Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2507_(-)_2822448_2823269
DateWed Aug 7 12:50:13 BST 2019
Unique Job IDd260e871b0176152
SequenceMNDPRRPQRF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.713 Y:46.006 Z:29.534
Model (left) based on template c2lw3A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence: 99.9% Coverage: 31%
84 residues ( 31% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 68% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lw3A_
99.9 21
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
2d1ywka1
65.4 22
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
3c2kerA_
61.4 20
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
4c1ywkE_
61.4 22
PDB header:isomerase
Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol-
PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis
5c4p7hB_
54.5 6
PDB header:motor/fluorescent protein
Chain: B: PDB Molecule:myosin-7,green fluorescent protein;
PDBTitle: structure of human beta-cardiac myosin motor domain::gfp chimera
6c3osvC_
54.2 10
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
7d1uvqa1
38.0 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
8d1xrua1
36.3 20
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:KduI-like
9c3u8pB_
35.8 6
PDB header:fluorescent protein, electron transport
Chain: B: PDB Molecule:cytochrome b562 integral fusion with enhanced green
PDBTitle: cytochrome b562 integral fusion with egfp
10c2kvzA_
33.6 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ispe;
PDBTitle: structure of residues 161-235 of putative peptidoglycan binding2 protein lmo0835 from listeria monocytogenes: target lmr64b of the3 northeast structural genomics consortium
11d1hxma2
29.7 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
12c2l04A_
29.1 12
PDB header:viral protein
Chain: A: PDB Molecule:major tail protein v;
PDBTitle: the solution structure of the c-terminal ig-like domain of the2 bacteriophage lambda tail tube protein
13c2gw4D_
27.1 20
PDB header:luminescent protein
Chain: D: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
14d1ok8a2
27.0 21
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
15c5e09A_
26.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structural insight of a trimodular halophilic cellulase with a family2 46 carbohydrate-binding module
16c2l23A_
25.7 16
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 25;
PDBTitle: nmr structure of the acid (activator interacting domain) of the human2 mediator med25 protein
17d2iada1
25.2 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
18d1kona_
25.1 25
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
19c3pjyB_
24.8 19
PDB header:transcription regulator
Chain: B: PDB Molecule:hypothetical signal peptide protein;
PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution
20c5y00A_
24.4 9
PDB header:fluorescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: acid-tolerant monomeric gfp, gamillus, fluorescence (on) state
21d1jk8a1
not modelled 24.2 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
22d1fltx_
not modelled 24.0 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
23c2c9iG_
not modelled 24.0 20
PDB header:luminescent protein
Chain: G: PDB Molecule:green fluorescent protein asfp499;
PDBTitle: structure of the fluorescent protein asfp499 from anemonia2 sulcata
24c2z6zA_
not modelled 23.9 17
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent protein dronpa;
PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state
25c1q40C_
not modelled 23.1 22
PDB header:translation
Chain: C: PDB Molecule:mrna transport regulator mtr2;
PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex
26c5mwcD_
not modelled 23.0 11
PDB header:fluorescent protein
Chain: D: PDB Molecule:genetically-encoded green calcium indicator ntnc;
PDBTitle: crystal structure of the genetically-encoded green calcium indicator2 ntnc in its calcium bound state
27d1mhna_
not modelled 22.6 8
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
28d1ok0a_
not modelled 22.5 11
Fold:alpha-Amylase inhibitor tendamistat
Superfamily:alpha-Amylase inhibitor tendamistat
Family:alpha-Amylase inhibitor tendamistat
29c3pnwX_
not modelled 20.8 22
PDB header:protein binding/immune system
Chain: X: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab
30c3nezB_
not modelled 20.8 9
PDB header:fluorescent protein
Chain: B: PDB Molecule:mrojoa;
PDBTitle: mrojoa
31d1kska3
not modelled 20.6 55
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
32d1iaka1
not modelled 20.5 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
33d1s9va1
not modelled 19.7 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
34d1lfpa_
not modelled 19.4 17
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
35c4gupB_
not modelled 19.0 15
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of mhc-class i related molecule mr1
36c3vwjB_
not modelled 19.0 15
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the human nkt tcr-cd1d-c20:2 complex
37d1liua1
not modelled 18.9 16
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
38d1pkma1
not modelled 18.7 10
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
39c4oleD_
not modelled 18.6 42
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:next to brca1 gene 1 protein;
PDBTitle: crystal structure of a neighbor of brca1 gene 1 (nbr1) from homo2 sapiens at 2.52 a resolution
40c3nezA_
not modelled 18.3 9
PDB header:fluorescent protein
Chain: A: PDB Molecule:mrojoa;
PDBTitle: mrojoa
41c5aeoA_
not modelled 17.9 24
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
42c2c9jG_
not modelled 17.7 17
PDB header:luminescent protein
Chain: G: PDB Molecule:green fluorescent protein fp512;
PDBTitle: structure of the fluorescent protein cmfp512 at 1.35a from2 cerianthus membranaceus
43d2oz4a2
not modelled 17.5 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
44c3lf4B_
not modelled 17.5 9
PDB header:fluorescent protein
Chain: B: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
45d1k8ib1
not modelled 17.5 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
46d1oxda_
not modelled 17.5 6
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
47c5eo9A_
not modelled 17.4 9
PDB header:cell adhesion
Chain: A: PDB Molecule:dpr6, isoform c;
PDBTitle: crystal structure of the complex of dpr6 domain 1 bound to dip-alpha2 domain 1+2
48c1dmlG_
not modelled 17.4 23
PDB header:dna binding protein/transferase
Chain: G: PDB Molecule:dna polymerase processivity factor;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
49d1gtta1
not modelled 17.0 15
Fold:FAH
Superfamily:FAH
Family:FAH
50d1kp5a_
not modelled 17.0 9
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
51c3akoG_
not modelled 17.0 6
PDB header:fluorescent protein
Chain: G: PDB Molecule:venus;
PDBTitle: crystal structure of the reassembled venus
52c4uidB_
not modelled 16.8 17
PDB header:sugar binding protein
Chain: B: PDB Molecule:surface layer protein;
PDBTitle: crystal structure of the s-layer protein sbsc domains 4 and 5
53c4csbA_
not modelled 16.6 20
PDB header:unknown function
Chain: A: PDB Molecule:virulence associated protein vapd;
PDBTitle: structure of the virulence-associated protein vapd from the2 intracellular pathogen rhodococcus equi.
54c5ltrA_
not modelled 16.5 9
PDB header:fluorescent protein
Chain: A: PDB Molecule:mneongreen;
PDBTitle: structure of the yellow-green fluorescent protein mneongreen from2 branchiostoma lanceolatum at the near physiological ph 8.0
55c3evpA_
not modelled 16.4 6
PDB header:signaling protein
Chain: A: PDB Molecule:green fluorescent protein,green fluorescent protein;
PDBTitle: crystal structure of circular-permutated egfp
56c6m9yD_
not modelled 16.3 11
PDB header:fluorescent protein
Chain: D: PDB Molecule:fluorescent protein lanfp6a;
PDBTitle: x-ray structure of branchiostoma floridae fluorescent protein lanfp6a
57c4dkmH_
not modelled 16.3 9
PDB header:fluorescent protein
Chain: H: PDB Molecule:amphioxus green fluorescent protein, gfpc1a;
PDBTitle: crystal structure of amphioxus gfpc1a
58d1igyb4
not modelled 16.2 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
59c3evrA_
not modelled 16.1 6
PDB header:signaling protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: crystal structure of calcium bound monomeric gcamp2
60c4f3qA_
not modelled 16.1 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
61c4kw3A_
not modelled 16.0 17
PDB header:viral protein
Chain: A: PDB Molecule:ns1;
PDBTitle: crystal structure of the non-structural protein 1 n-terminal origin-2 recognition/nickase domain from the emerging human bocavirus
62c2otbB_
not modelled 15.8 9
PDB header:fluorescent protein
Chain: B: PDB Molecule:gfp-like fluorescent chromoprotein cfp484;
PDBTitle: crystal structure of a monomeric cyan fluorescent protein in the2 fluorescent state
63d1h6ra_
not modelled 15.7 6
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
64d1klub1
not modelled 15.6 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
65d1xqma_
not modelled 15.6 14
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
66d3d85d2
not modelled 15.3 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
67c2zmwC_
not modelled 15.1 17
PDB header:luminescent protein
Chain: C: PDB Molecule:fluorescent protein;
PDBTitle: crystal structure of monomeric kusabira-orange (mko), orange-emitting2 gfp-like protein, at ph 6.0
68c4cv7A_
not modelled 15.0 24
PDB header:toxin
Chain: A: PDB Molecule:virulence associated protein vapb;
PDBTitle: crystal structure of rhodococcus equi vapb
69d1fngb1
not modelled 14.8 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
70d1mywa_
not modelled 14.8 6
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
71c3nfjE_
not modelled 14.6 15
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: recognition of peptide-mhc by a v-delta/v-beta tcr
72c3pwnE_
not modelled 14.6 15
PDB header:protein binding
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: human class i mhc hla-a2 in complex with the hud (g2l) peptide variant
73c3pwnB_
not modelled 14.6 15
PDB header:protein binding
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: human class i mhc hla-a2 in complex with the hud (g2l) peptide variant
74c3ox8E_
not modelled 14.6 15
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of hla a*02:03 bound to hbv core 18-27
75c3mrgB_
not modelled 14.6 15
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcv2 ns3-1073-1081 nonapeptide
76c3cglE_
not modelled 14.5 14
PDB header:fluorescent protein
Chain: E: PDB Molecule:gfp-like fluorescent chromoprotein dsfp483;
PDBTitle: crystal structure and raman studies of dsfp483, a cyan fluorescent2 protein from discosoma striata
77d1vcaa1
not modelled 14.4 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
78d1ypze2
not modelled 14.3 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
79c1vcaA_
not modelled 14.3 16
PDB header:cell adhesion protein
Chain: A: PDB Molecule:human vascular cell adhesion molecule-1;
PDBTitle: crystal structure of an integrin-binding fragment of2 vascular cell adhesion molecule-1 at 1.8 angstroms3 resolution
80c1yt5A_
not modelled 14.2 14
PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima
81c4jeoB_
not modelled 14.2 6
PDB header:fluorescent protein
Chain: B: PDB Molecule:red fluorescent protein blfp-r5;
PDBTitle: crystal structure of red fluorescent protein lanrfpdam exposed to2 prolonged x-ray irradiation
82c4e9lA_
not modelled 14.2 11
PDB header:cell adhesion
Chain: A: PDB Molecule:attaching and effacing protein, pathogenesis factor;
PDBTitle: fdec, a novel broadly conserved escherichia coli adhesin eliciting2 protection against urinary tract infections
83c2dd9C_
not modelled 14.1 6
PDB header:luminescent protein
Chain: C: PDB Molecule:green fluorescent protein;
PDBTitle: a mutant of gfp-like protein from chiridius poppei
84d1ggxa_
not modelled 14.1 11
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
85c2a48A_
not modelled 14.0 20
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like fluorescent chromoprotein amfp486;
PDBTitle: crystal structure of amfp486 e150q
86d2g50a1
not modelled 13.9 10
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
87c2qhrL_
not modelled 13.9 17
PDB header:immune system/viral protein
Chain: L: PDB Molecule:13f6-1-2 fab fragment v lambda x light chain;
PDBTitle: crystal structure of the 13f6-1-2 fab fragment bound to its ebola2 virus glycoprotein peptide epitope.
88c1yzwB_
not modelled 13.9 17
PDB header:luminescent protein
Chain: B: PDB Molecule:gfp-like non-fluorescent chromoprotein;
PDBTitle: the 2.1a crystal structure of the far-red fluorescent2 protein hcred: inherent conformational flexibility of the3 chromophore
89d1un7a1
not modelled 13.8 24
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
90c4xbiA_
not modelled 13.6 9
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein, putative,green fluorescent protein;
PDBTitle: structure of a malarial protein involved in proteostasis
91c4ohsB_
not modelled 13.6 17
PDB header:fluorescent protein
Chain: B: PDB Molecule:far-red fluorescent protein aq143;
PDBTitle: the structure of a far-red fluorescent protein, aq143
92c4nj7P_
not modelled 13.5 25
PDB header:protein binding
Chain: P: PDB Molecule:auxin response factor 7;
PDBTitle: pb1 domain of atarf7 - semet derivative
93d1e0ta1
not modelled 13.5 19
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
94c6dxuA_
not modelled 13.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
95c2iouC_
not modelled 13.3 25
PDB header:viral protein/membrane protein
Chain: C: PDB Molecule:major tropism determinant p1;
PDBTitle: major tropism determinant p1 (mtd-p1) variant complexed with2 bordetella brochiseptica virulence factor pertactin extracellular3 domain (prn-e).
96c1z0zC_
not modelled 13.2 17
PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
97d1z0sa1
not modelled 13.2 17
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
98c3ai5A_
not modelled 13.1 6
PDB header:fluorescent protein, transcription
Chain: A: PDB Molecule:yeast enhanced green fluorescent protein,ubiquitin;
PDBTitle: crystal structure of yeast enhanced green fluorescent protein-2 ubiquitin fusion protein
99c2iyjA_
not modelled 13.0 11
PDB header:isomerase
Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc;
PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below