Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2464c_(-)_2766869_2767675
DateWed Aug 7 12:50:09 BST 2019
Unique Job ID033dc5b2a79f0f06
SequenceVPEGHTLHRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.683 Y:57.667 Z:53.444
Model (left) based on template c2f5qA_
Top template information
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
Confidence and coverage
Confidence:100.0% Coverage: 97%
260 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2f5qA_
100.0 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
2c1k82D_
100.0 26
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
3c1nnjA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
4c1ee8A_
100.0 28
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
5c2opfA_
100.0 25
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
6c3twkB_
100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg
7c3a46B_
100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of mvnei1/thf complex
8c3w0fA_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
9c4mb7A_
100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like l720;
PDBTitle: crystal structure of a viral dna glycosylase
10c1tdhA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:nei endonuclease viii-like 1;
PDBTitle: crystal structure of human endonuclease viii-like 1 (neil1)
11c5ituB_
100.0 22
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:endonuclease 8-like 1;
PDBTitle: crystal structure of human neil1(242k) bound to duplex dna containing2 thf
12d1r2za1
100.0 34
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
13d1k82a1
100.0 27
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
14d1ee8a1
100.0 35
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
15d1tdza1
100.0 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
16d1k3xa1
100.0 24
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
17d1k82a2
99.9 19
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
18d1ee8a2
99.9 21
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
19d1r2za2
99.9 17
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
20d1tdza2
99.9 19
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
21d1k3xa2
not modelled 99.9 20
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
22d1tdha1
not modelled 99.8 27
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
23d1tdha2
not modelled 99.8 18
Fold:N-terminal domain of MutM-like DNA repair proteins
Superfamily:N-terminal domain of MutM-like DNA repair proteins
Family:N-terminal domain of MutM-like DNA repair proteins
24d2hkja1
not modelled 99.7 12
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Topoisomerase VI-B subunit middle domain
25d1ee8a3
not modelled 99.6 34
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
26d1r2za3
not modelled 99.5 38
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
27d1tdza3
not modelled 99.5 36
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
28d1k82a3
not modelled 99.5 44
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
29d1l1ta3
not modelled 99.5 41
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
30d1k3xa3
not modelled 99.5 46
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
31c3doaA_
not modelled 97.4 12
PDB header:protein binding
Chain: A: PDB Molecule:fibrinogen binding protein;
PDBTitle: the crystal structure of the fibrinogen binding protein from2 staphylococcus aureus
32d2uubm1
not modelled 97.0 19
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
33c3iz6M_
not modelled 96.8 22
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
34c2zkqm_
not modelled 96.7 27
PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
35d2gy9m1
not modelled 96.7 18
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
36c5o5jM_
not modelled 96.7 17
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
37c2xznM_
not modelled 96.7 18
PDB header:ribosome
Chain: M: PDB Molecule:rps18e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
38d1i94m_
not modelled 96.6 20
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
39c3j20O_
not modelled 96.5 14
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
40c5xyiS_
not modelled 96.4 24
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s13p/s18e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
41c3zeyM_
not modelled 96.0 14
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
42c5mmjm_
not modelled 95.6 14
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
43c1mx0D_
not modelled 94.9 14
PDB header:isomerase
Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b;
PDBTitle: structure of topoisomerase subunit
44c5h3xA_
not modelled 94.6 13
PDB header:cell adhesion
Chain: A: PDB Molecule:fibronectin/fibrinogen binding protein;
PDBTitle: the structure of the n-terminal of the fibronectin/fibrinogen-binding2 protein from streptococcus suis (fbps)
45c6ifsB_
not modelled 93.8 21
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: ksga from bacillus subtilis 168
46c4gc5A_
not modelled 93.3 12
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase 1, mitochondrial;
PDBTitle: crystal structure of murine tfb1m
47d2i0za2
not modelled 93.3 18
Fold:HI0933 insert domain-like
Superfamily:HI0933 insert domain-like
Family:HI0933 insert domain-like
48c4itqA_
not modelled 93.1 25
PDB header:gene regulation, structural protein/dna
Chain: A: PDB Molecule:putative uncharacterized protein sco1480;
PDBTitle: crystal structure of hypothetical protein sco1480 bound to dna
49c6erpJ_
not modelled 91.8 5
PDB header:transcription
Chain: J: PDB Molecule:dimethyladenosine transferase 2, mitochondrial;
PDBTitle: structure of the human mitochondrial transcription initiation complex2 at the lsp promoter
50c3fuxB_
not modelled 90.1 17
PDB header:transferase
Chain: B: PDB Molecule:dimethyladenosine transferase;
PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121
51c2gb5B_
not modelled 89.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
52c3fteA_
not modelled 88.9 16
PDB header:transferase/rna
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of a. aeolicus ksga in complex with rna
53d1qyra_
not modelled 88.7 24
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
54d2gqfa2
not modelled 85.9 8
Fold:HI0933 insert domain-like
Superfamily:HI0933 insert domain-like
Family:HI0933 insert domain-like
55c2m6nA_
not modelled 85.1 21
PDB header:cell cycle
Chain: A: PDB Molecule:f-box only protein 5;
PDBTitle: 3d solution structure of emi1 (early mitotic inhibitor 1)
56c4rulA_
not modelled 84.4 26
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
57c3uzuA_
not modelled 84.4 15
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
58c3bbnM_
not modelled 84.3 17
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
59c4jxjA_
not modelled 83.3 15
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: crystal structure of ribosomal rna small subunit methyltransferase a2 from rickettsia bellii determined by iodide sad phasing
60d2fiya1
not modelled 83.1 23
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
61d2f4ma1
not modelled 82.3 22
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
62c4ui9S_
not modelled 80.6 14
PDB header:cell cycle
Chain: S: PDB Molecule:f-box only protein 5;
PDBTitle: atomic structure of the human anaphase-promoting complex
63c1yuzB_
not modelled 79.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
64c6o3pA_
not modelled 74.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
65c3u50C_
not modelled 74.0 24
PDB header:dna binding protein
Chain: C: PDB Molecule:telomerase-associated protein 82;
PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-c
66c3tqsB_
not modelled 73.7 16
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: structure of the dimethyladenosine transferase (ksga) from coxiella2 burnetii
67c2h1rA_
not modelled 73.6 11
PDB header:transferase
Chain: A: PDB Molecule:dimethyladenosine transferase, putative;
PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum
68d2jnea1
not modelled 72.2 17
Fold:Rubredoxin-like
Superfamily:YfgJ-like
Family:YfgJ-like
69c2jneA_
not modelled 72.2 17
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein yfgj;
PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound. northeast2 structural genomics consortium target er317.
70c5fywW_
not modelled 72.0 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
71c1dvbA_
not modelled 71.1 20
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
72c2jrpA_
not modelled 70.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
73c6i52C_
not modelled 70.5 21
PDB header:dna binding protein
Chain: C: PDB Molecule:replication factor a protein 1;
PDBTitle: yeast rpa bound to ssdna
74c2lcqA_
not modelled 69.0 20
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
75c4gopC_
not modelled 66.4 32
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
76c4kblA_
not modelled 66.2 18
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism
77c5fmfR_
not modelled 64.9 23
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
78c2zbkB_
not modelled 64.3 15
PDB header:isomerase
Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b;
PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms
79c5oqmW_
not modelled 62.9 23
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
80c5ijlA_
not modelled 61.9 41
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
81c1dgsB_
not modelled 61.3 39
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
82c5oqjW_
not modelled 61.2 31
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
83d1l1oc_
not modelled 59.2 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
84d1qf8a_
not modelled 59.1 28
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
85c5d5hA_
not modelled 58.4 13
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of mycobacterium tuberculosis topoisomerase i
86d1pfta_
not modelled 57.6 17
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
87c6hmsB_
not modelled 57.4 41
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
88c2owoA_
not modelled 57.3 38
PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
89d1odha_
not modelled 56.7 17
Fold:GCM domain
Superfamily:GCM domain
Family:GCM domain
90d1x3za1
not modelled 56.4 20
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
91c6gymW_
not modelled 56.0 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
92d2k4xa1
not modelled 55.7 29
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
93c2kpiA_
not modelled 55.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
94c5ah5B_
not modelled 54.8 38
PDB header:ligase/rna
Chain: B: PDB Molecule:leucine--trna ligase;
PDBTitle: crystal structure of the ternary complex of agrobacterium2 radiobacter k84 agnb2 leurs-trna-leuams
95d2akla2
not modelled 54.6 30
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
96c5edvB_
not modelled 54.3 26
PDB header:ligase/transferase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rnf31;
PDBTitle: structure of the hoip-rbr/ubch5b~ubiquitin transfer complex
97c2mvwA_
not modelled 53.8 35
PDB header:metal binding protein
Chain: A: PDB Molecule:protein pml;
PDBTitle: solution structure of the trim19 b-box1 (b1) of human promyelocytic2 leukemia (pml)
98c3eg9B_
not modelled 53.3 23
PDB header:protein transport
Chain: B: PDB Molecule:sec24 related gene family, member d;
PDBTitle: crystal structure of the mammalian copii-coat protein sec23/24 bound2 to the transport signal sequence of membrin
99c4k95G_
not modelled 53.1 31
PDB header:ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: crystal structure of parkin
100c5f4tA_
not modelled 52.6 33
PDB header:cell adhesion
Chain: A: PDB Molecule:izumo sperm-egg fusion protein 1;
PDBTitle: crystal structure of the human sperm izumo1 residues 22-254
101c2hr5B_
not modelled 52.4 25
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
102c4u3eA_
not modelled 51.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
103c5iy9Q_
not modelled 51.8 31
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
104c2m9yA_
not modelled 51.7 27
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: solution structure of the catalytic domain of hhari
105c2js4A_
not modelled 51.7 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
106c1pd0A_
not modelled 51.6 23
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)
107c3wwnB_
not modelled 51.3 27
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
108c1wz2B_
not modelled 49.8 31
PDB header:ligase/rna
Chain: B: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of leucyl-trna synthetase and trna(leucine)2 complex
109c2m48A_
not modelled 49.5 23
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: solution structure of ibr-ring2 tandem domain from parkin
110d1twfi2
not modelled 49.4 24
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
111d2avue1
not modelled 49.4 32
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
112c2xzn9_
not modelled 49.2 29
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
113c2jr6A_
not modelled 48.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
114c1m2vB_
not modelled 48.6 23
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the yeast sec23/24 heterodimer
115c5b5kA_
not modelled 48.0 33
PDB header:cell adhesion
Chain: A: PDB Molecule:izumo sperm-egg fusion protein 1;
PDBTitle: crystal structure of izumo1, the mammalian sperm ligand for egg juno
116d1jwhc_
not modelled 47.7 28
Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
117c6f5zC_
not modelled 47.2 8
PDB header:transferase
Chain: C: PDB Molecule:upf0434 family protein;
PDBTitle: complex between the haloferax volcanii trm112 methyltransferase2 activator and the hvo_0019 putative methyltransferase
118c2riqA_
not modelled 46.9 24
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the third zinc-binding domain of human parp-1
119d1ctla1
not modelled 46.8 25
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
120d1ibia1
not modelled 46.7 40
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite