Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2450c_(rpfE)_2751672_2752190
DateWed Aug 7 12:50:07 BST 2019
Unique Job ID420d965ba43873e3
SequenceLKNARTTLIA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.975 Y:29.599 Z:30.365
Model (left) based on template c4ow1A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
Confidence and coverage
Confidence:100.0% Coverage: 44%
75 residues ( 44% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 67% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ow1A_
100.0 65
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
2c5e27B_
100.0 58
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
3c1xsfA_
100.0 53
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
4d1xsfa1
100.0 64
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
5c3eo5A_
100.0 58
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
6d1yroa1
97.8 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
7d1fkqa_
97.6 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
8d1hfxa_
97.6 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
9c2z2fA_
97.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme
10c2fbdB_
97.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
11d1iiza_
97.5 18
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
12d1b9oa_
97.5 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
13d1f6sa_
97.5 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
14d1alca_
97.5 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
15d1gd6a_
97.4 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
16d1jsea_
97.3 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
17c2goiC_
97.2 19
PDB header:cell adhesion, sugar binding protein
Chain: C: PDB Molecule:sperm lysozyme-like protein 1;
PDBTitle: crystal structure of mouse sperm c-type lysozyme-like protein 1
18d1hhla_
97.2 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
19d1lsga1
97.1 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
20d1juga_
97.1 31
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
21d2vb1a1
not modelled 97.1 30
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
22c3w6dB_
not modelled 97.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
23d1qqya_
not modelled 97.0 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
24d1ghla_
not modelled 97.0 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
25d2nwdx1
not modelled 97.0 35
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
26d1ivma_
not modelled 96.9 36
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
27d2eqla_
not modelled 96.9 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
28d1lmqa_
not modelled 96.9 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
29c3bkhA_
not modelled 96.8 27
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
30d1qsaa2
not modelled 96.7 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
31d1gbsa_
not modelled 96.5 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
32c4oz9A_
not modelled 96.4 22
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
33c2y8pA_
not modelled 96.3 32
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
34c4cfoB_
not modelled 95.9 20
PDB header:hydrolase
Chain: B: PDB Molecule:mltc;
PDBTitle: structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
35c3gxkB_
not modelled 95.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
36c3mgwA_
not modelled 95.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
37c4xp8A_
not modelled 95.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
38c6cfcA_
not modelled 93.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of soluble lytic transglycosylase cj0843 of2 campylobacter jejuni in complex with bulgecin a
39c1slyA_
not modelled 92.9 28
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
40c6fcqA_
not modelled 92.3 27
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic murein transglycosylase;
PDBTitle: the x-ray structure of lytic transglycosylase slt inactive mutant2 e503q from pseudomonas aeruginosa in complex with bulgecin a
41c4anrA_
not modelled 90.1 23
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
42d1qusa_
not modelled 88.5 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
43c5anzA_
not modelled 87.8 26
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
44c3ct5A_
not modelled 79.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
45d1am7a_
not modelled 78.2 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Lambda lysozyme
46d1eh9a2
not modelled 74.1 28
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
47c4nooA_
not modelled 44.0 50
PDB header:immune system
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: molecular mechanism for self-protection against type vi secretion2 system in vibrio cholerae
48c3csqC_
not modelled 43.6 17
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
49c1fuiB_
not modelled 29.7 33
PDB header:isomerase
Chain: B: PDB Molecule:l-fucose isomerase;
PDBTitle: l-fucose isomerase from escherichia coli
50c4fdyA_
not modelled 29.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
51d1y2ta_
not modelled 27.4 50
Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Fungal fruit body lectin
52c4dq5B_
not modelled 25.1 32
PDB header:membrane protein
Chain: B: PDB Molecule:membrane protein phi6 p5wt;
PDBTitle: structural investigation of bacteriophage phi6 lysin (wt)
53c2kukA_
not modelled 24.1 60
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
54c2dqaA_
not modelled 22.5 29
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of tapes japonica lysozyme
55c2ofeA_
not modelled 18.9 33
PDB header:sugar binding protein
Chain: A: PDB Molecule:sclerotium rolfsii lectin;
PDBTitle: the crystal structure of sclerotium rolfsii lectin in complex with n-2 acetyl-d-glucosamine
56d1ay7b_
not modelled 15.4 35
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
57d1x99a_
not modelled 13.3 50
Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Fungal fruit body lectin
58d1fuia1
not modelled 13.0 33
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:FucI/AraA C-terminal domain-like
Family:L-fucose isomerase, C-terminal domain
59c5j9hA_
not modelled 12.4 20
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: crystal structure of glycoprotein c from puumala virus in the post-2 fusion conformation (ph 8.0)
60d1yaro1
not modelled 12.0 35
Fold:Four-helical up-and-down bundle
Superfamily:Proteasome activator
Family:Proteasome activator
61c2lurA_
not modelled 11.0 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
62c5bq9B_
not modelled 11.0 55
PDB header:unknown function, structural genomics
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg1496 legionella2 pneumophila subsp. pneumophila
63c2jwmA_
not modelled 10.6 63
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle
64c3e4hA_
not modelled 10.4 75
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
65c3a9rA_
not modelled 10.0 44
PDB header:isomerase
Chain: A: PDB Molecule:d-arabinose isomerase;
PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
66c4by6F_
not modelled 10.0 20
PDB header:transcription
Chain: F: PDB Molecule:general negative regulator of transcription subunit 5;
PDBTitle: yeast not1-not2-not5 complex
67d1ddla_
not modelled 10.0 64
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tymoviridae-like VP
68c5e7tI_
not modelled 9.8 48
PDB header:viral protein
Chain: I: PDB Molecule:major structural protein 1;
PDBTitle: structure of the tripod (bppuct-a-l) from the baseplate of2 bacteriophage tuc2009
69d1kula_
not modelled 9.7 20
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
70c2wnwB_
not modelled 9.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:activated by transcription factor ssrb;
PDBTitle: the crystal structure of srfj from salmonella typhimurium
71c1n1uA_
not modelled 9.2 75
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
72d1n1ua_
not modelled 9.2 75
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
73d2cx6a1
not modelled 9.2 6
Fold:Barstar-like
Superfamily:Barstar-related
Family:Barstar-related
74c4oltA_
not modelled 8.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:chitosanase;
PDBTitle: chitosanase complex structure
75c2miiA_
not modelled 8.6 21
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
76c5xc2D_
not modelled 8.5 28
PDB header:hydrolase
Chain: D: PDB Molecule:endo-beta-1,3-glucanase;
PDBTitle: crystal structure of gh family 81 beta-1,3-glucanase from rhizomucr2 miehei complexed with laminarihexaose
77d1pt4a_
not modelled 8.4 63
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
78c1nb1A_
not modelled 8.3 75
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
79d1nb1a_
not modelled 8.3 75
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
80c2m4lA_
not modelled 8.2 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein bt_0846;
PDBTitle: nmr structure of the protein bt_0846 from bacteroides thetaiotaomicron2 vpi-5482 (np_809759.1)
81c2wq4B_
not modelled 7.4 26
PDB header:sugar binding protein
Chain: B: PDB Molecule:lectin;
PDBTitle: n-terminal domain of bc2l-c lectin from burkholderia cenocepacia
82c3l0iA_
not modelled 7.4 43
PDB header:protein binding/protein transport
Chain: A: PDB Molecule:drra;
PDBTitle: complex structure of sidm/drra with the wild type rab1
83c3vdlB_
not modelled 7.3 17
PDB header:cell invasion
Chain: B: PDB Molecule:circumsporozoite (cs) protein;
PDBTitle: crystal structure of circumsporozoite protein atsr domain, p43212 form
84c2f2iA_
not modelled 7.1 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
85c1zxxA_
not modelled 6.8 19
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
86c5eznA_
not modelled 6.8 33
PDB header:immune system
Chain: A: PDB Molecule:cysteine-rich protective antigen;
PDBTitle: crystal structure of pfcyrpa
87d1xrsb1
not modelled 6.7 10
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
88d1quba1
not modelled 6.6 23
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
89c3jb9g_
not modelled 6.6 42
PDB header:rna binding protein/rna
Chain: G: PDB Molecule:small nuclear ribonucleoprotein sm d2;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
90d1e57a_
not modelled 6.6 50
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tymoviridae-like VP
91c1hznA_
not modelled 6.5 38
PDB header:hormone/growth factor
Chain: A: PDB Molecule:cholecystokinin type a receptor;
PDBTitle: nmr solution structure of the third extracellular loop of2 the cholecystokinin a receptor
92c2mn1A_
not modelled 6.4 63
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
93c1k48A_
not modelled 6.4 83
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
94c1jjzA_
not modelled 6.4 83
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
95c3noyA_
not modelled 6.4 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
96c3t8tA_
not modelled 6.3 24
PDB header:unknown function
Chain: A: PDB Molecule:staphylococcus aureus cymr (oxidized form);
PDBTitle: crystal structure of staphylococcus aureus cymr oxidized form
97d1auyb_
not modelled 6.3 55
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tymoviridae-like VP
98d1auya_
not modelled 6.2 55
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tymoviridae-like VP
99c4ttnA_
not modelled 6.2 83
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1

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