Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2442c_(rplU)_2740057_2740371
DateWed Aug 7 12:50:06 BST 2019
Unique Job ID4b36e290b38ec75f
SequenceMMATYAIVKT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.557 Y:41.144 Z:58.475
Model (left) based on template c5o60S_
Top template information
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l21;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 96%
100 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60S_



100.0 88
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l21;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c5mmiS_



100.0 29
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l21, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
3c3j3vR_



100.0 40
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l21;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
4c5mlcT_



100.0 29
PDB header:ribosome
Chain: T: PDB Molecule:50s ribosomal protein l21, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
5d2qamr1



100.0 36
Fold:L21p-like
Superfamily:L21p-like
Family:Ribosomal protein L21p
6c4v19V_



100.0 27
PDB header:ribosome
Chain: V: PDB Molecule:mitoribosomal protein bl21m, mrpl21;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
7c1vw4N_



100.0 20
PDB header:ribosome
Chain: N: PDB Molecule:54s ribosomal protein l49, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
8c4ce4V_



100.0 27
PDB header:ribosome
Chain: V: PDB Molecule:mrpl21;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
9c3bboT_



100.0 30
PDB header:ribosome
Chain: T: PDB Molecule:ribosomal protein l21;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
10d2j01v1



100.0 46
Fold:L21p-like
Superfamily:L21p-like
Family:Ribosomal protein L21p
11d2zjro1



100.0 46
Fold:L21p-like
Superfamily:L21p-like
Family:Ribosomal protein L21p
12c5oo9A_



64.7 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative cupin_2 domain-containing isomerase;
PDBTitle: streptomyces pac13 (y55f) with uridine
13c2gu9B_



54.1 14
PDB header:immune system
Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein;
PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure
14c3ossC_



50.0 24
PDB header:protein transport
Chain: C: PDB Molecule:type 2 secretion system, gspc;
PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system
15c6nwoD_



48.2 29
PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator bgar;
PDBTitle: structures of the transcriptional regulator bgar, a lactose sensor.
16c3ibmB_



46.9 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila
17c5j4fB_



46.8 14
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminally his6-tagged hp0902, an2 uncharacterized protein from helicobacter pylori 26695
18c2ivwA_



46.7 24
PDB header:lipoprotein
Chain: A: PDB Molecule:pilp pilot protein;
PDBTitle: the solution structure of a domain from the neisseria meningitidis2 pilp pilot protein.
19d2arca_



45.8 24
Fold:Double-stranded beta-helix
Superfamily:Regulatory protein AraC
Family:Regulatory protein AraC
20c4h7lB_



44.4 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of plim_4148 protein from planctomyces limnophilus
21c2lc4A_



not modelled 43.4 23
PDB header:structural protein
Chain: A: PDB Molecule:pilp protein;
PDBTitle: solution structure of pilp from pseudomonas aeruginosa
22d1jala2



not modelled 40.9 39
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
23c5tg0A_



not modelled 40.9 33
PDB header:lyase
Chain: A: PDB Molecule:dimethylsulfoniopropionate lyase dddk;
PDBTitle: crystal structure of the dimethylsulfoniopropionate (dmsp) lyase dddk2 complexed with iron and zinc
24c3kgzA_



not modelled 40.2 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris
25c4av2P_



not modelled 39.2 24
PDB header:protein transport
Chain: P: PDB Molecule:pilp protein;
PDBTitle: single particle electron microscopy of pilq dodecameric complexes from2 neisseria meningitidis.
26c3d82A_



not modelled 38.7 9
PDB header:metal binding protein
Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution
27d1sq4a_



not modelled 37.5 19
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
28d1sfna_



not modelled 36.2 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
29c2vpvA_



not modelled 35.7 10
PDB header:cell cycle
Chain: A: PDB Molecule:protein mif2;
PDBTitle: dimerization domain of mif2p
30c1sefA_



not modelled 35.6 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis
31d1sefa_



not modelled 35.6 19
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
32d1y9qa2



not modelled 34.3 10
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Probable transcriptional regulator VC1968, C-terminal domain
33d1vj2a_



not modelled 34.2 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1459-like
34c5u9eB_



not modelled 33.5 14
PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional activator rhar;
PDBTitle: structure of the regulatory domain of the arac family transcriptional2 activator rhar
35d1rc6a_



not modelled 32.9 14
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
36c5uqpA_



not modelled 32.6 29
PDB header:unknown function
Chain: A: PDB Molecule:cupin;
PDBTitle: the crystal structure of cupin protein from rhodococcus jostii rha1
37c3cewA_



not modelled 32.5 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cupin protein;
PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205
38c4e2gE_



not modelled 32.5 10
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of cupin fold protein sthe2323 from sphaerobacter2 thermophilus
39c2lnvA_



not modelled 30.4 25
PDB header:transport protein
Chain: A: PDB Molecule:general secretion pathway protein c;
PDBTitle: solution structure of gspc-hr of typeii secretion system
40c3lwcA_



not modelled 28.8 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution
41c3l2hD_



not modelled 28.6 29
PDB header:isomerase
Chain: D: PDB Molecule:putative sugar phosphate isomerase;
PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution
42c2ozjB_



not modelled 27.2 19
PDB header:unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel;
PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution
43c3h7yA_



not modelled 27.1 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb;
PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form
44c3fjsC_



not modelled 26.0 19
PDB header:biosynthetic protein
Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold;
PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
45d1yhfa1



not modelled 25.2 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
46c5fq0A_



not modelled 25.2 19
PDB header:lyase
Chain: A: PDB Molecule:kdgf;
PDBTitle: the structure of kdgf from halomonas sp.
47c3jzvA_



not modelled 24.1 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rru_a2000;
PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain.
48c4rd7A_



not modelled 24.0 29
PDB header:unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: the crystal structure of a cupin 2 conserved barrel domain protein2 from salinispora arenicola cns-205
49c4axoA_



not modelled 23.1 14
PDB header:structural protein
Chain: A: PDB Molecule:ethanolamine utilization protein;
PDBTitle: structure of the clostridium difficile eutq protein
50c4e2sE_



not modelled 21.3 33
PDB header:hydrolase
Chain: E: PDB Molecule:ureidoglycine aminohydrolase;
PDBTitle: crystal structure of (s)-ureidoglycine aminohydrolase from arabidopsis2 thaliana in complex with its substrate, (s)-ureidoglycine
51c2pfwB_



not modelled 21.2 24
PDB header:unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution
52c5j7mB_



not modelled 21.0 24
PDB header:unknown function
Chain: B: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of cupin 2 conserved barrel domain protein from2 kribbella flavida dsm 17836
53d1o4ta_



not modelled 19.6 18
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
54c5ccbB_



not modelled 18.6 21
PDB header:transferase/rna
Chain: B: PDB Molecule:trna (adenine(58)-n(1))-methyltransferase non-catalytic
PDBTitle: crystal structure of human m1a58 methyltransferase in a complex with2 trna3lys and sah
55c2ejgD_



not modelled 18.3 12
PDB header:ligase
Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase
PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3
56c5zbfA_



not modelled 18.3 11
PDB header:isomerase
Chain: A: PDB Molecule:cupin domain protein;
PDBTitle: crystal structure of 4-hydroxyphenylpyruvic acid bound aere from2 microcystis aeruginosa
57d1v70a_



not modelled 18.0 19
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
58c3i7dB_



not modelled 17.7 10
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase;
PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution
59c4i4aA_



not modelled 16.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:similar to unknown protein;
PDBTitle: crystal structure of plu4264 protein from photorhabdus luminescens
60d2pyta1



not modelled 15.9 27
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
61d2f4pa1



not modelled 15.8 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
62c5k2lA_



not modelled 15.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, lysozyme;
PDBTitle: crystal structure of lysm domain from volvox carteri chitinase
63c6b8wB_



not modelled 15.4 11
PDB header:transcription
Chain: B: PDB Molecule:xre family transcriptional regulator;
PDBTitle: 1.9 angstrom resolution crystal structure of cupin_2 domain (pfam2 07883) of xre family transcriptional regulator from enterobacter3 cloacae.
64c4npgA_



not modelled 14.4 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of a hypothetical protein (bt1938) from bacteroides2 thetaiotaomicron vpi-5482 at 2.50 a resolution
65d1uwwa_



not modelled 14.2 13
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 28 carbohydrate binding module, CBM28
66c2go51_



not modelled 13.2 33
PDB header:translation/rna
Chain: 1: PDB Molecule:signal recognition particle receptor alpha
PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex
67d2fh5a1



not modelled 13.0 33
Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
68c2q30C_



not modelled 12.4 20
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution
69d1o5ua_



not modelled 12.0 41
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
70c5nlaA_



not modelled 11.2 5
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator transcription regulator
PDBTitle: crystal structure of the arac-like transcriptional activator cuxr
71c3rnsA_



not modelled 10.6 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis
72c2i45C_



not modelled 10.4 23
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis
73c5bxxA_



not modelled 10.3 8
PDB header:lyase
Chain: A: PDB Molecule:l-ectoine synthase;
PDBTitle: crystal structure of the ectoine synthase from the cold-adapted marine2 bacterium sphingopyxis alaskensis
74d1u0la1



not modelled 9.4 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
75c5onoA_



not modelled 9.2 22
PDB header:metal binding protein
Chain: A: PDB Molecule:l-ectoine synthase;
PDBTitle: crystal structure of ectoine synthase from p. lautus
76c4la3B_



not modelled 9.1 19
PDB header:lyase
Chain: B: PDB Molecule:dimethylsulphoniopropionate (dmsp) lyase dddq;
PDBTitle: crystal structure of dimethylsulphoniopropionate (dmsp) lyase dddq2 y131a in complex with dmsp
77c3i0mA_



not modelled 8.2 17
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair and telomere maintenance protein nbs1;
PDBTitle: structure of the s. pombe nbs1 fha/brct-repeat domain
78c2wkdA_



not modelled 7.9 19
PDB header:dna binding protein
Chain: A: PDB Molecule:orf34p2;
PDBTitle: crystal structure of a double ile-to-met mutant of protein orf34 from2 lactococcus phage p2
79c3m9bK_



not modelled 7.7 14
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
80d2b8ma1



not modelled 7.7 14
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:MJ0764-like
81c1d8lA_



not modelled 7.6 20
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
82c2o8qA_



not modelled 7.4 5
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution
83d1tifa_



not modelled 7.3 11
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Translation initiation factor IF3, N-terminal domain
Family:Translation initiation factor IF3, N-terminal domain
84d2fug33



not modelled 7.0 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
85c6ckaB_



not modelled 7.0 50
PDB header:viral protein
Chain: B: PDB Molecule:paratox;
PDBTitle: crystal structure of paratox
86c3myxA_



not modelled 7.0 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pspto_0244;
PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution
87c5nrkA_



not modelled 6.8 27
PDB header:protein binding
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: crystal structure of the sixth cohesin from acetivibrio2 cellulolyticus' scaffoldin b in complex with cel5 dockerin s15i, i16n3 mutant
88c3j81i_



not modelled 6.8 19
PDB header:ribosome
Chain: I: PDB Molecule:es8;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
89d1dgwa_



not modelled 6.8 38
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
90c2mkxA_



not modelled 6.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: solution structure of lysm the peptidoglycan binding domain of2 autolysin atla from enterococcus faecalis
91c5fpzA_



not modelled 6.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:pectin degradation protein;
PDBTitle: the structure of kdgf from yersinia enterocolitica with2 malonate bound in the active site.
92d1a7ha_



not modelled 6.7 16
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Crystallins/Ca-binding development proteins
93d1cuka3



not modelled 6.7 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA helicase RuvA subunit, N-terminal domain
94c3acgA_



not modelled 6.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-1,4-endoglucanase;
PDBTitle: crystal structure of carbohydrate-binding module family 28 from2 clostridium josui cel5a in complex with cellobiose
95c1hjpA_



not modelled 6.4 20
PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
96d1hr0w_



not modelled 6.4 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
97c2oqkA_



not modelled 6.2 31
PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
98d1jt8a_



not modelled 6.2 35
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
99d2cqaa1



not modelled 6.2 35
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain

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