Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2488c_(-)_2797477_2800890
DateWed Aug 7 12:50:11 BST 2019
Unique Job ID1823635e53a8bf4c
SequenceMDRRPRDFEQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:72.563 Y:75.275 Z:97.163
Model (left) based on template c6mfvC_
Top template information
PDB header:signaling protein
Chain: C: PDB Molecule:tetratricopeptide repeat sensor ph0952;
PDBTitle: crystal structure of the signal transduction atpase with numerous2 domains (stand) protein with a tetratricopeptide repeat sensor ph09523 from pyrococcus horikoshii
Confidence and coverage
Confidence:100.0% Coverage: 54%
618 residues ( 54% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
892 residues ( 78%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6mfvC_
100.0 15
PDB header:signaling protein
Chain: C: PDB Molecule:tetratricopeptide repeat sensor ph0952;
PDBTitle: crystal structure of the signal transduction atpase with numerous2 domains (stand) protein with a tetratricopeptide repeat sensor ph09523 from pyrococcus horikoshii
2d1fx2a_
100.0 31
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
3c6fhtB_
100.0 24
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
4c1y10C_
100.0 19
PDB header:lyase
Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state
5d1fx4a_
100.0 32
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
6c4yusA_
99.9 15
PDB header:lyase
Chain: A: PDB Molecule:family 3 adenylate cyclase;
PDBTitle: crystal structure of photoactivated adenylyl cyclase of a2 cyanobacteriaoscillatoria acuminata in hexagonal form
7c4wp3E_
99.9 30
PDB header:lyase
Chain: E: PDB Molecule:ma1120;
PDBTitle: crystal structure of adenylyl cyclase from mycobacterium avium ma11202 wild type
8c4cllA_
99.9 18
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase type 10;
PDBTitle: crystal structure of human soluble adenylyl cyclase in complex with2 bicarbonate
9c3iytG_
99.9 18
PDB header:apoptosis
Chain: G: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: structure of an apoptosome-procaspase-9 card complex
10c5nbyA_
99.9 17
PDB header:lyase
Chain: A: PDB Molecule:beta subunit of photoactivated adenylyl cyclase;
PDBTitle: structure of a bacterial light-regulated adenylyl cylcase
11c3mr7B_
99.9 26
PDB header:hydrolase
Chain: B: PDB Molecule:adenylate/guanylate cyclase/hydrolase, alpha/beta fold
PDBTitle: crystal structure of adenylate/guanylate cyclase/hydrolase from2 silicibacter pomeroyi
12c1z6tC_
99.9 20
PDB header:apoptosis
Chain: C: PDB Molecule:apoptotic protease activating factor 1;
PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp
13c5juyB_
99.9 19
PDB header:apoptosis
Chain: B: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: active human apoptosome with procaspase-9
14c1ybuA_
99.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:lipj;
PDBTitle: mycobacterium tuberculosis adenylyl cyclase rv1900c chd, in complex2 with a substrate analog.
15c6r4pA_
99.9 19
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a soluble domain of adenylyl cyclase bound to an2 activated stimulatory g protein
16c1wc6B_
99.9 23
PDB header:lyase
Chain: B: PDB Molecule:adenylate cyclase;
PDBTitle: soluble adenylyl cyclase cyac from s. platensis in complex2 with rp-atpalphas in presence of bicarbonate
17c5o5kC_
99.9 22
PDB header:membrane protein
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: x-ray structure of a bacterial adenylyl cyclase soluble domain
18c3et6A_
99.9 24
PDB header:lyase
Chain: A: PDB Molecule:soluble guanylyl cyclase beta;
PDBTitle: the crystal structure of the catalytic domain of a eukaryotic2 guanylate cyclase
19d1wc1a_
99.9 23
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
20c2w01C_
99.9 27
PDB header:lyase
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of the guanylyl cyclase cya2
21c6r4oA_
not modelled 99.9 19
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a truncated adenylyl cyclase bound to mant-gtp, forskolin2 and an activated stimulatory galphas protein
22c1cjkA_
not modelled 99.9 16
PDB header:lyase/lyase/signaling protein
Chain: A: PDB Molecule:adenylate cyclase, type v;
PDBTitle: complex of gs-alpha with the catalytic domains of mammalian adenylyl2 cyclase: complex with adenosine 5'-(alpha thio)-triphosphate (rp),3 mg, and mn
23c3uvjC_
not modelled 99.9 23
PDB header:lyase
Chain: C: PDB Molecule:guanylate cyclase soluble subunit alpha-3;
PDBTitle: crystal structure of the catalytic domain of the heterodimeric human2 soluble guanylate cyclase 1.
24c3r5gB_
not modelled 99.9 22
PDB header:lyase
Chain: B: PDB Molecule:cyab;
PDBTitle: crystal structure of the adenylyl cyclase cyab from p. aeruginosa
25c2a5yB_
not modelled 99.9 16
PDB header:apoptosis
Chain: B: PDB Molecule:ced-4;
PDBTitle: structure of a ced-4/ced-9 complex
26c2wz1B_
not modelled 99.9 21
PDB header:lyase
Chain: B: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: structure of the catalytic domain of human soluble guanylate cyclase 12 beta 3.
27d1azsa_
not modelled 99.9 17
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
28c1yk9A_
not modelled 99.9 25
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of a mutant form of the mycobacterial2 adenylyl cyclase rv1625c
29d1azsb_
not modelled 99.8 16
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
30c3iz8D_
not modelled 99.8 20
PDB header:apoptosis
Chain: D: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
31c3iz8G_
not modelled 99.8 20
PDB header:apoptosis
Chain: G: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
32c1vt4N_
not modelled 99.8 20
PDB header:apoptosis
Chain: N: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
33c3iz8F_
not modelled 99.8 20
PDB header:apoptosis
Chain: F: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
34c3iz8A_
not modelled 99.8 20
PDB header:apoptosis
Chain: A: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
35c1vt4P_
not modelled 99.8 20
PDB header:apoptosis
Chain: P: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
36c1vt4J_
not modelled 99.8 20
PDB header:apoptosis
Chain: J: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
37c1vt4M_
not modelled 99.8 20
PDB header:apoptosis
Chain: M: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
38c1vt4K_
not modelled 99.8 20
PDB header:apoptosis
Chain: K: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
39c3iz8C_
not modelled 99.8 20
PDB header:apoptosis
Chain: C: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
40c1vt4L_
not modelled 99.8 20
PDB header:apoptosis
Chain: L: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
41c3iz8H_
not modelled 99.8 20
PDB header:apoptosis
Chain: H: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
42c3iz8E_
not modelled 99.8 20
PDB header:apoptosis
Chain: E: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
43c3iz8B_
not modelled 99.8 20
PDB header:apoptosis
Chain: B: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
44c1vt4I_
not modelled 99.8 20
PDB header:apoptosis
Chain: I: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
45c1vt4O_
not modelled 99.8 20
PDB header:apoptosis
Chain: O: PDB Molecule:apaf-1 related killer dark;
PDBTitle: structure of the drosophila apoptosome
46c2qenA_
not modelled 99.8 16
PDB header:unknown function
Chain: A: PDB Molecule:walker-type atpase;
PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi
47c6aoaA_
not modelled 99.8 19
PDB header:lyase
Chain: A: PDB Molecule:bacterio-rhodopsin/guanylyl cyclase 1 fusion protein;
PDBTitle: monomeric crystal structure of the e497/c566d double mutant of the2 guanylyl cyclase domain of the rhogc fusion protein from the aquatic3 fungus blastocladiella emersonii
48c4lfuA_
not modelled 99.8 25
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
49c2fnaA_
not modelled 99.8 14
PDB header:atp-binding protein
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus2 solfataricus p2 at 2.00 a resolution
50c2q0oA_
not modelled 99.8 26
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
51c3sztB_
not modelled 99.8 28
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
52c1h0mD_
not modelled 99.7 19
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein trar bound2 to its autoinducer and to its target dna
53c3qp5C_
not modelled 99.7 27
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
54c2qbyB_
not modelled 99.7 13
PDB header:replication/dna
Chain: B: PDB Molecule:cell division control protein 6 homolog 3;
PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
55c1zljE_
not modelled 99.6 33
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
56c4if4A_
not modelled 99.6 29
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
57c3c3wB_
not modelled 99.6 33
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
58c5f64C_
not modelled 99.6 28
PDB header:transcription regulator
Chain: C: PDB Molecule:positive transcription regulator evga;
PDBTitle: putative positive transcription regulator (sensor evgs) from shigella2 flexneri
59c5hevC_
not modelled 99.6 34
PDB header:transcription
Chain: C: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the beryllofluoride-activated liar from2 enterococcus faecium
60d1p4wa_
not modelled 99.6 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
61c4yn8A_
not modelled 99.6 35
PDB header:dna binding protein
Chain: A: PDB Molecule:response regulator chra;
PDBTitle: crystal structure of response regulator chra in heme-sensing two2 component system
62c1fnnB_
not modelled 99.6 19
PDB header:cell cycle
Chain: B: PDB Molecule:cell division control protein 6;
PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
63c6j5tC_
not modelled 99.6 17
PDB header:plant protein
Chain: C: PDB Molecule:disease resistance rpp13-like protein 4;
PDBTitle: reconstitution and structure of a plant nlr resistosome conferring2 immunity
64c6jqsA_
not modelled 99.6 35
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: structure of transcription factor, gere
65c4hyeB_
not modelled 99.6 30
PDB header:transcription activator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator spr1814 from streptococcus2 pneumoniae reveals unique interdomain contacts among narl family3 proteins
66c5o8yG_
not modelled 99.6 28
PDB header:transcription
Chain: G: PDB Molecule:transcriptional regulatory protein rcsb;
PDBTitle: conformational dynamism for dna interaction in salmonella typhimurium2 rcsb response regulator.
67c3cloC_
not modelled 99.6 30
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
68c2krfB_
not modelled 99.6 29
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
69c3klnC_
not modelled 99.6 35
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
70c1rnlA_
not modelled 99.6 37
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
71c2qbyA_
not modelled 99.6 15
PDB header:replication/dna
Chain: A: PDB Molecule:cell division control protein 6 homolog 1;
PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
72d1l3la1
not modelled 99.6 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
73d1a04a1
not modelled 99.6 34
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
74d1fsea_
not modelled 99.6 39
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
75c1zn2A_
not modelled 99.5 33
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
76c1x3uA_
not modelled 99.5 37
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
77c6ideA_
not modelled 99.5 31
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator luxr family;
PDBTitle: crystal structure of the vibrio cholera vqma-ligand-dna complex2 provides molecular mechanisms for drug design
78c4xgcE_
not modelled 99.5 16
PDB header:dna binding protein
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
79c2rnjA_
not modelled 99.5 31
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
80c2v1uA_
not modelled 99.5 18
PDB header:replication
Chain: A: PDB Molecule:cell division control protein 6 homolog;
PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna
81d2fnaa2
not modelled 99.5 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
82d1yioa1
not modelled 99.5 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
83c2jpcA_
not modelled 99.5 32
PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
84d1hz4a_
not modelled 99.5 15
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Transcription factor MalT domain III
85c5xt2C_
not modelled 99.4 38
PDB header:dna binding protein
Chain: C: PDB Molecule:response regulator fixj;
PDBTitle: crystal structures of full-length fixj from b. japonicum crystallized2 in space group p212121
86c5udbA_
not modelled 99.4 12
PDB header:replication
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
87c6s2pN_
not modelled 99.3 24
PDB header:plant protein
Chain: N: PDB Molecule:nrc1;
PDBTitle: structure of the nb-arc domain from the tomato immune receptor nrc1
88c1w5sB_
not modelled 99.3 20
PDB header:replication
Chain: B: PDB Molecule:origin recognition complex subunit 2 orc2;
PDBTitle: structure of the aeropyrum pernix orc2 protein (adp form)
89c5uj7B_
not modelled 99.3 13
PDB header:dna binding protein
Chain: B: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structure of the active form of human origin recognition complex2 atpase motor module, complex subunits 1, 4, 5
90c5uj7C_
not modelled 99.2 16
PDB header:dna binding protein
Chain: C: PDB Molecule:origin recognition complex subunit 4;
PDBTitle: structure of the active form of human origin recognition complex2 atpase motor module, complex subunits 1, 4, 5
91c5ujmE_
not modelled 99.2 13
PDB header:replication
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: structure of the active form of human origin recognition complex and2 its atpase motor module
92d1fnna2
not modelled 99.2 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
93c4kxfF_
not modelled 99.1 16
PDB header:immune system
Chain: F: PDB Molecule:nlr family card domain-containing protein 4;
PDBTitle: crystal structure of nlrc4 reveals its autoinhibition mechanism
94c4kxfP_
not modelled 99.1 16
PDB header:immune system
Chain: P: PDB Molecule:nlr family card domain-containing protein 4;
PDBTitle: crystal structure of nlrc4 reveals its autoinhibition mechanism
95c5udb9_
not modelled 99.1 14
PDB header:replication
Chain: 9: PDB Molecule:cell division control protein 6;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
96c4xgcD_
not modelled 99.1 20
PDB header:dna binding protein
Chain: D: PDB Molecule:origin recognition complex subunit 4;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
97c4xgcA_
not modelled 99.0 16
PDB header:dna binding protein
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
98c6blbA_
not modelled 98.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 1.88 angstrom resolution crystal structure holliday junction atp-2 dependent dna helicase (ruvb) from pseudomonas aeruginosa in complex3 with adp
99c2chgB_
not modelled 98.9 15
PDB header:dna-binding protein
Chain: B: PDB Molecule:replication factor c small subunit;
PDBTitle: replication factor c domains 1 and 2
100c1sxjC_
not modelled 98.8 14
PDB header:replication
Chain: C: PDB Molecule:activator 1 40 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
101c3pfiB_
not modelled 98.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
102d1w5sa2
not modelled 98.7 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
103c5zr1A_
not modelled 98.7 13
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
104c3pvsA_
not modelled 98.7 17
PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
105c2chvE_
not modelled 98.6 14
PDB header:dna-binding protein
Chain: E: PDB Molecule:replication factor c small subunit;
PDBTitle: replication factor c adpnp complex
106d1sxjb2
not modelled 98.6 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
107c1sxjB_
not modelled 98.6 13
PDB header:replication
Chain: B: PDB Molecule:activator 1 37 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
108c1in8A_
not modelled 98.6 22
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction dna helicase ruvb;
PDBTitle: thermotoga maritima ruvb t158v
109c5udbE_
not modelled 98.6 17
PDB header:replication
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
110d1r6bx2
not modelled 98.6 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
111c6npyA_
not modelled 98.6 18
PDB header:immune system
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 3;
PDBTitle: cryo-em structure of nlrp3 bound to nek7
112d1sxjc2
not modelled 98.6 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
113c5khrO_
not modelled 98.6 17
PDB header:cell cycle
Chain: O: PDB Molecule:anaphase-promoting complex subunit 5;
PDBTitle: model of human anaphase-promoting complex/cyclosome complex (apc152 deletion mutant) in complex with the e2 ube2c/ubch10 poised for3 ubiquitin ligation to substrate (apc/c-cdc20-substrate-ube2c)
114c1iqpF_
not modelled 98.6 16
PDB header:replication
Chain: F: PDB Molecule:rfcs;
PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus
115c1xxhB_
not modelled 98.6 19
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii subunit gamma;
PDBTitle: atpgs bound e. coli clamp loader complex
116c6b5bA_
not modelled 98.5 19
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: cryo-em structure of the naip5-nlrc4-flagellin inflammasome
117d1sxjd2
not modelled 98.5 10
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
118d1njfa_
not modelled 98.5 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
119c6e111_
not modelled 98.5 17
PDB header:protein transport
Chain: 1: PDB Molecule:heat shock protein 101;
PDBTitle: ptex core complex in the resetting (compact) state
120c6em8H_
not modelled 98.5 16
PDB header:chaperone
Chain: H: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: s.aureus clpc resting state, c2 symmetrised

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite