Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2473_(-)_2775578_2776294
DateWed Aug 7 12:50:10 BST 2019
Unique Job ID5cc38457c5649852
SequenceVAPTSSSVAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.481 Y:13.173 Z:17.596
Model (left) based on template c1jmtB_
Top template information
PDB header:rna binding protein
Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer
Confidence and coverage
Confidence: 48.4% Coverage: 4%
9 residues ( 4% of your sequence) have been modelled with 48.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1jmtB_



48.4 67
PDB header:rna binding protein
Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer
2c6hwhX_



27.8 17
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
3c4ng2E_



26.5 35
PDB header:transcription regulator
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of lasr lbd-qsla complex from pseudomonas aeruginosa
4c2y69Q_



18.9 20
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
5c6hu9e_



18.1 17
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
6d1v54d_



16.4 20
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
7c4dlpB_



14.0 36
PDB header:ligase
Chain: B: PDB Molecule:aminoacyl-trna synthetase, class i:aminoacyl-trna
PDBTitle: crystal structure of methionyl-trna synthetase metrs from brucella2 melitensis bound to selenomethionine
8c1w8xP_



13.6 23
PDB header:virus
Chain: P: PDB Molecule:protein p16;
PDBTitle: structural analysis of prd1
9d2fiqa1



11.4 32
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:GatZ-like
10c1zzaA_



9.8 32
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
11c4e6nB_



8.5 20
PDB header:protein binding
Chain: B: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
12c4ardA_



8.4 70
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: structure of the immature retroviral capsid at 8a resolution by cryo-2 electron microscopy
13d1mp9a1



8.2 24
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
14c6c48E_



7.9 38
PDB header:cell cycle/dna binding
Chain: E: PDB Molecule:protein lin-52 homolog;
PDBTitle: crystal structure of b-myb-lin9-lin52 complex
15d1aisa1



7.4 29
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
16c2jmvA_



7.2 55
PDB header:antiviral protein
Chain: A: PDB Molecule:scytovirin;
PDBTitle: solution structure of scytovirin refined against residual2 dipolar couplings
17c2ky8A_



6.6 38
PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
18c5v8kA_



6.6 36
PDB header:photosynthesis
Chain: A: PDB Molecule:p800 reaction center core protein;
PDBTitle: homodimeric reaction center of h. modesticaldum
19c6humI_



6.3 24
PDB header:proton transport
Chain: I: PDB Molecule:nad(p)h-quinone oxidoreductase subunit i;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
20c3ajbB_



6.3 100
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: crystal structure of human pex3p in complex with n-terminal pex19p2 peptide
21c1gytG_



not modelled 5.9 23
PDB header:hydrolase
Chain: G: PDB Molecule:cytosol aminopeptidase;
PDBTitle: e. coli aminopeptidase a (pepa)
22c6h1bA_



not modelled 5.9 41
PDB header:ligase
Chain: A: PDB Molecule:fatty acid coa ligase;
PDBTitle: structure of amide bond synthetase mcba k483a mutant from2 marinactinospora thermotolerans
23d2d6ya2



not modelled 5.4 9
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
24c4gr5B_



not modelled 5.4 34
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
25c5x3xq_



not modelled 5.2 29
PDB header:transport protein
Chain: Q: PDB Molecule:uncharacterized protein cbiq;
PDBTitle: 2.8a resolution structure of a cobalt energy-coupling factor2 transporter-cbimqo
26c3iymA_



not modelled 5.1 44
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: backbone trace of the capsid protein dimer of a fungal partitivirus2 from electron cryomicroscopy and homology modeling

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below