Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2472_(-)_2775282_2775575
DateWed Aug 7 12:50:10 BST 2019
Unique Job IDbda4a3a1cd30a04d
SequenceMMMRIAVRLP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.492 Y:18.711 Z:33.524
Model (left) based on template d2bj7a1
Top template information
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
Confidence and coverage
Confidence: 26.1% Coverage: 29%
28 residues ( 29% of your sequence) have been modelled with 26.1% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bj7a1



26.1 18
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
2c2ca9B_



17.3 21
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
3c5l6mA_



16.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
4d1r53a_



15.3 42
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
5c6nklD_



13.4 35
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
6d1v8ca2



13.2 46
Fold:TBP-like
Superfamily:MoaD-related protein, C-terminal domain
Family:MoaD-related protein, C-terminal domain
7c4lj2A_



12.7 29
PDB header:lyase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from acinetobacter baumannii2 at 3.15a resolution
8c5l6lD_



12.7 36
PDB header:hydrolase
Chain: D: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 bound to operator dna
9c3tndF_



12.2 24
PDB header:translation, toxin
Chain: F: PDB Molecule:antitoxin vapb;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
10c1q5vB_



10.8 21
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
11c2bj3D_



10.3 18
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
12c3zvkG_



8.8 44
PDB header:antitoxin/toxin/dna
Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
13c3ms6A_



8.5 47
PDB header:protein binding
Chain: A: PDB Molecule:hepatitis b virus x-interacting protein;
PDBTitle: crystal structure of hepatitis b x-interacting protein (hbxip)
14d1sq1a_



8.1 26
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
15d1p9qc3



8.0 50
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
16d1rdua_



7.7 36
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
17c2wfbA_



6.8 83
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein orp;
PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas
18c5z2fA_



6.1 57
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: nadph/pda bound dihydrodipicolinate reductase from paenisporosarcina2 sp. tg-14
19d4ubpb_



5.8 36
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
20d1ejxb_



5.7 30
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit

Binding site prediction 

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