1 c6n6jB_ 
 
100.0 
48 
PDB header: rna binding protein/rnaChain:  B: PDB Molecule: rna exonuclease 2 homolog,small fragment nuclease;PDBTitle:  human rexo2 bound to paa
2 c6n6dA_ 
 
100.0 
43 
PDB header: rna binding protein/rnaChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  vibrio cholerae oligoribonuclease bound to pag
3 c5cy4C_ 
 
100.0 
42 
PDB header: oxidoreductaseChain:  C: PDB Molecule: oligoribonuclease;PDBTitle:  crystal structure of an oligoribonuclease from acinetobacter baumannii
4 c6a4dA_ 
 
100.0 
41 
PDB header: hydrolaseChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
5 c3tr8A_ 
 
100.0 
41 
PDB header: hydrolaseChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  structure of an oligoribonuclease (orn) from coxiella burnetii
6 d1j9aa_ 
 
100.0 
42 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
7 d2igia1 
 
100.0 
46 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
8 c2gbzA_ 
 
100.0 
45 
PDB header: hydrolaseChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
9 c5z9xA_ 
 
100.0 
19 
PDB header: plant protein/rnaChain:  A: PDB Molecule: small rna degrading nuclease 1;PDBTitle:  arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
10 d2qxfa1 
 
100.0 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
11 d1y97a1 
 
100.0 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
12 c4rg8A_ 
 
100.0 
24 
PDB header: hydrolaseChain:  A: PDB Molecule: exonuclease i;PDBTitle:  structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
13 d3b6oa1 
 
100.0 
12 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
14 c3u6fA_ 
 
99.9 
11 
PDB header: hydrolase/dnaChain:  A: PDB Molecule: three prime repair exonuclease 1;PDBTitle:  mouse trex1 d200n mutant
15 c5fkvD_ 
 
99.9 
21 
PDB header: transferaseChain:  D: PDB Molecule: dna polymerase iii epsilon;PDBTitle:  cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
16 d1w0ha_ 
 
99.9 
14 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
17 d2guia1 
 
99.9 
23 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
18 d2f96a1 
 
99.9 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
19 c3cm6A_ 
 
99.9 
14 
PDB header: hydrolase, apoptosisChain:  A: PDB Molecule: cell death-related nuclease 4;PDBTitle:  crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
20 d1wlja_ 
 
99.9 
21 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
21 c2p1jB_ 
 
not modelled 
99.9 
16 
PDB header: transferaseChain:  B: PDB Molecule: dna polymerase iii polc-type;PDBTitle:  crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
22 c2xriA_ 
 
not modelled 
99.9 
9 
PDB header: hydrolaseChain:  A: PDB Molecule: eri1 exoribonuclease 3;PDBTitle:  crystal structure of human eri1 exoribonuclease 3
23 c1zbhA_ 
 
not modelled 
99.9 
14 
PDB header: hydrolase/rnaChain:  A: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle:  3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
24 c1zbuB_ 
 
not modelled 
99.9 
16 
PDB header: hydrolaseChain:  B: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle:  crystal structure of full-length 3'-exonuclease
25 c5l80B_ 
 
not modelled 
99.9 
12 
PDB header: rna binding proteinChain:  B: PDB Molecule: maternal protein exuperantia,maternal protein exuperantia;PDBTitle:  structure of exuperantia exo-like and sam-like domains
26 c4fzxC_ 
 
not modelled 
99.9 
16 
PDB header: hydrolase/dnaChain:  C: PDB Molecule: exodeoxyribonuclease 10;PDBTitle:  exonuclease x in complex with 3' overhanging duplex dna
27 c4wbqA_ 
 
not modelled 
99.8 
13 
PDB header: rna binding proteinChain:  A: PDB Molecule: qde-2-interacting protein;PDBTitle:  crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
28 c2is3B_ 
 
not modelled 
99.8 
14 
PDB header: hydrolaseChain:  B: PDB Molecule: ribonuclease t;PDBTitle:  crystal structure of escherichia coli rnase t
29 c4czwA_ 
 
not modelled 
99.8 
17 
PDB header: gene regulationChain:  A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle:  structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
30 c4q8jA_ 
 
not modelled 
99.7 
18 
PDB header: hydrolaseChain:  A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle:  structure of the saccharomyces cerevisiae pan2-pan3 core complex
31 c6r5kA_ 
 
not modelled 
99.6 
17 
PDB header: rna binding proteinChain:  A: PDB Molecule: pan2-pan3 deadenylation complex catalytic subunit pan2;PDBTitle:  cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
32 c4hecB_ 
 
not modelled 
99.3 
15 
PDB header: unknown functionChain:  B: PDB Molecule: putative uncharacterized protein;PDBTitle:  crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
33 d1uoca_ 
 
not modelled 
99.1 
14 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease
34 c2kzzA_ 
 
not modelled 
98.9 
19 
PDB header: transferase/dnaChain:  A: PDB Molecule: protein (dna polymerase i);PDBTitle:  klenow fragment with normal substrate and zinc only
35 d1kfsa1 
 
not modelled 
98.9 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
36 d2d5ra1 
 
not modelled 
98.9 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease
37 c2p51A_ 
 
not modelled 
98.9 
20 
PDB header: hydrolase, gene regulationChain:  A: PDB Molecule: spcc18.06c protein;PDBTitle:  crystal structure of the s. pombe pop2p deadenylation subunit
38 c4gmjB_ 
 
not modelled 
98.8 
15 
PDB header: rna binding proteinChain:  B: PDB Molecule: ccr4-not transcription complex subunit 7;PDBTitle:  structure of human not1 mif4g domain co-crystallized with caf1
39 d1x9ma1 
 
not modelled 
98.7 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
40 c3d45B_ 
 
not modelled 
98.5 
17 
PDB header: hydrolaseChain:  B: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle:  crystal structure of mouse parn in complex with m7gpppg
41 c2a1sC_ 
 
not modelled 
98.5 
17 
PDB header: hydrolaseChain:  C: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle:  crystal structure of native parn nuclease domain
42 c1tk0A_ 
 
not modelled 
98.5 
15 
PDB header: transferase/electron transport/dnaChain:  A: PDB Molecule: dna polymerase;PDBTitle:  t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
43 c5dkuB_ 
 
not modelled 
98.4 
12 
PDB header: transferaseChain:  B: PDB Molecule: prex dna polymerase;PDBTitle:  c-terminal his tagged appol exonuclease mutant
44 c1njzA_ 
 
not modelled 
98.3 
8 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase i;PDBTitle:  cytosine-thymine mismatch at the polymerase active site
45 d2hhva1 
 
not modelled 
98.2 
10 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
46 c4x0pB_ 
 
not modelled 
98.1 
12 
PDB header: transferase/dnaChain:  B: PDB Molecule: dna polymerase theta;PDBTitle:  ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
47 c2gv9B_ 
 
not modelled 
98.1 
18 
PDB header: transferaseChain:  B: PDB Molecule: dna polymerase;PDBTitle:  crystal structure of the herpes simplex virus type 1 dna polymerase
48 c2gv9A_ 
 
not modelled 
98.1 
19 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase;PDBTitle:  crystal structure of the herpes simplex virus type 1 dna polymerase
49 c5okiA_ 
 
not modelled 
98.0 
14 
PDB header: replicationChain:  A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle:  crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
50 d1wn7a1 
 
not modelled 
98.0 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
51 c3iayA_ 
 
not modelled 
98.0 
16 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle:  ternary complex of dna polymerase delta
52 d1tgoa1 
 
not modelled 
97.9 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
53 c6fwkB_ 
 
not modelled 
97.9 
17 
PDB header: dna binding proteinChain:  B: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle:  the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
54 c4m8oA_ 
 
not modelled 
97.9 
12 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle:  ternary complex of dna polymerase epsilon with an incoming datp
55 d1d5aa1 
 
not modelled 
97.8 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
56 d1qhta1 
 
not modelled 
97.7 
12 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
57 c5exrG_ 
 
not modelled 
97.5 
15 
PDB header: replicationChain:  G: PDB Molecule: dna polymerase alpha catalytic subunit;PDBTitle:  crystal structure of human primosome
58 c2vwkA_ 
 
not modelled 
97.5 
12 
PDB header: dna replicationChain:  A: PDB Molecule: dna polymerase;PDBTitle:  uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
59 c5zo4B_ 
 
not modelled 
97.4 
20 
PDB header: hydrolaseChain:  B: PDB Molecule: putative 3'-5' exonuclease family protein;PDBTitle:  inactive state of the nuclease
60 d1ih7a1 
 
not modelled 
97.3 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
61 c5mdnB_ 
 
not modelled 
97.3 
20 
PDB header: transferaseChain:  B: PDB Molecule: dna polymerase;PDBTitle:  structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
62 c5c0xK_ 
 
not modelled 
97.2 
15 
PDB header: hydrolase/rnaChain:  K: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle:  structure of a 12-subunit nuclear exosome complex bound to structured2 rna
63 c1d5aA_ 
 
not modelled 
97.2 
16 
PDB header: transferaseChain:  A: PDB Molecule: protein (dna polymerase);PDBTitle:  crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
64 c4fydA_ 
 
not modelled 
97.2 
8 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase alpha catalytic subunit a;PDBTitle:  crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
65 d1noya_ 
 
not modelled 
97.1 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
66 d1s5ja1 
 
not modelled 
97.1 
19 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
67 c5n2hA_ 
 
not modelled 
97.1 
6 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase;PDBTitle:  structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
68 c4xviA_ 
 
not modelled 
97.0 
12 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase nu;PDBTitle:  binary complex of human polymerase nu and dna with the finger domain2 ajar
69 d1q8ia1 
 
not modelled 
97.0 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
70 c4q5vA_ 
 
not modelled 
96.9 
14 
PDB header: transferase/dna/rnaChain:  A: PDB Molecule: dna polymerase alpha catalytic subunit;PDBTitle:  crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin
71 d1yt3a3 
 
not modelled 
96.9 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
72 c1s5jA_ 
 
not modelled 
96.8 
21 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase i;PDBTitle:  insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
73 c2e6mA_ 
 
not modelled 
96.7 
13 
PDB header: hydrolaseChain:  A: PDB Molecule: werner syndrome atp-dependent helicase homolog;PDBTitle:  structure of mouse werner exonuclease domain
74 c2dtuA_ 
 
not modelled 
96.5 
13 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase;PDBTitle:  crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
75 c6k1dB_ 
 
not modelled 
96.5 
16 
PDB header: hydrolaseChain:  B: PDB Molecule: exonuclease 3'-5' domain-containing protein 2;PDBTitle:  crystal structure of exd2 exonuclease domain soaked in mn and gmp
76 c1yt3A_ 
 
not modelled 
96.5 
14 
PDB header: hydrolase,translationChain:  A: PDB Molecule: ribonuclease d;PDBTitle:  crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
77 c4ktqA_ 
 
not modelled 
96.3 
14 
PDB header: transferase/dnaChain:  A: PDB Molecule: protein (large fragment of dna polymerase i);PDBTitle:  binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
78 c5af0B_ 
 
not modelled 
96.1 
13 
PDB header: unknown proteinChain:  B: PDB Molecule: maelstrom;PDBTitle:  mael domain from bombyx mori maelstrom
79 c4oo1J_ 
 
not modelled 
95.4 
17 
PDB header: hydrolase/rnaChain:  J: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle:  structure of an rrp6-rna exosome complex bound to poly(a) rna
80 c1q8iA_ 
 
not modelled 
94.9 
15 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase ii;PDBTitle:  crystal structure of escherichia coli dna polymerase ii
81 d2hbka2 
 
not modelled 
94.8 
19 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
82 c4ybgA_ 
 
not modelled 
94.4 
13 
PDB header: hydrolaseChain:  A: PDB Molecule: protein maelstrom;PDBTitle:  crystal structure of the mael domain of drosophila melanogaster2 maelstrom
83 c3cymA_ 
 
not modelled 
91.5 
13 
PDB header: structural genomics, unknown functionChain:  A: PDB Molecule: uncharacterized protein bad_0989;PDBTitle:  crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
84 c3ikmD_ 
 
not modelled 
91.0 
27 
PDB header: transferaseChain:  D: PDB Molecule: dna polymerase subunit gamma-1;PDBTitle:  crystal structure of human mitochondrial dna polymerase holoenzyme
85 c4ztuA_ 
 
not modelled 
90.0 
27 
PDB header: dna binding protein/dnaChain:  A: PDB Molecule: dna polymerase subunit gamma-1;PDBTitle:  structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
86 c4nlbA_ 
 
not modelled 
78.2 
13 
PDB header: hydrolaseChain:  A: PDB Molecule: ribosomal rna processing protein 6;PDBTitle:  crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
87 d2py5a1 
 
not modelled 
70.4 
17 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
88 c2hbkA_ 
 
not modelled 
70.3 
18 
PDB header: hydrolase, gene regulationChain:  A: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle:  structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
89 c5c0wK_ 
 
not modelled 
65.5 
17 
PDB header: hydrolase/rnaChain:  K: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle:  structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
90 d1vk0a_ 
 
not modelled 
58.6 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
91 c3sahA_ 
 
not modelled 
55.0 
14 
PDB header: hydrolaseChain:  A: PDB Molecule: exosome component 10;PDBTitle:  crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
92 c2ex3I_ 
 
not modelled 
38.7 
19 
PDB header: transferase/replicationChain:  I: PDB Molecule: dna polymerase;PDBTitle:  bacteriophage phi29 dna polymerase bound to terminal protein
93 c5v5fA_ 
 
not modelled 
18.2 
11 
PDB header: transferaseChain:  A: PDB Molecule: at3g11770;PDBTitle:  crystal structure of rice1 (pnt2)
94 d3bzka5 
 
not modelled 
12.9 
25 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: Tex RuvX-like domain-like
95 c3bdvB_ 
 
not modelled 
11.7 
19 
PDB header: hydrolaseChain:  B: PDB Molecule: uncharacterized protein duf1234;PDBTitle:  crystal structure of a putative yden-like hydrolase (eca3091) from2 pectobacterium atrosepticum scri1043 at 1.66 a resolution
96 d1hpla2 
 
not modelled 
8.9 
11 
Fold: alpha/beta-HydrolasesSuperfamily: alpha/beta-HydrolasesFamily: Pancreatic lipase, N-terminal domain
97 d1ji8a_ 
 
not modelled 
8.9 
13 
Fold: DsrC, the gamma subunit of dissimilatory sulfite reductaseSuperfamily: DsrC, the gamma subunit of dissimilatory sulfite reductaseFamily: DsrC, the gamma subunit of dissimilatory sulfite reductase
98 c4mf4F_ 
 
not modelled 
8.9 
31 
PDB header: lyaseChain:  F: PDB Molecule: hpch/hpai aldolase/citrate lyase family protein;PDBTitle:  crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
99 d2v4jc1 
 
not modelled 
8.5 
18 
Fold: DsrC, the gamma subunit of dissimilatory sulfite reductaseSuperfamily: DsrC, the gamma subunit of dissimilatory sulfite reductaseFamily: DsrC, the gamma subunit of dissimilatory sulfite reductase