Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2478c_(-)_2784133_2784618
DateWed Aug 7 12:50:10 BST 2019
Unique Job IDb968ce558b510be5
SequenceVVGHIVNDLQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:81.453 Y:54.299 Z:41.692
Model (left) based on template d1qvca_
Top template information
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
Confidence and coverage
Confidence:100.0% Coverage: 83%
134 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1qvca_
100.0 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
2c1qvcA_
100.0 19
PDB header:dna binding protein
Chain: A: PDB Molecule:single stranded dna binding protein monomer;
PDBTitle: crystal structure analysis of single stranded dna binding protein2 (ssb) from e.coli
3c4damA_
99.9 29
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein 1;
PDBTitle: crystal structure of small single-stranded dna-binding protein from2 streptomyces coelicolor
4d1ue1a_
99.9 31
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
5c2iheA_
99.9 19
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of wild-type single-stranded dna binding protein2 from thermus aquaticus
6c2vw9B_
99.9 20
PDB header:dna-binding protein
Chain: B: PDB Molecule:single-stranded dna binding protein;
PDBTitle: single stranded dna binding protein complex from2 helicobacter pylori
7c2ihfA_
99.9 19
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus
8c3tqyA_
99.9 21
PDB header:transferase
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: structure of a single-stranded dna-binding protein (ssb), from2 coxiella burnetii
9c3ulpC_
99.9 17
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:single-strand binding protein;
PDBTitle: plasmodium falciparum ssb complex with ssdna
10d1eyga_
99.9 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
11c3pgzB_
99.9 19
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of a single strand binding protein (ssb) from2 bartonella henselae
12c3eivB_
99.9 40
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein 2;
PDBTitle: crystal structure of single-stranded dna-binding protein2 from streptomyces coelicolor
13c5xgtA_
99.9 27
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of the n-terminal domain of staphylococcus aureus2 single-stranded dna-binding protein ssba at 1.82 angstrom resolution
14c5gqoB_
99.9 68
PDB header:dna binding protein
Chain: B: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: structure of the second single stranded dna binding protein (ssbb)2 from mycobacterium smegmatis
15c1eqqD_
99.9 22
PDB header:replication/rna
Chain: D: PDB Molecule:single stranded dna binding protein;
PDBTitle: single stranded dna binding protein and ssdna complex
16c1ue7A_
99.9 32
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of the single-stranded dna-binding2 protein from mycobacterium tuberculosis
17c3vdyA_
99.9 23
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded dna-binding protein ssbb;
PDBTitle: b. subtilis ssbb/ssdna
18d1se8a_
99.9 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
19c1se8A_
99.9 22
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: structure of single-stranded dna-binding protein (ssb) from d.2 radiodurans
20c2cwaA_
99.9 25
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of the single-stranded dna binding protein from2 thermus thermophilus hb8
21c5odnG_
not modelled 99.9 30
PDB header:dna binding protein
Chain: G: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: salinibacter ruber single-strand binding protein
22d3ulla_
not modelled 99.9 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
23d1v1qa_
not modelled 99.8 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
24c1z9fA_
not modelled 99.8 29
PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution
25c3lgjA_
not modelled 99.8 19
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of single-stranded binding protein (ssb) from2 bartonella henselae
26c3kojA_
not modelled 99.8 22
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ycf41;
PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein from2 synechococcus sp. northeast structural genomics consortium target3 snr59a.
27c6cqoH_
not modelled 99.7 20
PDB header:dna binding protein
Chain: H: PDB Molecule:single-stranded dna-binding protein rim1, mitochondrial;
PDBTitle: crystal structure of mitochondrial single-stranded dna binding2 proteins from s. cerevisiae (semet labeled), rim1 (form2)
28c3k8aA_
not modelled 99.7 15
PDB header:dna binding protein
Chain: A: PDB Molecule:putative primosomal replication protein;
PDBTitle: neisseria gonorrhoeae prib
29d1txya_
not modelled 99.7 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
30c3fhwB_
not modelled 99.7 11
PDB header:dna binding protein
Chain: B: PDB Molecule:primosomal replication protein n;
PDBTitle: crystal structure of the protein prib from bordetella parapertussis.2 northeast structural genomics consortium target bpr162.
31c3en2A_
not modelled 99.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable primosomal replication protein n;
PDBTitle: three-dimensional structure of the protein prib from ralstonia2 solanacearum at the resolution 2.3a. northeast structural genomics3 consortium target rsr213c.
32c4dniA_
not modelled 97.7 22
PDB header:protein binding, rna binding protein
Chain: A: PDB Molecule:fusion protein of rna-editing complex proteins mp42 and
PDBTitle: structure of editosome protein
33c3stbC_
not modelled 96.9 17
PDB header:rna binding protein/immune system
Chain: C: PDB Molecule:rna-editing complex protein mp42;
PDBTitle: a complex of two editosome proteins and two nanobodies
34c3k81D_
not modelled 96.4 20
PDB header:immune system, rna binding protein
Chain: D: PDB Molecule:mp18 rna editing complex protein;
PDBTitle: structure of the central interaction protein from the trypanosoma2 brucei editosome in complex with single domain antibodies
35c3e0eA_
not modelled 93.8 18
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
36c2hqlB_
not modelled 89.3 16
PDB header:dna binding protein
Chain: B: PDB Molecule:hypothetical protein mg376 homolog;
PDBTitle: crystal structure of a small single-stranded dna binding2 protein from mycoplasma pneumoniae
37c2vl6C_
not modelled 79.8 20
PDB header:dna binding protein
Chain: C: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain
38c5fkvA_
not modelled 78.9 26
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit alpha;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
39c4pogC_
not modelled 76.3 22
PDB header:replication, dna binding protein/dna
Chain: C: PDB Molecule:cell division control protein 21;
PDBTitle: mcm-ssdna co-crystal structure
40d1gm5a2
not modelled 76.2 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecG "wedge" domain
41c4hspA_
not modelled 71.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf3299 family protein (pa4066) from2 pseudomonas aeruginosa pao1 at 2.45 a resolution
42c1ynxA_
not modelled 71.5 11
PDB header:dna binding protein
Chain: A: PDB Molecule:replication factor-a protein 1;
PDBTitle: solution structure of dna binding domain a (dbd-a) of2 s.cerevisiae replication protein a (rpa)
43c4dk6D_
not modelled 69.5 22
PDB header:rna binding protein/immune system
Chain: D: PDB Molecule:rna-editing complex protein mp81;
PDBTitle: structure of editosome protein
44c2k50A_
not modelled 67.6 6
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:replication factor a related protein;
PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a.
45c4gs3A_
not modelled 66.3 18
PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: dimeric structure of the n-terminal domain of prib protein from2 thermoanaerobacter tencongensis solved ab initio
46c4ywkA_
not modelled 63.4 15
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 21;
PDBTitle: pyrococcus furiosus mcm n-terminal domain with zinc-binding subdomain2 b deleted
47c4owxB_
not modelled 61.5 19
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:soss complex subunit b1;
PDBTitle: structural basis of soss1 in complex with a 12nt ssdna
48c1fguA_
not modelled 59.8 6
PDB header:replication
Chain: A: PDB Molecule:replication protein a 70 kda dna-binding subunit;
PDBTitle: ssdna-binding domain of the large subunit of replication2 protein a
49d1o7ia_
not modelled 59.6 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
50c4me3A_
not modelled 53.8 25
PDB header:replication
Chain: A: PDB Molecule:dna replication licensing factor mcm related protein;
PDBTitle: 1.8 angstrom crystal structure of the n-terminal domain of an archaeal2 mcm
51d1jmca1
not modelled 52.1 9
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
52d1vqoj1
not modelled 50.7 35
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
53c4gn5A_
not modelled 50.3 21
PDB header:de novo protein/hydrolase
Chain: A: PDB Molecule:obody am3l15;
PDBTitle: obody am3l15 bound to hen egg-white lysozyme
54c1vw4H_
not modelled 50.3 33
PDB header:ribosome
Chain: H: PDB Molecule:54s ribosomal protein l23, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
55d1c0aa1
not modelled 50.2 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
56c5groA_
not modelled 48.1 8
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna(asp/asn) ligase;
PDBTitle: crystal structure of the n-terminal anticodon-binding domain of non-2 discriminating aspartyl-trna synthetase from helicobacter pylori
57d1jmca2
not modelled 47.2 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
58c3dm3A_
not modelled 46.7 28
PDB header:replication
Chain: A: PDB Molecule:replication factor a;
PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e
59c4wfaG_
not modelled 45.9 50
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l13;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
60c5o60K_
not modelled 45.7 45
PDB header:ribosome
Chain: K: PDB Molecule:50s ribosomal protein l13;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
61d1l0wa1
not modelled 45.4 8
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
62c1ltlE_
not modelled 44.9 25
PDB header:replication
Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54);
PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum
63c4gopC_
not modelled 44.6 7
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna
64c3j3bO_
not modelled 44.5 40
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a;
PDBTitle: structure of the human 60s ribosomal proteins
65c4a1aI_
not modelled 44.3 40
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l13a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
66d1j3aa_
not modelled 43.9 40
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
67c3cf5G_
not modelled 43.6 40
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:50s ribosomal protein l13;
PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans
68d2zjrg1
not modelled 43.6 40
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
69d1ltla_
not modelled 43.2 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA replication initiator (cdc21/cdc54) N-terminal domain
70c3j3wJ_
not modelled 43.0 53
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l13;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
71c3d5bN_
not modelled 42.6 47
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l13;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
72c2zkrj_
not modelled 42.4 40
PDB header:ribosomal protein/rna
Chain: J: PDB Molecule:rna expansion segment es15 part ii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
73c3izcK_
not modelled 42.4 40
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
74c6hv93_
not modelled 39.8 21
PDB header:dna binding protein
Chain: 3: PDB Molecule:dna replication licensing factor mcm3;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
75d2j01n1
not modelled 39.7 47
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
76c5bmqA_
not modelled 38.5 27
PDB header:hydrolase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of l,d-transpeptidase (yku) from stackebrandtia2 nassauensis
77c3jywM_
not modelled 38.2 40
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l16(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
78c3j39O_
not modelled 37.7 45
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
79c3f2cA_
not modelled 37.6 18
PDB header:transferase/dna
Chain: A: PDB Molecule:geobacillus kaustophilus dna polc;
PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn
80c5mlcL_
not modelled 37.0 45
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l13, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
81c4hikA_
not modelled 34.0 15
PDB header:dna binding protein
Chain: A: PDB Molecule:protection of telomeres protein 1;
PDBTitle: crystal structure of schizosaccharomyces pombe pot1pc bound to ssdna2 (ggttacggt)
82c3iz5K_
not modelled 33.7 45
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l13a (l13p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
83c5mvrA_
not modelled 33.1 14
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
84c3zf7O_
not modelled 31.6 35
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
85c3jc72_
not modelled 31.2 20
PDB header:hydrolase
Chain: 2: PDB Molecule:dna replication licensing factor mcm2;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
86c2ftcH_
not modelled 30.8 32
PDB header:ribosome
Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
87d1bbua1
not modelled 30.0 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
88c4v19N_
not modelled 29.2 30
PDB header:ribosome
Chain: N: PDB Molecule:mitoribosomal protein ul13m, mrpl13;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
89d1b8aa1
not modelled 27.8 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
90c3bboL_
not modelled 26.1 42
PDB header:ribosome
Chain: L: PDB Molecule:ribosomal protein l13;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
91d1fnda1
not modelled 24.8 21
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
92c2k75A_
not modelled 24.7 20
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ta0387;
PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b.
93c3f9vA_
not modelled 22.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase
94c4xvoB_
not modelled 22.1 20
PDB header:transferase
Chain: B: PDB Molecule:l,d-transpeptidase;
PDBTitle: l,d-transpeptidase from mycobacterium smegmatis
95c2xgtB_
not modelled 21.4 17
PDB header:ligase
Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic;
PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate
96c6fpeE_
not modelled 21.4 32
PDB header:rna binding protein
Chain: E: PDB Molecule:atpase yjee, predicted to have essential role in cell wall
PDBTitle: bacterial protein complex
97c3jc57_
not modelled 21.1 23
PDB header:hydrolase
Chain: 7: PDB Molecule:dna replication licensing factor mcm7;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
98c1gm5A_
not modelled 21.0 16
PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
99c4glaD_
not modelled 20.8 23
PDB header:hydrolase/de novo protein
Chain: D: PDB Molecule:obody nl8;
PDBTitle: obody nl8 bound to hen egg-white lysozyme

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