Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2493_(-)_2808093_2808314
DateWed Aug 7 12:50:12 BST 2019
Unique Job ID8ad7aec981188e3b
SequenceVRTTLDLDDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.394 Y:30.050 Z:23.489
Model (left) based on template c3kk4B_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
Confidence and coverage
Confidence: 90.8% Coverage: 52%
38 residues ( 52% of your sequence) have been modelled with 90.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kk4B_
90.8 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
2c5x3tA_
89.4 31
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
3d2bsqe1
88.8 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
4c2h1oH_
88.5 15
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
5c2bj3D_
86.1 10
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
6c1q5vB_
82.8 21
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
7c2ca9B_
78.6 12
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
8d2bj7a1
78.0 11
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c6a7vU_
77.3 33
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
10d2hzaa1
67.6 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
11c2k5jB_
66.7 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
12d2hzab1
50.7 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
13d1xrxa1
41.8 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
14c1xrxD_
41.8 32
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
15c4aaiB_
24.7 29
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: thermostable protein from hyperthermophilic virus ssv-rh
16c4a1qB_
24.7 29
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park
17c2k29A_
23.4 13
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
18c3h87D_
21.5 26
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
19c2mdvB_
18.2 18
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
20c1t01B_
17.0 42
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:talin 1;
PDBTitle: vinculin complexed with the vbs1 helix from talin
21c1syqB_
not modelled 14.5 42
PDB header:cell adhesion
Chain: B: PDB Molecule:talin 1;
PDBTitle: human vinculin head domain vh1, residues 1-258, in complex with human2 talin's vinculin binding site 1, residues 607-636
22c5x7fA_
not modelled 12.3 32
PDB header:transferase
Chain: A: PDB Molecule:putative o-methyltransferase rv1220c;
PDBTitle: structure of a o-methyltransferase from mycobacterium tuberculosis at2 2.0 resolution
23c1ea4K_
not modelled 12.1 27
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
24d2cpga_
not modelled 12.1 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
25c5htlA_
not modelled 12.1 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:msha biogenesis protein mshe;
PDBTitle: structure of mshe with cdg
26c6ejfQ_
not modelled 11.1 7
PDB header:motor protein
Chain: Q: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (apoprotein form)
27c2gpyB_
not modelled 10.5 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
28c3fmtF_
not modelled 9.1 13
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
29c4hv0B_
not modelled 9.0 16
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
30c2c4rL_
not modelled 8.6 40
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
31c2an7A_
not modelled 8.3 24
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
32c4dbgB_
not modelled 7.9 28
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
33c1dl5A_
not modelled 7.2 4
PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
34c2jr6A_
not modelled 6.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
35d1v71a1
not modelled 6.5 11
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
36c2qezC_
not modelled 6.3 32
PDB header:lyase
Chain: C: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase heavy chain2 (yp_013784.1) from listeria monocytogenes 4b f2365 at 2.15 a3 resolution
37c2o8xA_
not modelled 5.8 24
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
38d1p1ca_
not modelled 5.6 17
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
39c3t98A_
not modelled 5.4 24
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
40c3ntvB_
not modelled 5.3 23
PDB header:transferase
Chain: B: PDB Molecule:mw1564 protein;
PDBTitle: crystal structure of a putative caffeoyl-coa o-methyltransferase from2 staphylococcus aureus
41c6gbrA_
not modelled 5.2 67
PDB header:viral protein
Chain: A: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the oligomerization domain of vp35 from reston2 virus, mercury derivative
42c6iyaD_
not modelled 5.2 29
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
43c5h2sA_
not modelled 5.2 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:piscidin-4;
PDBTitle: solution structure of tilapia piscidin 4 (tp4) from oreochromis2 niloticus
44d1s4ka_
not modelled 5.2 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
45c1zw2B_
not modelled 5.1 28
PDB header:protein binding
Chain: B: PDB Molecule:talin;
PDBTitle: vinculin head (0-258) in complex with the talin rod2 residues 2345-2369

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