Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2425c_(-)_2721876_2723318
DateWed Aug 7 12:50:04 BST 2019
Unique Job ID7bdaaa052e8177e2
SequenceVAARRIRAAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.015 Y:40.553 Z:42.811
Model (left) based on template c2i6sA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:complement c2a fragment;
PDBTitle: complement component c2a
Confidence and coverage
Confidence: 99.0% Coverage: 36%
172 residues ( 36% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2i6sA_



99.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:complement c2a fragment;
PDBTitle: complement component c2a
2d2ok5a1



98.9 10
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
3c4hqnB_



98.9 14
PDB header:cell adhesion
Chain: B: PDB Molecule:sporozoite surface protein 2;
PDBTitle: crystal structure of manganese-loaded plasmodium vivax trap protein
4c4fx5A_



98.8 14
PDB header:blood clotting
Chain: A: PDB Molecule:von willebrand factor type a;
PDBTitle: von willebrand factor type a from catenulispora acidiphila
5d1yvra2



98.8 15
Fold:vWA-like
Superfamily:vWA-like
Family:RoRNP C-terminal domain-like
6c1rs0A_



98.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:complement factor b;
PDBTitle: crystal structure analysis of the bb segment of factor b2 complexed with di-isopropyl-phosphate (dip)
7c4wfqA_



98.7 13
PDB header:transcription
Chain: A: PDB Molecule:suppressor of stem-loop protein 1;
PDBTitle: crystal structure of tfiih subunit
8c5iy70_



98.7 13
PDB header:transcription, transferase/dna
Chain: 0: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the open state
9c2nvoA_



98.7 17
PDB header:rna binding protein
Chain: A: PDB Molecule:ro sixty-related protein, rsr;
PDBTitle: crystal structure of deinococcus radiodurans ro (rsr) protein
10c3ibsA_



98.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein batb;
PDBTitle: crystal structure of conserved hypothetical protein batb from2 bacteroides thetaiotaomicron
11c2ok5A_



98.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:complement factor b;
PDBTitle: human complement factor b
12c6fpzA_



98.6 13
PDB header:structural protein
Chain: A: PDB Molecule:inter-alpha-trypsin inhibitor heavy chain h1;
PDBTitle: inter-alpha-inhibitor heavy chain 1, d298a
13c4rckB_



98.6 15
PDB header:membrane protein
Chain: B: PDB Molecule:hypothetical membrane spanning protein;
PDBTitle: crystal structure of uncharacterized membrane spanning protein from2 vibrio fischeri
14c2x31F_



98.5 17
PDB header:ligase
Chain: F: PDB Molecule:magnesium-chelatase 60 kda subunit;
PDBTitle: modelling of the complex between subunits bchi and bchd of magnesium2 chelatase based on single-particle cryo-em reconstruction at 7.5 ang
15c5a8jA_



98.4 13
PDB header:transcription
Chain: A: PDB Molecule:vwa2;
PDBTitle: crystal structure of the arnb paralog vwa2 from2 sulfolobus acidocaldarius
16c4hqfA_



98.4 14
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-related anonymous protein, trap;
PDBTitle: crystal structure of plasmodium falciparum trap, i4 form
17c4okuA_



98.3 10
PDB header:cell adhesion
Chain: A: PDB Molecule:micronemal protein mic2;
PDBTitle: structure of toxoplasma gondii promic2
18c1yvrA_



98.3 16
PDB header:rna binding protein
Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein;
PDBTitle: ro autoantigen
19d1shux_



98.2 17
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
20c6o9l6_



98.1 15
PDB header:transcription/dna
Chain: 6: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the closed state
21c2xggB_



not modelled 98.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:microneme protein 2;
PDBTitle: structure of toxoplasma gondii micronemal protein 2 a_i2 domain
22c2iueA_



not modelled 98.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:pactolus i-domain;
PDBTitle: pactolus i-domain: functional switching of the rossmann2 fold
23c2b2xB_



not modelled 98.0 10
PDB header:immune system
Chain: B: PDB Molecule:integrin alpha-1;
PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab
24c6nmiE_



not modelled 98.0 16
PDB header:transcription
Chain: E: PDB Molecule:general transcription factor iih subunit 2, p44;
PDBTitle: cryo-em structure of the human tfiih core complex
25c5oqj6_



not modelled 98.0 15
PDB header:transcription
Chain: 6: PDB Molecule:suppressor of stem-loop protein 1;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
26d1v7pc_



not modelled 98.0 12
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
27c4b4tW_



not modelled 98.0 11
PDB header:hydrolase
Chain: W: PDB Molecule:26s proteasome regulatory subunit rpn10;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
28c2x5nA_



not modelled 97.9 9
PDB header:nuclear protein
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn10;
PDBTitle: crystal structure of the sprpn10 vwa domain
29d1jeya2



not modelled 97.9 8
Fold:vWA-like
Superfamily:vWA-like
Family:Ku70 subunit N-terminal domain
30c3n2nC_



not modelled 97.9 13
PDB header:toxin receptor
Chain: C: PDB Molecule:anthrax toxin receptor 1;
PDBTitle: the crystal structure of tumor endothelial marker 8 (tem8)2 extracellular domain
31c6bxjA_



not modelled 97.9 18
PDB header:cell adhesion
Chain: A: PDB Molecule:chimera protein of integrin beta-3 and integrin alpha-l;
PDBTitle: structure of a single-chain beta3 integrin
32c6bxfA_



not modelled 97.9 18
PDB header:cell adhesion
Chain: A: PDB Molecule:chimera protein of integrin beta-3 and integrin alpha-l;
PDBTitle: crystal structure of an extended b3 integrin l33
33d1pt6a_



not modelled 97.9 11
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
34d1jeyb2



not modelled 97.8 12
Fold:vWA-like
Superfamily:vWA-like
Family:Ku80 subunit N-terminal domain
35d1n3ya_



not modelled 97.8 15
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
36d1ck4a_



not modelled 97.7 9
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
37c3jbrF_



not modelled 97.7 18
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent calcium channel subunit alpha-2/delta-1;
PDBTitle: cryo-em structure of the rabbit voltage-gated calcium channel cav1.12 complex at 4.2 angstrom
38c4cnbA_



not modelled 97.7 15
PDB header:structural protein
Chain: A: PDB Molecule:proximal thread matrix protein 1;
PDBTitle: structure of proximal thread matrix protein 1 (ptmp1) from the2 mussel byssus - crystal form 2
39c3txaA_



not modelled 97.7 18
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
40c3tw0D_



not modelled 97.6 21
PDB header:cell adhesion
Chain: D: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
41d1q0pa_



not modelled 97.6 13
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
42c5gjqW_



not modelled 97.6 8
PDB header:hydrolase
Chain: W: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
43c5gjvF_



not modelled 97.5 15
PDB header:membrane protein
Chain: F: PDB Molecule:voltage-dependent calcium channel subunit alpha-2/delta-1;
PDBTitle: structure of the mammalian voltage-gated calcium channel cav1.12 complex at near atomic resolution
44d1u0oc1



not modelled 97.5 12
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
45d1mf7a_



not modelled 97.4 10
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
46d1pd0a3



not modelled 97.4 18
Fold:vWA-like
Superfamily:vWA-like
Family:Trunk domain of Sec23/24
47d1ijba_



not modelled 97.4 14
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
48d1atza_



not modelled 97.4 8
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
49c4um9D_



not modelled 97.2 18
PDB header:immune system
Chain: D: PDB Molecule:integrin beta-6;
PDBTitle: crystal structure of alpha v beta 6 with peptide
50c5e6rA_



not modelled 97.2 15
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-l;
PDBTitle: structures of leukocyte integrin alb2: the ai domain, the headpiece,2 and the pocket for the internal ligand
51c6djpB_



not modelled 97.1 18
PDB header:membrane protein
Chain: B: PDB Molecule:integrin beta-8;
PDBTitle: integrin alpha-v beta-8 in complex with the fabs 8b8 and 68
52c3ragA_



not modelled 97.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
53d1mjna_



not modelled 97.0 16
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
54c1jeyB_



not modelled 97.0 10
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:ku80;
PDBTitle: crystal structure of the ku heterodimer bound to dna
55c3fcuB_



not modelled 96.9 17
PDB header:cell adhesion/blood clotting
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: structure of headpiece of integrin aiibb3 in open conformation
56c3v4pB_



not modelled 96.9 20
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-7;
PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1
57c3gxbB_



not modelled 96.9 9
PDB header:cell adhesion
Chain: B: PDB Molecule:von willebrand factor;
PDBTitle: crystal structure of vwf a2 domain
58c3vi3D_



not modelled 96.8 18
PDB header:cell adhesion/immune system
Chain: D: PDB Molecule:integrin beta-1;
PDBTitle: crystal structure of alpha5beta1 integrin headpiece (ligand-free form)
59c4ihkA_



not modelled 96.7 14
PDB header:cell adhesion
Chain: A: PDB Molecule:collagen alpha3(vi);
PDBTitle: crystal structure of the collagen vi alpha3 n5 domain r1061q
60d1tyeb2



not modelled 96.6 18
Fold:vWA-like
Superfamily:vWA-like
Family:Integrin A (or I) domain
61c1u8cB_



not modelled 92.3 15
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure
62c3ijeB_



not modelled 91.9 15
PDB header:protein binding
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: crystal structure of the complete integrin alhavbeta3 ectodomain plus2 an alpha/beta transmembrane fragment
63c3k6sB_



not modelled 91.4 17
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-2;
PDBTitle: structure of integrin alphaxbeta2 ectodomain
64c3sftA_



not modelled 54.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of thermotoga maritima cheb methylesterase catalytic2 domain
65c6a6iG_



not modelled 50.6 14
PDB header:hydrolase
Chain: G: PDB Molecule:excision repair cross-complementing rodent repair
PDBTitle: crystal structure of the winged-helix domain of cockayne syndrome2 group b protein in complex with ubiquitin
66d1jwya1



not modelled 48.3 26
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
67d1jsca3



not modelled 47.5 11
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
68c6akjB_



not modelled 45.8 10
PDB header:rna binding protein
Chain: B: PDB Molecule:enhancer of rudimentary homolog,yth domain-containing
PDBTitle: the crystal structure of emc complex
69c2qpuB_



not modelled 45.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
70d1jb3a_



not modelled 42.5 12
Fold:OB-fold
Superfamily:TIMP-like
Family:The laminin-binding domain of agrin
71c3b7qA_



not modelled 41.7 16
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein ykl091c;
PDBTitle: crystal structure of yeast sec14 homolog sfh1 in complex with2 phosphatidylcholine
72c2gdvA_



not modelled 40.7 15
PDB header:transferase
Chain: A: PDB Molecule:sucrose phosphorylase;
PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
73d1m2ka_



not modelled 40.6 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
74d1r7aa2



not modelled 38.4 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
75c2jsoA_



not modelled 35.9 25
PDB header:signaling protein
Chain: A: PDB Molecule:polymyxin resistance protein pmrd;
PDBTitle: antimicrobial resistance protein
76c6irtA_



not modelled 35.5 11
PDB header:membrane protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: human lat1-4f2hc complex bound with bch
77d1mkya3



not modelled 33.9 38
Fold:Alpha-lytic protease prodomain-like
Superfamily:Probable GTPase Der, C-terminal domain
Family:Probable GTPase Der, C-terminal domain
78c5d87A_



not modelled 33.8 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable siderophore biosynthesis protein sbna;
PDBTitle: staphyloferrin b precursor biosynthetic enzyme sbna y152f/s185g2 variant
79c5o1mA_



not modelled 31.8 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
80c1ydoC_



not modelled 30.8 19
PDB header:lyase
Chain: C: PDB Molecule:hmg-coa lyase;
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
81c2cw6B_



not modelled 30.6 14
PDB header:lyase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial;
PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
82c3egxB_



not modelled 30.2 16
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24a;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23a/24a2 complexed with the snare protein sec22b and bound to the transport3 signal sequence of the snare protein bet1
83c1ydnA_



not modelled 29.0 15
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
84d1hlva2



not modelled 28.7 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
85c3bleA_



not modelled 28.2 22
PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in complexed with2 malonate
86d1w6ta1



not modelled 28.0 11
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
87c3eg9B_



not modelled 27.7 20
PDB header:protein transport
Chain: B: PDB Molecule:sec24 related gene family, member d;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23/24 bound2 to the transport signal sequence of membrin
88c3e59A_



not modelled 26.5 21
PDB header:transferase
Chain: A: PDB Molecule:pyoverdine biosynthesis protein pvca;
PDBTitle: crystal structure of the pvca (pa2254) protein from pseudomonas2 aeruginosa
89c1oizA_



not modelled 26.4 20
PDB header:transport
Chain: A: PDB Molecule:alpha-tocopherol transfer protein;
PDBTitle: the molecular basis of vitamin e retention: structure of2 human alpha-tocopherol transfer protein
90c5y59B_



not modelled 26.0 19
PDB header:protein binding
Chain: B: PDB Molecule:atp-dependent dna helicase ii subunit 2;
PDBTitle: crystal structure of ku80 and sir4
91c4ov9A_



not modelled 26.0 5
PDB header:transferase
Chain: A: PDB Molecule:isopropylmalate synthase;
PDBTitle: structure of isopropylmalate synthase binding with alpha-2 isopropylmalate
92d1sr9a2



not modelled 25.6 7
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
93d1r5la2



not modelled 24.8 18
Fold:SpoIIaa-like
Superfamily:CRAL/TRIO domain
Family:CRAL/TRIO domain
94c1auaA_



not modelled 24.5 15
PDB header:phospholipid-binding protein
Chain: A: PDB Molecule:phosphatidylinositol transfer protein sec14p;
PDBTitle: phosphatidylinositol transfer protein sec14p from2 saccharomyces cerevisiae
95c3a9iA_



not modelled 23.8 27
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with lys
96c2n6yA_



not modelled 23.8 22
PDB header:ligase
Chain: A: PDB Molecule:hmwp2 nonribosomal peptide synthetase;
PDBTitle: solution structure of holo arcp from yersiniabactin synthetase
97c3g59A_



not modelled 23.5 13
PDB header:transferase
Chain: A: PDB Molecule:fmn adenylyltransferase;
PDBTitle: crystal structure of candida glabrata fmn adenylyltransferase in2 complex with atp
98c6n0wA_



not modelled 23.2 21
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of a tyrosine--trna ligase from elizabethkingia2 anophelis
99d1ni8a_



not modelled 23.1 29
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
100c2ygwB_



not modelled 23.0 14
PDB header:lyase
Chain: B: PDB Molecule:malonyl-coa decarboxylase, mitochondrial;
PDBTitle: crystal structure of human mcd
101d3bz7a1



not modelled 22.8 45
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
102d2ewca1



not modelled 22.3 15
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
103c4ksaD_



not modelled 21.7 14
PDB header:lyase
Chain: D: PDB Molecule:malonyl-coa decarboxylase;
PDBTitle: crystal structure of malonyl-coa decarboxylase from rhodopseudomonas2 palustris, northeast structural genomics consortium target rpr127
104c4ksaA_



not modelled 21.3 14
PDB header:lyase
Chain: A: PDB Molecule:malonyl-coa decarboxylase;
PDBTitle: crystal structure of malonyl-coa decarboxylase from rhodopseudomonas2 palustris, northeast structural genomics consortium target rpr127
105c4ksfA_



not modelled 21.0 16
PDB header:lyase
Chain: A: PDB Molecule:malonyl-coa decarboxylase;
PDBTitle: crystal structure of malonyl-coa decarboxylase from agrobacterium2 vitis, northeast structural genomics consortium target rir35
106c1m2vB_



not modelled 20.9 19
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the yeast sec23/24 heterodimer
107c5dn8A_



not modelled 20.8 29
PDB header:gtp-binding protein
Chain: A: PDB Molecule:gtpase der;
PDBTitle: 1.76 angstrom crystal structure of gtp-binding protein der from2 coxiella burnetii in complex with gdp.
108c5dxiB_



not modelled 20.5 12
PDB header:hydrolase
Chain: B: PDB Molecule:trehalose-6-phosphate phosphatase;
PDBTitle: structure of c. albicans trehalose-6-phosphate phosphatase c-terminal2 domain

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