Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2503c_(scoB)_2818481_2819137
DateWed Aug 7 12:50:13 BST 2019
Unique Job IDbffb10b934796520
SequenceMSAPGWSRDE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.105 Y:42.441 Z:49.071
Model (left) based on template d1ooya1
Top template information
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
Confidence and coverage
Confidence:100.0% Coverage: 95%
207 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ooya1



100.0 60
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
2c3rrlD_



100.0 54
PDB header:transferase
Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit b;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
3c3cdkD_



100.0 57
PDB header:transferase
Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase
PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis
4c1ooyA_



100.0 56
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase,
PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart
5c5n02B_



100.0 17
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
6d1poib_



100.0 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
7c4kgbB_



100.0 57
PDB header:transferase
Chain: B: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase;
PDBTitle: structure of succinyl-coa: 3-ketoacid coa transferase from drosophila2 melanogaster
8c5dbnD_



100.0 53
PDB header:transferase
Chain: D: PDB Molecule:acetate coa-transferase subunit beta;
PDBTitle: crystal structure of atoda complex
9d2ahua1



100.0 28
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
10c2ahvC_



100.0 28
PDB header:transferase
Chain: C: PDB Molecule:putative enzyme ydif;
PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1
11c6conF_



100.0 20
PDB header:hydrolase
Chain: F: PDB Molecule:coa-transferase subunit beta;
PDBTitle: crystal structure of mycobacterium tuberculosis ipdab
12c6co6B_



100.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
13c3gk7A_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum
14c3eh7A_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83
15c2oasA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119.
16c2nvvF_



100.0 14
PDB header:hydrolase
Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein;
PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16.
17c2g39A_



100.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:acetyl-coa hydrolase;
PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa
18c4eu4A_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:acetate coenzyme a transferase;
PDBTitle: succinyl-coa: acetate coa-transferase (aarch6) in complex with coa2 (hexagonal lattice)
19c3qlkB_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:coenzyme a transferase;
PDBTitle: crystal structure of ripa from yersinia pestis
20d2g39a2



100.0 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
21c3d3uA_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26
22d1xr4a2



not modelled 100.0 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
23c1xr4B_



not modelled 100.0 19
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase;
PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium]
24c2hj0A_



not modelled 100.0 18
PDB header:lyase
Chain: A: PDB Molecule:putative citrate lyase, alfa subunit;
PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 .
25c5vitP_



not modelled 99.9 17
PDB header:transferase
Chain: P: PDB Molecule:mdca;
PDBTitle: crystal structure of a pseudomonas malonate decarboxylase hetero-2 tetramer in complex with malonate
26d1m0sa1



not modelled 98.6 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
27c5uf2A_



not modelled 98.5 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5 phosphate isomerase a from neisseria2 gonorrhoeae
28d1uj4a1



not modelled 98.5 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
29c1lk5C_



not modelled 98.4 25
PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
30c6eepA_



not modelled 98.4 21
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase from legionella2 pneumophila
31c3hheA_



not modelled 98.4 20
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae
32c3kwmC_



not modelled 98.4 18
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
33c1m0sA_



not modelled 98.3 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: northeast structural genomics consortium (nesg id ir21)
34c3l7oB_



not modelled 98.3 23
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
35c6j1kA_



not modelled 98.3 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from ochrobactrum2 sp. csl1
36d1lk5a1



not modelled 98.3 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
37c4gmkB_



not modelled 98.2 21
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118
38c2f8mB_



not modelled 98.2 17
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum
39c1lkzB_



not modelled 98.2 18
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia) from2 escherichia coli.
40c1uj6A_



not modelled 98.0 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate
41c2pjmA_



not modelled 97.7 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
42c3cdkA_



not modelled 97.7 18
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase
PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis
43c5mzyA_



not modelled 97.4 22
PDB header:lyase
Chain: A: PDB Molecule:glutaconate coa-transferase family, subunit a;
PDBTitle: crystal structure of the decarboxylase aiba/aibb in complex with a2 possible transition state analog
44d1k6da_



not modelled 97.4 24
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
45c3rrlC_



not modelled 97.1 16
PDB header:transferase
Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
46d1ooya2



not modelled 97.0 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
47d2g39a1



not modelled 96.9 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
48d1poia_



not modelled 96.7 21
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
49d1t9ka_



not modelled 96.7 17
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
50d1t5oa_



not modelled 96.4 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
51c4nmlA_



not modelled 96.3 25
PDB header:isomerase
Chain: A: PDB Molecule:ribulose 5-phosphate isomerase;
PDBTitle: 2.60 angstrom resolution crystal structure of putative ribose 5-2 phosphate isomerase from toxoplasma gondii me49 in complex with dl-3 malic acid
52c2yvkA_



not modelled 96.2 15
PDB header:isomerase
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis
53c6a34B_



not modelled 96.1 17
PDB header:isomerase
Chain: B: PDB Molecule:putative methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate isomerase from2 pyrococcus horikoshii ot3 - form i
54c6co9A_



not modelled 95.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:probable coa-transferase alpha subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab cochea-coa complex
55c3u7jA_



not modelled 95.8 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
56c4x84C_



not modelled 95.4 16
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
57d2ahua2



not modelled 95.3 17
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
58d1vb5a_



not modelled 95.1 15
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
59c3ecsD_



not modelled 95.0 16
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of human eif2b alpha
60c4zemB_



not modelled 94.3 16
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif2b-like protein,
PDBTitle: crystal structure of eif2b beta from chaetomium thermophilum
61c5b04B_



not modelled 93.7 20
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
62c6i3mD_



not modelled 93.2 18
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
63c3a11D_



not modelled 93.1 18
PDB header:isomerase
Chain: D: PDB Molecule:translation initiation factor eif-2b, delta subunit;
PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
64c4zeoH_



not modelled 93.0 14
PDB header:translation
Chain: H: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of eif2b delta from chaetomium thermophilum
65c1xtzA_



not modelled 92.8 20
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes
66d2a0ua1



not modelled 92.6 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
67c6i7tB_



not modelled 92.2 19
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: eif2b:eif2 complex
68d1xr4a1



not modelled 91.5 26
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
69c5b04G_



not modelled 91.4 14
PDB header:translation
Chain: G: PDB Molecule:probable translation initiation factor eif-2b subunit
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
70c4ldrA_



not modelled 91.1 16
PDB header:isomerase, cell invasion
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: structure of the s283y mutant of mrdi
71c6i3mF_



not modelled 91.1 9
PDB header:translation
Chain: F: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
72c5dboA_



not modelled 87.1 13
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
73c5b04C_



not modelled 86.7 13
PDB header:translation
Chain: C: PDB Molecule:probable translation initiation factor eif-2b subunit beta;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
74c6ezoD_



not modelled 82.8 14
PDB header:membrane protein
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
75d1o8bb1



not modelled 82.3 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
76c3nzeB_



not modelled 81.9 15
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.
77d2gnpa1



not modelled 79.3 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
78c6ezoH_



not modelled 76.2 16
PDB header:membrane protein
Chain: H: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
79c2w48D_



not modelled 76.0 14
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
80c4oqqA_



not modelled 68.0 15
PDB header:transcription
Chain: A: PDB Molecule:deoxyribonucleoside regulator;
PDBTitle: structure of the effector-binding domain of deoxyribonucleoside2 regulator deor from bacillus subtilis
81d3efba1



not modelled 64.9 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
82c6qg0G_



not modelled 48.8 12
PDB header:translation
Chain: G: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model 1)
83c1w2wJ_



not modelled 46.8 20
PDB header:isomerase
Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-phosphate2 isomerase related to regulatory eif2b subunits
84d1soua_



not modelled 25.3 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
85d1wkca_



not modelled 24.0 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
86c2ri0B_



not modelled 22.2 24
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans
87c2eo0A_



not modelled 21.0 24
PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical protein st1444;
PDBTitle: crystal structure of holliday junction resolvase st1444
88d2okga1



not modelled 14.2 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
89c5cl2A_



not modelled 14.0 15
PDB header:protein binding
Chain: A: PDB Molecule:sporulation-control protein spo0m;
PDBTitle: crystal structure of spo0m, sporulation control protein, from bacillus2 subtilis.
90c3kv1A_



not modelled 11.8 22
PDB header:transcription
Chain: A: PDB Molecule:transcriptional repressor;
PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri
91c4go1A_



not modelled 11.3 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
92d1gefa_



not modelled 8.9 27
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hjc-like
93c4r9nA_



not modelled 8.9 11
PDB header:transcription
Chain: A: PDB Molecule:lmo0547 protein;
PDBTitle: deor family transcriptional regulator from listeria monocytogenes.
94c2k4mA_



not modelled 8.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0146 protein mth_1000;
PDBTitle: solution nmr structure of m. thermoautotrophicum protein mth_1000,2 northeast structural genomics consortium target tr8
95d1pvda3



not modelled 8.4 12
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
96c2o0mA_



not modelled 7.7 10
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, sorc family;
PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis
97d2o0ma1



not modelled 7.7 10
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
98c4wt3A_



not modelled 7.6 13
PDB header:chaperone
Chain: A: PDB Molecule:rubisco accumulation factor 1, isoform 2;
PDBTitle: the n-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana
99c2jcbA_



not modelled 7.5 15
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein;
PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489)

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