Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2504c_(scoA)_2819134_2819880
DateWed Aug 7 12:50:13 BST 2019
Unique Job IDd2e4029a3b2091b0
SequenceMDKVVATAAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.205 Y:53.457 Z:44.684
Model (left) based on template d1ooya2
Top template information
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
Confidence and coverage
Confidence:100.0% Coverage: 98%
242 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ooya2



100.0 56
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
2d2ahua2



100.0 25
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
3d1poia_



100.0 24
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
4c3rrlC_



100.0 53
PDB header:transferase
Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
5c6co9A_



100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:probable coa-transferase alpha subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab cochea-coa complex
6c3cdkA_



100.0 61
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase
PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis
7c5mzyA_



100.0 28
PDB header:lyase
Chain: A: PDB Molecule:glutaconate coa-transferase family, subunit a;
PDBTitle: crystal structure of the decarboxylase aiba/aibb in complex with a2 possible transition state analog
8c4kgbB_



100.0 47
PDB header:transferase
Chain: B: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase;
PDBTitle: structure of succinyl-coa: 3-ketoacid coa transferase from drosophila2 melanogaster
9c1ooyA_



100.0 56
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase,
PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart
10c2ahvC_



100.0 25
PDB header:transferase
Chain: C: PDB Molecule:putative enzyme ydif;
PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1
11d1k6da_



100.0 43
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
12c2hj0A_



100.0 18
PDB header:lyase
Chain: A: PDB Molecule:putative citrate lyase, alfa subunit;
PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 .
13c3qlkB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:coenzyme a transferase;
PDBTitle: crystal structure of ripa from yersinia pestis
14c1xr4B_



100.0 21
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase;
PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium]
15c4eu4A_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:acetate coenzyme a transferase;
PDBTitle: succinyl-coa: acetate coa-transferase (aarch6) in complex with coa2 (hexagonal lattice)
16c3gk7A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum
17c2oasA_



100.0 16
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119.
18c2g39A_



100.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:acetyl-coa hydrolase;
PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa
19c5vitP_



99.9 23
PDB header:transferase
Chain: P: PDB Molecule:mdca;
PDBTitle: crystal structure of a pseudomonas malonate decarboxylase hetero-2 tetramer in complex with malonate
20c2nvvF_



99.9 20
PDB header:hydrolase
Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein;
PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16.
21d1xr4a1



not modelled 99.9 22
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
22c3eh7A_



not modelled 99.9 22
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83
23c3d3uA_



not modelled 99.9 17
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26
24d2g39a1



not modelled 99.9 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
25c6eepA_



not modelled 98.1 26
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase from legionella2 pneumophila
26c5uf2A_



not modelled 97.9 26
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5 phosphate isomerase a from neisseria2 gonorrhoeae
27c5dbnD_



not modelled 97.8 18
PDB header:transferase
Chain: D: PDB Molecule:acetate coa-transferase subunit beta;
PDBTitle: crystal structure of atoda complex
28c1m0sA_



not modelled 97.8 25
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: northeast structural genomics consortium (nesg id ir21)
29c3l7oB_



not modelled 97.8 23
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
30d2g39a2



not modelled 97.8 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
31c2f8mB_



not modelled 97.7 22
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum
32d1m0sa1



not modelled 97.6 27
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
33c4gmkB_



not modelled 97.6 23
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118
34c6j1kA_



not modelled 97.5 25
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from ochrobactrum2 sp. csl1
35c1lk5C_



not modelled 97.5 29
PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
36c1lkzB_



not modelled 97.5 27
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia) from2 escherichia coli.
37c3hheA_



not modelled 97.5 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae
38c3kwmC_



not modelled 97.4 27
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
39d1xr4a2



not modelled 97.4 23
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
40c5n02B_



not modelled 97.2 22
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
41c1uj6A_



not modelled 97.1 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate
42d1uj4a1



not modelled 97.0 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
43c2pjmA_



not modelled 96.7 15
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
44c3cdkD_



not modelled 96.7 19
PDB header:transferase
Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase
PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis
45c4nmlA_



not modelled 96.5 23
PDB header:isomerase
Chain: A: PDB Molecule:ribulose 5-phosphate isomerase;
PDBTitle: 2.60 angstrom resolution crystal structure of putative ribose 5-2 phosphate isomerase from toxoplasma gondii me49 in complex with dl-3 malic acid
46c3u7jA_



not modelled 96.3 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
47d1lk5a1



not modelled 96.2 28
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
48c4x84C_



not modelled 96.1 32
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
49c6conF_



not modelled 96.0 25
PDB header:hydrolase
Chain: F: PDB Molecule:coa-transferase subunit beta;
PDBTitle: crystal structure of mycobacterium tuberculosis ipdab
50d1poib_



not modelled 95.4 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
51d1ooya1



not modelled 95.2 27
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
52c1xtzA_



not modelled 95.1 24
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes
53c6co6B_



not modelled 95.1 23
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
54d2ahua1



not modelled 93.3 28
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
55c3rrlD_



not modelled 93.2 22
PDB header:transferase
Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit b;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
56c3ecsD_



not modelled 91.2 20
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of human eif2b alpha
57d1t9ka_



not modelled 90.3 23
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
58c5b04B_



not modelled 89.3 25
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
59c6qg0G_



not modelled 88.1 18
PDB header:translation
Chain: G: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model 1)
60d1t5oa_



not modelled 85.9 11
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
61c5b04G_



not modelled 85.3 17
PDB header:translation
Chain: G: PDB Molecule:probable translation initiation factor eif-2b subunit
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
62c4zemB_



not modelled 81.3 16
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif2b-like protein,
PDBTitle: crystal structure of eif2b beta from chaetomium thermophilum
63d1o8bb1



not modelled 79.1 26
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
64c6i7tB_



not modelled 78.5 20
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: eif2b:eif2 complex
65c6i3mD_



not modelled 77.4 17
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
66c5b04C_



not modelled 74.0 10
PDB header:translation
Chain: C: PDB Molecule:probable translation initiation factor eif-2b subunit beta;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
67c3a11D_



not modelled 72.9 17
PDB header:isomerase
Chain: D: PDB Molecule:translation initiation factor eif-2b, delta subunit;
PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
68d1vb5a_



not modelled 68.6 22
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
69d2a0ua1



not modelled 65.3 12
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
70c4zeoH_



not modelled 64.7 22
PDB header:translation
Chain: H: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of eif2b delta from chaetomium thermophilum
71c6a34B_



not modelled 64.5 15
PDB header:isomerase
Chain: B: PDB Molecule:putative methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate isomerase from2 pyrococcus horikoshii ot3 - form i
72c4oqqA_



not modelled 62.1 17
PDB header:transcription
Chain: A: PDB Molecule:deoxyribonucleoside regulator;
PDBTitle: structure of the effector-binding domain of deoxyribonucleoside2 regulator deor from bacillus subtilis
73c6ezoD_



not modelled 56.0 18
PDB header:membrane protein
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
74c2yvkA_



not modelled 55.4 15
PDB header:isomerase
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis
75c3wrwE_



not modelled 53.1 17
PDB header:transferase
Chain: E: PDB Molecule:tm-1 protein;
PDBTitle: crystal structure of the n-terminal domain of resistance protein
76c3smaD_



not modelled 52.7 25
PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
77c6mb6A_



not modelled 48.8 31
PDB header:transferase
Chain: A: PDB Molecule:aac(3)-iiib protein;
PDBTitle: aac-iiib binary with coash
78c5ht0B_



not modelled 47.1 22
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside acetyltransferase hmb0005;
PDBTitle: crystal structure of an antibiotic_nat family aminoglycoside2 acetyltransferase hmb0038 from an uncultured soil metagenomic sample3 in complex with coenzyme a
79c3nzeB_



not modelled 45.2 15
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.
80d2nyga1



not modelled 43.7 23
Fold:TTHA0583/YokD-like
Superfamily:TTHA0583/YokD-like
Family:Aminoglycoside 3-N-acetyltransferase-like
81d2r5fa1



not modelled 43.6 10
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
82c6i3mF_



not modelled 42.7 11
PDB header:translation
Chain: F: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
83c5dboA_



not modelled 42.0 26
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
84c4r9nA_



not modelled 42.0 16
PDB header:transcription
Chain: A: PDB Molecule:lmo0547 protein;
PDBTitle: deor family transcriptional regulator from listeria monocytogenes.
85d2gnpa1



not modelled 41.9 11
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
86d3efba1



not modelled 31.3 21
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
87c3e4fB_



not modelled 30.3 17
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase;
PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis
88c1dbgA_



not modelled 28.3 16
PDB header:lyase
Chain: A: PDB Molecule:chondroitinase b;
PDBTitle: crystal structure of chondroitinase b
89d1o8ba1



not modelled 25.0 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
90c2w48D_



not modelled 24.6 15
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
91d2grea1



not modelled 23.6 26
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
92c5mvrA_



not modelled 23.6 18
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
93c6bc3A_



not modelled 22.2 15
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aac 3-vi protein;
PDBTitle: cryo x-ray structure of sisomicin bound aac-via
94c3izbP_



not modelled 21.2 13
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
95c6mn5A_



not modelled 20.4 25
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aminoglycoside n(3)-acetyltransferase, aac(3)-iva;
PDBTitle: crystal structure of aminoglycoside acetyltransferase aac(3)-iva,2 h154a mutant, in complex with gentamicin c1a
96c3iz6P_



not modelled 20.2 19
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
97d1ofla_



not modelled 19.9 16
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Chondroitinase B
98d1jb7a3



not modelled 18.6 33
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
99d1soua_



not modelled 18.5 10
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase

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