Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2498c_(citE)_2812365_2813186
DateWed Aug 7 12:50:12 BST 2019
Unique Job ID3f053cd394eecbae
SequenceMNLRAAGPGW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.450 Y:49.704 Z:44.296
Model (left) based on template c6arbA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:citrate lyase subunit beta-like protein;
PDBTitle: crystal structure of protein cite from mycobacterium tuberculosis in2 complex with magnesium, pyruvate and coenzyme a
Confidence and coverage
Confidence:100.0% Coverage: 98%
268 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6arbA_
100.0 100
PDB header:lyase
Chain: A: PDB Molecule:citrate lyase subunit beta-like protein;
PDBTitle: crystal structure of protein cite from mycobacterium tuberculosis in2 complex with magnesium, pyruvate and coenzyme a
2c4l7zC_
100.0 28
PDB header:lyase
Chain: C: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of chloroflexus aurantiacus malyl-coa lyase
3c5vxsF_
100.0 35
PDB header:lyase
Chain: F: PDB Molecule:citrate lyase subunit beta-like protein, mitochondrial;
PDBTitle: crystal structure analysis of human clybl in apo form
4c4roqA_
100.0 31
PDB header:lyase
Chain: A: PDB Molecule:malyl-coa lyase/beta-methylmalyl-coa lyase;
PDBTitle: crystal structure of malyl-coa lyase from methylobacterium extorquens
5c4l9zA_
100.0 33
PDB header:lyase
Chain: A: PDB Molecule:malyl-coa lyase;
PDBTitle: crystal structure of rhodobacter sphaeroides malyl-coa lyase in2 complex with magnesium, oxalate, and coa
6c3r4iB_
100.0 24
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution
7c3pugA_
100.0 19
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate
8d1u5ha_
100.0 98
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
9c3qqwC_
100.0 24
PDB header:lyase
Chain: C: PDB Molecule:putative citrate lyase;
PDBTitle: crystal structure of a putative lyase (reut_b4148) from ralstonia2 eutropha jmp134 at 2.44 a resolution
10c1u5vA_
100.0 98
PDB header:lyase
Chain: A: PDB Molecule:cite;
PDBTitle: structure of cite complexed with triphosphate group of atp form2 mycobacterium tuberculosis
11c3qllB_
100.0 37
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of ripc from yersinia pestis
12c1sgjB_
100.0 32
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase, beta subunit;
PDBTitle: crystal structure of citrate lyase beta subunit
13d1sgja_
100.0 32
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
14c3cuzA_
100.0 22
PDB header:transferase
Chain: A: PDB Molecule:malate synthase a;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
15c3cuxA_
100.0 21
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
16d1dxea_
100.0 21
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
17c4tv6A_
100.0 22
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyglucarate aldolase;
PDBTitle: crystal structure of citrate synthase variant sbng e151q
18c4mf4F_
100.0 25
PDB header:lyase
Chain: F: PDB Molecule:hpch/hpai aldolase/citrate lyase family protein;
PDBTitle: crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
19c4b5sB_
100.0 19
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-2-oxo-heptane-1,7-dioate aldolase;
PDBTitle: crystal structures of divalent metal dependent pyruvate aldolase,2 hpai, in complex with pyruvate
20c2v5jB_
100.0 18
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
21c1izcA_
not modelled 100.0 18
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
22d1izca_
not modelled 100.0 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
23c6r62A_
not modelled 100.0 23
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of a class ii pyruvate aldolase from sphingomonas2 wittichii rw1 in complex with hydroxypyruvate
24c2vwtA_
not modelled 100.0 19
PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
25c3qz6A_
not modelled 100.0 20
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
26c5vfbB_
not modelled 99.9 21
PDB header:transferase
Chain: B: PDB Molecule:malate synthase g;
PDBTitle: 1.36 angstrom resolution crystal structure of malate synthase g from2 pseudomonas aeruginosa in complex with glycolic acid.
27d1e0ta2
not modelled 99.9 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
28d1n8ia_
not modelled 99.9 23
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
29d1d8ca_
not modelled 99.9 17
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
30d1a3xa2
not modelled 99.8 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
31d1pkla2
not modelled 99.8 14
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
32d2g50a2
not modelled 99.7 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
33d1liua2
not modelled 99.7 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate kinase
34c4fxjB_
not modelled 99.4 19
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase isozymes m1/m2;
PDBTitle: structure of m2 pyruvate kinase in complex with phenylalanine
35c1e0tD_
not modelled 99.2 20
PDB header:phosphotransferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: r292d mutant of e. coli pyruvate kinase
36c4imaD_
not modelled 99.0 19
PDB header:transferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: the structure of c436m-hlpyk in complex with citrate/mn/atp/fru-1,6-bp
37d1h6za1
not modelled 99.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
38c2hroA_
not modelled 99.0 19
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus
39c3khdC_
not modelled 99.0 18
PDB header:transferase
Chain: C: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pff1300w.
40c5ws9C_
not modelled 99.0 20
PDB header:transferase
Chain: C: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase (pyk) from mycobacterium tuberculosis in complex with2 oxalate, atp and allosteric activator amp
41c6du6D_
not modelled 98.9 18
PDB header:transferase
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of the pyruvate kinase (pk1) from the mosquito aedes2 aegypti
42c1a3wB_
not modelled 98.9 19
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
43c1t5aB_
not modelled 98.9 19
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme;
PDBTitle: human pyruvate kinase m2
44c1pklB_
not modelled 98.9 18
PDB header:transferase
Chain: B: PDB Molecule:protein (pyruvate kinase);
PDBTitle: the structure of leishmania pyruvate kinase
45c2hwgA_
not modelled 98.9 19
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of phosphorylated enzyme i of the phosphoenolpyruvate:sugar2 phosphotransferase system
46c3e0vB_
not modelled 98.9 19
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions
47c2vgbB_
not modelled 98.9 18
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase isozymes r/l;
PDBTitle: human erythrocyte pyruvate kinase
48c1aqfB_
not modelled 98.9 21
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase;
PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate
49c3qtgA_
not modelled 98.9 22
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pyruvate kinase from pyrobaculum aerophilum
50c2e28A_
not modelled 98.8 20
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus
51c2bg5C_
not modelled 98.8 20
PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme i-domain2 from the thermoanaerobacter tengcongensis pep: sugar3 phosphotransferase system (pts)
52c3t07D_
not modelled 98.8 18
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
53c1h6zA_
not modelled 98.7 22
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei
54c3khdA_
not modelled 98.7 17
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pff1300w.
55c3eoeC_
not modelled 98.7 20
PDB header:transferase
Chain: C: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
56d1vbga1
not modelled 98.7 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
57c3ma8A_
not modelled 98.6 14
PDB header:transferase
Chain: A: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum
58c1vbhA_
not modelled 98.6 19
PDB header:transferase
Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase;
PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
59c2olsA_
not modelled 98.5 16
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate synthase;
PDBTitle: the crystal structure of the phosphoenolpyruvate synthase from2 neisseria meningitidis
60c1kblA_
not modelled 98.4 18
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: pyruvate phosphate dikinase
61d1kbla1
not modelled 98.4 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Pyruvate phosphate dikinase, C-terminal domain
62c3odmE_
not modelled 98.3 17
PDB header:lyase
Chain: E: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: archaeal-type phosphoenolpyruvate carboxylase
63c1jqoA_
not modelled 96.0 20
PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize
64d1jqoa_
not modelled 96.0 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
65d1jqna_
not modelled 95.9 17
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
66c5nc8B_
not modelled 82.1 18
PDB header:transport protein
Chain: B: PDB Molecule:potassium efflux system protein;
PDBTitle: shewanella denitrificans kef ctd in amp bound form
67d2hmva1
not modelled 73.4 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
68c2bdqA_
not modelled 72.6 15
PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis protein cutc from2 streptococcus agalactiae, northeast strucural genomics target sar15.
69c3lyeA_
not modelled 63.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
70d1lssa_
not modelled 54.5 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
71c4g65A_
not modelled 45.0 17
PDB header:transport protein
Chain: A: PDB Molecule:trk system potassium uptake protein trka;
PDBTitle: potassium transporter peripheral membrane component (trka) from vibrio2 vulnificus
72c2c3zA_
not modelled 44.7 17
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
73c3fa4D_
not modelled 44.1 18
PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
74c3c85A_
not modelled 39.9 7
PDB header:transport protein
Chain: A: PDB Molecule:putative glutathione-regulated potassium-efflux system
PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus
75d1xi3a_
not modelled 35.3 16
Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
76c3eywA_
not modelled 34.3 19
PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
77d1qopa_
not modelled 31.6 19
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
78c3fwzA_
not modelled 27.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ybal;
PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli
79d1id1a_
not modelled 27.4 9
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
80c4lsbA_
not modelled 25.4 14
PDB header:lyase
Chain: A: PDB Molecule:lyase/mutase;
PDBTitle: crystal structure of a putative lyase/mutase from burkholderia2 cenocepacia j2315
81c1fcbA_
not modelled 24.2 13
PDB header:oxidoreductase (ch-oh(d)-cytochrome(a))
Chain: A: PDB Molecule:flavocytochrome b2;
PDBTitle: molecular structure of flavocytochrome b2 at 2.4 angstroms resolution
82c2r94B_
not modelled 23.5 20
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
83c6btmD_
not modelled 23.2 16
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
84d1i4na_
not modelled 23.1 14
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
85c2w91A_
not modelled 22.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase d;
PDBTitle: structure of a streptococcus pneumoniae family 85 glycoside2 hydrolase, endo-d.
86d1a53a_
not modelled 21.6 19
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
87c4mg4G_
not modelled 21.4 13
PDB header:unknown function
Chain: G: PDB Molecule:phosphonomutase;
PDBTitle: crystal structure of a putative phosphonomutase from burkholderia2 cenocepacia j2315
88c2g1uA_
not modelled 21.4 13
PDB header:transport protein
Chain: A: PDB Molecule:hypothetical protein tm1088a;
PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
89d1a0ea_
not modelled 21.4 18
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
90d1o4ua1
not modelled 21.3 14
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
91c3gdbA_
not modelled 21.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein spr0440;
PDBTitle: crystal structure of spr0440 glycoside hydrolase domain,2 endo-d from streptococcus pneumoniae r6
92c5butG_
not modelled 21.0 13
PDB header:membrane protein
Chain: G: PDB Molecule:ktr system potassium uptake protein a,ktr system potassium
PDBTitle: crystal structure of inactive conformation of ktrab k+ transporter
93c4e6zA_
not modelled 19.0 17
PDB header:transport protein
Chain: A: PDB Molecule:apicoplast tic22, putative;
PDBTitle: tic22 from plasmodium falciparum
94c2ze3A_
not modelled 18.8 10
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
95c4hpfB_
not modelled 18.3 13
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:potassium channel subfamily u member 1;
PDBTitle: structure of the human slo3 gating ring
96d2fy8a1
not modelled 16.8 18
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
97c6bmaA_
not modelled 16.4 15
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: the crystal structure of indole-3-glycerol phosphate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168
98c4gx5D_
not modelled 15.6 18
PDB header:transport protein
Chain: D: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel
99c3fhaD_
not modelled 15.6 31
PDB header:hydrolase
Chain: D: PDB Molecule:endo-beta-n-acetylglucosaminidase;
PDBTitle: structure of endo-beta-n-acetylglucosaminidase a

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite