Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2443_(dctA)_2740719_2742194
DateWed Aug 7 12:50:06 BST 2019
Unique Job ID0bdf5fa139b2c7a5
SequenceMTAPLDRAPV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.702 Y:54.801 Z:73.128
Model (left) based on template c6gctA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
Confidence and coverage
Confidence:100.0% Coverage: 82%
402 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6gctA_



100.0 25
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
2c4ky0B_



100.0 30
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
3d2nwwa1



100.0 31
Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
4c5lm4A_



100.0 26
PDB header:transport protein
Chain: A: PDB Molecule:excitatory amino acid transporter 1,neutral amino acid
PDBTitle: structure of the thermostalilized eaat1 cryst-ii mutant in complex2 with l-asp and the allosteric inhibitor ucph101
5c4k0eA_



83.6 20
PDB header:transport protein
Chain: A: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
6c6owsB_



63.2 14
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
7c4mt1A_



63.2 8
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
8c5lq3F_



59.1 11
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb
9c4czbB_



57.8 13
PDB header:membrane protein
Chain: B: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: structure of the sodium proton antiporter mjnhap1 from2 methanocaldococcus jannaschii at ph 8.
10c4r0cB_



53.9 18
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
11c5a1sB_



53.4 10
PDB header:transport protein
Chain: B: PDB Molecule:citrate-sodium symporter;
PDBTitle: crystal structure of the sodium-dependent citrate symporter secits2 form salmonella enterica.
12c4n7wA_



50.8 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
13d1iwga8



48.5 15
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
14c1oy8A_



47.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
15c2yvxD_



47.3 11
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
16c2v50A_



43.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
17c4k0eC_



30.2 23
PDB header:transport protein
Chain: C: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
18c6dmoA_



29.2 17
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
19c5mg3D_



24.5 11
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
20c5i6xA_



17.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
21c3k07A_



not modelled 17.0 20
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
22d1a77a1



not modelled 16.1 18
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
23c3ah5E_



not modelled 14.6 12
PDB header:transferase
Chain: E: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump
24c5xnmT_



not modelled 13.8 20
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
25d1iwga7



not modelled 13.7 11
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
26c5mdxT_



not modelled 13.3 20
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
27c5mdxt_



not modelled 13.3 20
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
28c3jcuT_



not modelled 13.1 20
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
29c3jcut_



not modelled 13.1 20
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
30d2pxrc1



not modelled 12.2 12
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
31d1o26a_



not modelled 11.8 16
Fold:Thymidylate synthase-complementing protein Thy1
Superfamily:Thymidylate synthase-complementing protein Thy1
Family:Thymidylate synthase-complementing protein Thy1
32c4i7zE_



not modelled 11.7 39
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
33c4pv1E_



not modelled 11.7 39
PDB header:electron transport/inhibitor
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
34d1m9dc_



not modelled 11.6 14
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
35c4p5aB_



not modelled 11.6 16
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of a ump/dump methylase polb from streptomyces2 cacaoi bound with 5-br ump
36c5x3xq_



not modelled 11.4 12
PDB header:transport protein
Chain: Q: PDB Molecule:uncharacterized protein cbiq;
PDBTitle: 2.8a resolution structure of a cobalt energy-coupling factor2 transporter-cbimqo
37d1m9fd_



not modelled 10.4 12
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
38c4h0lE_



not modelled 10.1 39
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: cytochrome b6f complex crystal structure from mastigocladus laminosus2 with n-side inhibitor nqno
39d2e74e1



not modelled 10.1 39
Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex
40c4h13E_



not modelled 10.1 39
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from mastigocladus2 laminosus with tds
41c2e76E_



not modelled 10.1 39
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
42c1vf5E_



not modelled 10.1 39
PDB header:photosynthesis
Chain: E: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
43c2e75E_



not modelled 10.1 39
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
44c2e74E_



not modelled 10.1 39
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
45c1vf5R_



not modelled 10.1 39
PDB header:photosynthesis
Chain: R: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
46c2wlvA_



not modelled 9.8 16
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: structure of the n-terminal capsid domain of hiv-2
47c4r1iB_



not modelled 9.6 14
PDB header:membrane protein
Chain: B: PDB Molecule:aminobenzoyl-glutamate transporter;
PDBTitle: structure and function of neisseria gonorrhoeae mtrf illuminates a2 class of antimetabolite efflux pumps
48c3aqpB_



not modelled 9.2 10
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
49c4fc4H_



not modelled 9.1 12
PDB header:transport protein
Chain: H: PDB Molecule:nitrite transporter nirc;
PDBTitle: fnt family ion channel
50c5gufA_



not modelled 9.0 22
PDB header:transferase
Chain: A: PDB Molecule:cdp-archaeol synthase;
PDBTitle: structural insight into an intramembrane enzyme for archaeal membrane2 lipids biosynthesis
51d1mc8a1



not modelled 8.0 20
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
52c3dl8C_



not modelled 7.8 19
PDB header:protein transport
Chain: C: PDB Molecule:sece;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
53c3dl8D_



not modelled 7.8 19
PDB header:protein transport
Chain: D: PDB Molecule:sece;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and bacillus2 subtilis seca
54d2jeka1



not modelled 7.8 42
Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
55c1l6nA_



not modelled 7.3 12
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein
56c4uoiB_



not modelled 7.3 25
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: unexpected structure for the n-terminal domain of hepatitis c virus2 envelope glycoprotein e1
57c5e06A_



not modelled 6.8 12
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: structure of sin nombre virus nucleoprotein in long-axis crystal form
58d1rxwa1



not modelled 6.6 18
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
59c5xamA_



not modelled 6.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
60d1ul1x1



not modelled 6.0 18
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
61d2yvxa3



not modelled 5.8 11
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
62d1b43a1



not modelled 5.1 20
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
63c4k1cA_



not modelled 5.1 13
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below