Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2437_(-)_2734386_2734805
DateWed Aug 7 12:50:06 BST 2019
Unique Job IDb63b15de2c1a8a35
SequenceVLQRTNVVQP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.119 Y:30.054 Z:60.360
Model (left) based on template c5v7pA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:protein-s-isoprenylcysteine o-methyltransferase;
PDBTitle: atomic structure of the eukaryotic intramembrane ras methyltransferase2 icmt (isoprenylcysteine carboxyl methyltransferase), in complex with3 a monobody
Confidence and coverage
Confidence:100.0% Coverage: 90%
125 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5v7pA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:protein-s-isoprenylcysteine o-methyltransferase;
PDBTitle: atomic structure of the eukaryotic intramembrane ras methyltransferase2 icmt (isoprenylcysteine carboxyl methyltransferase), in complex with3 a monobody
2c4a2nB_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:isoprenylcysteine carboxyl methyltransferase;
PDBTitle: crystal structure of ma-icmt
3c4quvB_



100.0 20
PDB header:oxidoreductase, membrane protein
Chain: B: PDB Molecule:delta(14)-sterol reductase;
PDBTitle: structure of an integral membrane delta(14)-sterol reductase
4d1nu9c1



41.6 24
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Staphylocoagulase
Family:Staphylocoagulase
5c2jp3A_



37.1 20
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
6c4y9iA_



35.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
7c3r5yC_



24.1 23
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
8c5e8jC_



19.1 13
PDB header:translation
Chain: C: PDB Molecule:rnmt-activating mini protein;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase in complex2 with ram
9d2fug11



17.3 16
Fold:Bromodomain-like
Superfamily:Nqo1C-terminal domain-like
Family:Nqo1C-terminal domain-like
10c3r5wO_



16.0 27
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
11d1e7la1



14.3 25
Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
12c1p58E_



13.9 37
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
13c1p58F_



13.1 46
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
14c5ht7A_



11.2 27
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transition-metal-ion-binding betagamma-2 crystallin from methanosaeta thermophila
15c3h96B_



10.6 23
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
16c3r5zB_



10.3 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
17d1xyqa_



8.9 23
Fold:Prion-like
Superfamily:Prion-like
Family:Prion-like
18c4b03D_



8.2 29
PDB header:virus
Chain: D: PDB Molecule:dengue virus 1 prm protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
19c4ct7A_



7.0 31
PDB header:transcription
Chain: A: PDB Molecule:ccr4-not transcription complex subunit 1;
PDBTitle: cnot9-cnot1 complex with bound tryptophan
20c6em5v_



6.7 23
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l23-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
21d2e74g1



not modelled 6.6 25
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
22c1vf5G_



not modelled 6.3 21
PDB header:photosynthesis
Chain: G: PDB Molecule:protein pet g;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
23d1vf5g_



not modelled 6.3 21
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
24c5o60g_



not modelled 6.1 67
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
25c2m76A_



not modelled 5.3 24
PDB header:signaling protein
Chain: A: PDB Molecule:carnitine o-palmitoyltransferase 1, brain isoform;
PDBTitle: structure of the regulatory domain of human brain carnitine2 palmitoyltransferase 1
26d1rgoa2



not modelled 5.3 67
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below