chain: A: PDB Molecule:ethanolamine-phosphate cytidylyltransferase;
PDBTitle: human ctp: phosphoethanolamine cytidylyltransferase in complex with2 cmp
44c2x0kB_



not modelled 98.9 17
PDB header:transferase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf;
PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes
45c3hl4B_



not modelled 98.9 25
PDB header:transferase
Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a;
PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline
46d1jhda2



not modelled 98.8 18
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
47c1jhdA_



not modelled 98.7 15
PDB header:transferase
Chain: A: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: crystal structure of bacterial atp sulfurylase from the2 riftia pachyptila symbiont
48d1x6va2



not modelled 98.6 13
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
49c2qjfB_



not modelled 98.6 13
PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-
PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1
50c5x3dA_



not modelled 98.5 25
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate phosphomutase;
PDBTitle: crystal structure of hep-cmp-bound form of cytidylyltransferase2 (cytase) domain of fom1 from streptomyces wedmorensis
51d1g8fa2



not modelled 98.4 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
52d1v47a2



not modelled 98.4 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
53c1r6xA_



not modelled 98.4 15
PDB header:transferase
Chain: A: PDB Molecule:atp:sulfate adenylyltransferase;
PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate
54c3cr8C_



not modelled 98.3 15
PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltransferase, adenylylsulfate kinase;
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
55c4mvcA_



not modelled 98.3 19
PDB header:transferase
Chain: A: PDB Molecule:choline-phosphate cytidylyltransferase a;
PDBTitle: crystal structure of a mammalian cytidylyltransferase
56c1g8gB_



not modelled 98.3 13
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps
57c1m8pB_



not modelled 98.3 13
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
58c1xjqA_



not modelled 98.2 14
PDB header:transferase
Chain: A: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: adp complex of human paps synthetase 1
59d1m8pa2



not modelled 98.1 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
60c1xnjB_



not modelled 98.1 13
PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
61c2gksB_



not modelled 97.9 13
PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
62c1v47B_



not modelled 97.8 17
PDB header:transferase
Chain: B: PDB Molecule:atp sulfurylase;
PDBTitle: crystal structure of atp sulfurylase from thermus2 thermophillus hb8 in complex with aps
63c4mafH_



not modelled 96.3 14
PDB header:transferase
Chain: H: PDB Molecule:atp sulfurylase;
PDBTitle: soybean atp sulfurylase
64c3guzB_



not modelled 96.2 18
PDB header:ligase
Chain: B: PDB Molecule:pantothenate synthetase;
PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's
65c3ag5A_



not modelled 92.0 20
PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus
66d1v8fa_



not modelled 91.8 22
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
67c2ejcA_



not modelled 91.1 22
PDB header:ligase
Chain: A: PDB Molecule:pantoate--beta-alanine ligase;
PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima
68d1ihoa_



not modelled 91.0 20
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
69c3n8hA_



not modelled 90.2 16
PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine ligase from francisella2 tularensis
70c3innB_



not modelled 88.7 21
PDB header:ligase
Chain: B: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution
71c5kwvA_



not modelled 88.5 21
PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of a pantoate-beta-alanine ligase from neisseria2 gonorrhoeae with bound amppnp
72c3uk2B_



not modelled 88.3 18
PDB header:ligase
Chain: B: PDB Molecule:pantothenate synthetase;
PDBTitle: the structure of pantothenate synthetase from burkholderia2 thailandensis
73d2a84a1



not modelled 85.4 28
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
74c3mxtA_



not modelled 79.0 20
PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine ligase from campylobacter2 jejuni
75c4wv4A_



not modelled 43.3 23
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 10;
PDBTitle: heterodimer of taf8/taf10
76c3ktmB_



not modelled 34.0 13
PDB header:cell adhesion, signaling protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: structure of the heparin-induced e1-dimer of the amyloid precursor2 protein (app)
77c2w48D_



not modelled 32.8 13
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
78c3hv0A_



not modelled 32.6 16
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum
79d1mwpa_



not modelled 31.1 13
Fold:SRCR-like
Superfamily:A heparin-binding domain
Family:A heparin-binding domain
80c3sp1B_



not modelled 27.9 7
PDB header:ligase
Chain: B: PDB Molecule:cysteinyl-trna synthetase;
PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi
81c4j75B_



not modelled 22.8 19
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of a parasite trna synthetase, product-bound
82c3c8zB_



not modelled 21.1 11
PDB header:ligase
Chain: B: PDB Molecule:cysteinyl-trna synthetase;
PDBTitle: the 1.6 a crystal structure of mshc: the rate limiting2 enzyme in the mycothiol biosynthetic pathway
83c1u0bB_



not modelled 20.8 19
PDB header:ligase/rna
Chain: B: PDB Molecule:cysteinyl trna;
PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys
84c1r6tA_



not modelled 19.7 15
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of human tryptophanyl-trna synthetase
85d1iq0a2



not modelled 18.9 21
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
86c5ykrB_



not modelled 16.8 24
PDB header:transferase
Chain: B: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a glutamate-1-semialdehyde-aminomutase from2 pseudomonas aeruginosa pao1
87c3focB_



not modelled 16.5 17
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from giardia lamblia
88d1v32a_



not modelled 16.2 22
Fold:SWIB/MDM2 domain
Superfamily:SWIB/MDM2 domain
Family:SWIB/MDM2 domain
89c6byqA_



not modelled 16.1 19
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of tyrosine-trna ligase from helicobacter pylori g27
90d1v31a_



not modelled 15.8 16
Fold:SWIB/MDM2 domain
Superfamily:SWIB/MDM2 domain
Family:SWIB/MDM2 domain
91c4zm3C_



not modelled 14.1 27
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of plp-dependent 3-aminobenzoate synthase pctv wild-2 type
92c3tqoA_



not modelled 14.1 13
PDB header:ligase
Chain: A: PDB Molecule:cysteinyl-trna synthetase;
PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii.
93d1uyra1



not modelled 13.8 15
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
94c3jxeB_



not modelled 13.5 10
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp
95d2izva1



not modelled 13.4 16
Fold:SOCS box-like
Superfamily:SOCS box-like
Family:SOCS box-like
96c3a05A_



not modelled 13.2 15
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan
97c5ixiA_



not modelled 13.1 7
PDB header:cytokine
Chain: A: PDB Molecule:tyrosine-protein kinase jak1;
PDBTitle: structure of human jak1 ferm/sh2 in complex with ifnlr1/il10ra chimera
98d1uhra_



not modelled 12.1 23
Fold:SWIB/MDM2 domain
Superfamily:SWIB/MDM2 domain
Family:SWIB/MDM2 domain
99c3fnrA_



not modelled 12.0 21
PDB header:transferase
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of putative arginyl t-rna synthetase from2 campylobacter jejuni;

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