Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2494_(-)_2808320_2808745
DateWed Aug 7 12:50:12 BST 2019
Unique Job ID6c497e4a95aaf3fc
SequenceVALLDVNALV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.081 Y:36.721 Z:39.419
Model (left) based on template d2h1ca1
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.8% Coverage: 91%
129 residues ( 91% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2h1ca1



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c3zvkC_



99.8 13
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
3c6a7vG_



99.8 16
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
4c5x3tD_



99.8 18
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
5c6nklA_



99.8 10
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
6c4chgC_



99.8 16
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
7c2fe1A_



99.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
8d2fe1a1



99.7 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c3tndC_



99.7 14
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
10c3h87B_



99.7 14
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
11c5wzfB_



99.7 14
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
12c4xgrG_



99.7 15
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
13d1v96a1



99.7 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
14c5sv2A_



99.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
15c5l6mC_



99.6 15
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
16d1y82a1



99.6 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c3dboB_



99.6 13
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
18d1w8ia_



99.3 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



99.3 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



99.2 22
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3ix7A_



not modelled 99.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c3i8oA_



not modelled 99.1 13
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
23d1o4wa_



not modelled 98.6 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c2hwwC_



not modelled 98.4 12
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
25c5f4hF_



not modelled 98.2 17
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c5ywwA_



not modelled 98.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c2lcqA_



not modelled 97.5 17
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
28c5jpqd_



not modelled 97.0 16
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 96.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c2hwyB_



not modelled 95.0 23
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c4mj7B_



not modelled 94.3 6
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
32c3v33A_



not modelled 84.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
33c3v32B_



not modelled 83.5 25
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c2mdtA_



not modelled 58.9 20
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
35c6chgE_



not modelled 30.9 26
PDB header:transferase
Chain: E: PDB Molecule:klla0e03521p;
PDBTitle: crystal structure of the yeast compass catalytic module
36c3g36D_



not modelled 24.9 42
PDB header:nuclear protein
Chain: D: PDB Molecule:protein dpy-30 homolog;
PDBTitle: crystal structure of the human dpy-30-like c-terminal domain
37c6bx3N_



not modelled 21.8 37
PDB header:gene regulation/transferase
Chain: N: PDB Molecule:compass component sdc1;
PDBTitle: structure of histone h3k4 methyltransferase
38c5b52B_



not modelled 21.7 22
PDB header:transcription
Chain: B: PDB Molecule:h-ns family protein mvat;
PDBTitle: crystal structure of the n-terminal domain of h-ns family protein turb
39c4rtaB_



not modelled 17.1 42
PDB header:protein binding
Chain: B: PDB Molecule:protein dpy-30 homolog;
PDBTitle: cystal structure of the dpy30 for mll/set1 compass h3k4 trimethylation
40c6d6rK_



not modelled 11.1 15
PDB header:hydrolase
Chain: K: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
41c3dy0B_



not modelled 10.3 33
PDB header:blood clotting, hydrolase inhibitor
Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved pci bound to heparin
42c6nmiD_



not modelled 9.9 19
PDB header:transcription
Chain: D: PDB Molecule:general transcription factor iih subunit 4, p52;
PDBTitle: cryo-em structure of the human tfiih core complex
43c1lq8H_



not modelled 9.7 33
PDB header:blood clotting
Chain: H: PDB Molecule:plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved protein c inhibitor
44d1cmwa2



not modelled 9.7 35
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
45c4g25A_



not modelled 8.7 37
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
46c2lr8A_



not modelled 7.8 30
PDB header:apoptosis
Chain: A: PDB Molecule:casp8-associated protein 2;
PDBTitle: solution nmr structure of casp8-associated protein 2 from homo2 sapiens, northeast structural genomics consortium (nesg) target3 hr8150a
47d1k1sa1



not modelled 7.8 17
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
48c1jb0M_



not modelled 7.1 43
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem 1 reaction centre subunit xii;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
49c4fe1M_



not modelled 7.1 43
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
50d1jb0m_



not modelled 7.1 43
Fold:Single transmembrane helix
Superfamily:Subunit XII of photosystem I reaction centre, PsaM
Family:Subunit XII of photosystem I reaction centre, PsaM
51d2a3qa1



not modelled 6.2 26
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
52c2q4pA_



not modelled 6.2 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
53d3by5a1



not modelled 6.1 12
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
54c3by5A_



not modelled 6.1 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein;
PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
55d2a7wa1



not modelled 5.4 18
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
56c2a7wF_



not modelled 5.4 18
PDB header:hydrolase
Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7

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