Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2429_(ahpD)_2726816_2727349
DateWed Aug 7 12:50:05 BST 2019
Unique Job ID0c5dad0378cd2480
SequenceMSIEKLKAAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.081 Y:38.359 Z:49.580
Model (left) based on template d1knca_
Top template information
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
Confidence and coverage
Confidence:100.0% Coverage: 98%
174 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1knca_



100.0 100
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
2c4g9qA_



99.9 14
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
3d2q0ta1



99.8 18
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
4c3d7iB_



99.7 12
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
5c5dipB_



99.7 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
6c3beyC_



99.7 17
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
7d1vkeb_



99.6 22
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
8d1vkea_



99.6 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
9c1p8cD_



99.6 20
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
10d2ouwa1



99.6 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
11c2qeuA_



99.6 16
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
12d2cwqa1



99.6 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
13d2af7a1



99.6 13
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
14c3lvyB_



99.0 14
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
15c6ohiA_



99.0 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
16c3c1lB_



99.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
17d2pfxa1



99.0 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
18d2oyoa1



98.9 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
19d2prra1



98.9 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
20d2o4da1



98.9 24
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
21d2gmya1



not modelled 98.9 26
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
22c5dj4D_



not modelled 97.3 12
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
23c5gzxD_



not modelled 97.2 11
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
24c5aonB_



not modelled 63.6 26
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
25c5l87A_



not modelled 60.3 28
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
26c3ff5B_



not modelled 60.1 26
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
27c2w85A_



not modelled 49.4 24
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
28c1sg7A_



not modelled 29.2 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cation transport regulator chab;
PDBTitle: nmr solution structure of the putative cation transport2 regulator chab
29d1sg7a1



not modelled 29.2 26
Fold:ChaB-like
Superfamily:ChaB-like
Family:ChaB-like
30d2p7vb1



not modelled 22.5 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
31c2k9lA_



not modelled 16.8 11
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
32c2k9mA_



not modelled 14.9 11
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
33c2v79B_



not modelled 14.5 9
PDB header:dna binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from bacillus2 subtilis
34c1t3qD_



not modelled 14.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
35c4uetA_



not modelled 12.7 30
PDB header:retinol-binding protein
Chain: A: PDB Molecule:nematode fatty acid retinoid binding protein;
PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus
36c2ekkA_



not modelled 12.6 35
PDB header:protein binding
Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase
PDBTitle: solution structure of ruh-074, a human uba domain
37d1zxia1



not modelled 11.7 11
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
38c5tmxA_



not modelled 11.4 15
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
39d1t56a2



not modelled 11.3 25
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
40d1rm6c1



not modelled 10.7 20
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
41c5y6qA_



not modelled 10.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidase small subunit;
PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400
42c4zohC_



not modelled 10.5 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase iron-sulfur subunit;
PDBTitle: crystal structure of glyceraldehyde oxidoreductase
43c3t72o_



not modelled 10.4 14
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
44c3cmwA_



not modelled 10.2 22
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
45d1v97a1



not modelled 9.8 22
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
46c2xgvA_



not modelled 9.8 7
PDB header:viral protein
Chain: A: PDB Molecule:psiv capsid n-terminal domain;
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
47d1m9fd_



not modelled 9.2 12
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
48c2mqkA_



not modelled 8.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
49c2jnhA_



not modelled 8.6 28
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
50c2w9yA_



not modelled 8.1 14
PDB header:lipid transport
Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7,
PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans
51c2do6A_



not modelled 8.0 28
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
52c1ffuA_



not modelled 8.0 11
PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
53d1dxsa_



not modelled 7.8 18
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
54c2d9sA_



not modelled 7.8 28
PDB header:ligase
Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase;
PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
55c4wcxC_



not modelled 7.6 16
PDB header:lyase
Chain: C: PDB Molecule:biotin and thiamin synthesis associated;
PDBTitle: crystal structure of hydg: a maturase of the [fefe]-hydrogenase
56c1t3bA_



not modelled 6.8 33
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
57d1t33a2



not modelled 6.6 12
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
58c2q0oA_



not modelled 6.3 4
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
59d1dgja1



not modelled 6.3 14
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
60d1otva_



not modelled 6.3 15
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
61d1wdka1



not modelled 6.3 19
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HCDH C-domain-like
62c4om9A_



not modelled 6.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease pet;
PDBTitle: x-ray crystal structure of the passenger domain of plasmid encoded2 toxin, an autrotansporter enterotoxin from enteroaggregative3 escherichia coli (eaec)
63c4r33A_



not modelled 6.0 25
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
64d2csba4



not modelled 6.0 29
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
65d1vlba1



not modelled 5.9 14
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
66d3bula1



not modelled 5.8 17
Fold:Methionine synthase domain-like
Superfamily:Methionine synthase domain
Family:Methionine synthase domain
67c3itcA_



not modelled 5.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:renal dipeptidase;
PDBTitle: crystal structure of sco3058 with bound citrate and glycerol
68c4wt3A_



not modelled 5.5 19
PDB header:chaperone
Chain: A: PDB Molecule:rubisco accumulation factor 1, isoform 2;
PDBTitle: the n-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana
69c1rm6F_



not modelled 5.4 20
PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
70c5yisC_



not modelled 5.3 56
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/lc3b complex
71c3cixA_



not modelled 5.3 23
PDB header:adomet binding protein
Chain: A: PDB Molecule:fefe-hydrogenase maturase;
PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate
72d3orca_



not modelled 5.3 27
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
73c5ui5I_



not modelled 5.1 11
PDB header:transcription/dna
Chain: I: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: crystal structure of aquifex aeolicus sigman bound to promoter dna

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