Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2482c_(plsB2)_2786924_2789293
DateWed Aug 7 12:50:11 BST 2019
Unique Job ID211154b3546d639e
SequenceVTKPAADASA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.050 Y:57.876 Z:46.118
Model (left) based on template c5kymA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
Confidence and coverage
Confidence: 99.7% Coverage: 25%
195 residues ( 25% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
253 residues ( 32%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5kymA_
99.7 14
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
2c5f34A_
97.3 16
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannoside acyltransferase;
PDBTitle: crystal structure of membrane associated pata from mycobacterium2 smegmatis in complex with s-hexadecyl coenzyme a - p21 space group
3d1iuqa_
96.5 15
Fold:Glycerol-3-phosphate (1)-acyltransferase
Superfamily:Glycerol-3-phosphate (1)-acyltransferase
Family:Glycerol-3-phosphate (1)-acyltransferase
4c3no4A_
84.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:creatinine amidohydrolase;
PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution
5c5knkB_
59.4 11
PDB header:transferase
Chain: B: PDB Molecule:lipid a biosynthesis lauroyl acyltransferase;
PDBTitle: lipid a secondary acyltransferase lpxm from acinetobacter baumannii2 with catalytic residue substitution (e127a)
6d1t3la2
48.7 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
7d1vyva2
45.2 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
8d1vyua2
44.4 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
9c4oydB_
43.1 23
PDB header:viral protein/inhibitor
Chain: B: PDB Molecule:computationally designed inhibitor;
PDBTitle: crystal structure of a computationally designed inhibitor of an2 epstein-barr viral bcl-2 protein
10d1t0hb_
38.2 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
11c4yyfC_
36.0 17
PDB header:hydrolase
Chain: C: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
12d1sr8a_
33.8 11
Fold:CbiD-like
Superfamily:CbiD-like
Family:CbiD-like
13c3cfyA_
33.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo repressor2 protein from vibrio parahaemolyticus
14c2h09A_
33.4 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
15d1wj5a_
33.3 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:An Obfc1 domain
16c1sfeA_
32.8 33
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
17c3wo8B_
32.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:beta-n-acetylglucosaminidase;
PDBTitle: crystal structure of the beta-n-acetylglucosaminidase from thermotoga2 maritima
18c4zyeA_
32.3 33
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase
19c1g3wA_
31.4 16
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
20c4g6cA_
31.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase 1;
PDBTitle: crystal structure of beta-hexosaminidase 1 from burkholderia2 cenocepacia j2315
21c1t39A_
not modelled 29.3 33
PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
22c4bhcA_
not modelled 28.4 33
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
23c1wrjA_
not modelled 28.2 28
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii
24c1f5tA_
not modelled 27.7 16
PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
25c2it0A_
not modelled 26.8 16
PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
26d2c6ya1
not modelled 26.5 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
27c3tevA_
not modelled 26.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hyrolase, family 3;
PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1
28d1sfea1
not modelled 25.8 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
29d1mvoa_
not modelled 25.1 10
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
30c5m5iC_
not modelled 24.1 17
PDB header:motor protein
Chain: C: PDB Molecule:kinesin-like protein cut7;
PDBTitle: pseudo-atomic model of microtubule-bound s.pombe kinesin-5 motor2 domain in the amppnp state (based on cryo-electron microscopy3 experiment): the n-terminus conformation allows formation of a cover4 neck bundle.
31c2jk1A_
not modelled 24.1 12
PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
32c2ev5B_
not modelled 23.6 14
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
33c3v32B_
not modelled 23.2 22
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c5x2dA_
not modelled 23.0 18
PDB header:cell adhesion
Chain: A: PDB Molecule:tegumental protein 20.8 kda;
PDBTitle: crystal structure of dlc like domain of cstal3 (83-177aa)
35c3go5A_
not modelled 22.9 16
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
36c5g1mA_
not modelled 22.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of nagz from pseudomonas aeruginosa
37c3g73A_
not modelled 22.4 13
PDB header:transcription/dna
Chain: A: PDB Molecule:forkhead box protein m1;
PDBTitle: structure of the foxm1 dna binding
38c5z2hA_
not modelled 22.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:dictyostelium discoideum mitochondrial calcium uniporter;
PDBTitle: structure of dictyostelium discoideum mitochondrial calcium uniporter2 n-terminal domain(ddmcu-ntd)
39c5fkzE_
not modelled 21.4 13
PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, constitutive;
PDBTitle: structure of e.coli constitutive lysine decarboxylase
40d1qnta1
not modelled 21.0 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
41c3hqdB_
not modelled 20.8 17
PDB header:motor protein
Chain: B: PDB Molecule:kinesin-like protein kif11;
PDBTitle: human kinesin eg5 motor domain in complex with amppnp and2 mg2+
42c3i71B_
not modelled 20.8 17
PDB header:unknown function
Chain: B: PDB Molecule:ethanolamine utilization protein eutk;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain
43d1kcfa2
not modelled 20.3 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
44d1tr9a_
not modelled 20.3 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
45d2a07f1
not modelled 19.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
46c3kfwX_
not modelled 19.4 18
PDB header:structural genomics, unknown function
Chain: X: PDB Molecule:uncharacterized protein;
PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis
47d1d5va_
not modelled 19.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
48d1d7ka2
not modelled 19.0 10
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
49d2cqna1
not modelled 18.4 18
Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
50c6ncmA_
not modelled 18.4 10
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:forkhead box protein n3;
PDBTitle: crystal structure of the human foxn3 dna binding domain in complex2 with a forkhead-like (fhl) dna sequence
51c2ctuA_
not modelled 18.3 60
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 483;
PDBTitle: solution structure of zinc finger domain from human zn2 finger protein 483
52c2pffB_
not modelled 18.2 17
PDB header:transferase
Chain: B: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structural insights of yeast fatty acid synthase
53c2pffH_
not modelled 18.2 17
PDB header:transferase
Chain: H: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structural insights of yeast fatty acid synthase
54c2pffE_
not modelled 18.2 17
PDB header:transferase
Chain: E: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structural insights of yeast fatty acid synthase
55c2m4eA_
not modelled 17.8 22
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution nmr structure of vv2_0175 from vibrio vulnificus, nesg target2 vnr1 and csgid target idp91333
56c5xcoB_
not modelled 17.5 20
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:ace-arg-arg-arg-arg-cys-pro-leu-tyr-ile-ser-tyr-asp-pro-
PDBTitle: crystal structure of human k-ras g12d mutant in complex with gdp and2 cyclic inhibitory peptide
57d1kgsa2
not modelled 17.4 11
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
58c3u6xU_
not modelled 16.6 33
PDB header:viral protein
Chain: U: PDB Molecule:orf48;
PDBTitle: phage tp901-1 baseplate tripod
59d1whna_
not modelled 16.4 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
60d2dpwa1
not modelled 16.3 19
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:TTHA0179-like
61d2hfha_
not modelled 15.8 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
62c2fyuE_
not modelled 14.2 27
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
63d2doea1
not modelled 13.8 26
Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
64c2qzjC_
not modelled 13.7 10
PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
65d1vm6a3
not modelled 13.6 23
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
66c2g7hA_
not modelled 13.5 33
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: structure of an o6-methylguanine dna methyltransferase from2 methanococcus jannaschii (mj1529)
67d1xhfa1
not modelled 13.5 6
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
68c3kcnA_
not modelled 13.4 11
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
69c1mgtA_
not modelled 13.3 16
PDB header:transferase
Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase);
PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1
70c2kiqA_
not modelled 13.3 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription elongation regulator 1;
PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150
71c1p84E_
not modelled 13.0 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
72d3bpya1
not modelled 12.6 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
73c1e17A_
not modelled 12.5 18
PDB header:dna binding domain
Chain: A: PDB Molecule:afx;
PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4)
74c2mbfA_
not modelled 12.5 12
PDB header:transcription
Chain: A: PDB Molecule:fork head domain containing protein;
PDBTitle: solution structure of the forkhead domain of brugia malayi daf-16a
75c2l25A_
not modelled 12.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: np_888769.1
76c1kq8A_
not modelled 12.3 23
PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1;
PDBTitle: solution structure of winged helix protein hfh-1
77d1kq8a_
not modelled 12.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
78c4e7pA_
not modelled 12.3 10
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of receiver domain of putative narl family response2 regulator spr1814 from streptococcus pneumoniae in the presence of3 the phosphoryl analog beryllofluoride
79c6b3yA_
not modelled 12.2 6
PDB header:transport protein
Chain: A: PDB Molecule:denn domain-containing protein 3;
PDBTitle: crystal structure of the ph-like domain from dennd3
80d1hw1a1
not modelled 12.0 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
81c6o58H_
not modelled 11.7 44
PDB header:transport protein
Chain: H: PDB Molecule:essential mcu regulator, mitochondrial;
PDBTitle: human mcu-emre complex, dimer of channel
82c6o58P_
not modelled 11.7 44
PDB header:transport protein
Chain: P: PDB Molecule:essential mcu regulator, mitochondrial;
PDBTitle: human mcu-emre complex, dimer of channel
83c5ocnG_
not modelled 11.5 11
PDB header:transcription
Chain: G: PDB Molecule:forkhead box protein n1;
PDBTitle: crystal structure of the forkhead domain of human foxn1
84c3co7C_
not modelled 11.4 15
PDB header:transcription/dna
Chain: C: PDB Molecule:forkhead box protein o1;
PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna
85c2kimA_
not modelled 11.3 28
PDB header:transferase
Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase;
PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-methylguanine2 dna methyltransferase family protein from vibrio parahaemolyticus.3 northeast structural genomics consortium target vpr247.
86c2e71A_
not modelled 11.3 20
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation regulator 1;
PDBTitle: solution structure of the second ff domain of human2 transcription factor ca150
87c2fynO_
not modelled 11.1 19
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
88d1wdea_
not modelled 10.9 9
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
89c3pg8B_
not modelled 10.9 14
PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
90d1ys7a2
not modelled 10.8 18
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
91d1tdja2
not modelled 10.8 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Allosteric threonine deaminase C-terminal domain
92c2rjnA_
not modelled 10.7 9
PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
93c3lk6A_
not modelled 10.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis
94c4gvgB_
not modelled 10.7 9
PDB header:hydrolase
Chain: B: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of salmonella typhimurium family 3 glycoside2 hydrolase (nagz)
95c2vycA_
not modelled 10.6 11
PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
96d1a04a2
not modelled 10.6 11
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
97c5ewnA_
not modelled 10.6 20
PDB header:viral protein
Chain: A: PDB Molecule:structural protein;
PDBTitle: crystal structure of the human astrovirus 1 capsid protein core domain2 at 2.6 a resolution
98d1q42a_
not modelled 10.6 28
Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
99c3ic7A_
not modelled 10.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below