Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2511_(orn)_2827167_2827814
DateWed Aug 7 12:50:14 BST 2019
Unique Job ID0aafa4f60f249d1a
SequenceVQDELVWIDC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.534 Y:36.230 Z:44.430
Model (left) based on template c6n6jB_
Top template information
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
Confidence and coverage
Confidence:100.0% Coverage: 82%
177 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6n6jB_



100.0 48
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
2c6n6dA_



100.0 43
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: vibrio cholerae oligoribonuclease bound to pag
3c5cy4C_



100.0 42
PDB header:oxidoreductase
Chain: C: PDB Molecule:oligoribonuclease;
PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
4c6a4dA_



100.0 41
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
5c3tr8A_



100.0 41
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
6d1j9aa_



100.0 42
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
7d2igia1



100.0 46
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
8c2gbzA_



100.0 45
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
9c5z9xA_



100.0 19
PDB header:plant protein/rna
Chain: A: PDB Molecule:small rna degrading nuclease 1;
PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
10d2qxfa1



100.0 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
11d1y97a1



100.0 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
12c4rg8A_



100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease i;
PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
13d3b6oa1



100.0 12
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
14c3u6fA_



99.9 11
PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
15c5fkvD_



99.9 21
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
16d1w0ha_



99.9 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
17d2guia1



99.9 23
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
18d2f96a1



99.9 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
19c3cm6A_



99.9 14
PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
20d1wlja_



99.9 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
21c2p1jB_



not modelled 99.9 16
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
22c2xriA_



not modelled 99.9 9
PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
23c1zbhA_



not modelled 99.9 14
PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
24c1zbuB_



not modelled 99.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
25c5l80B_



not modelled 99.9 12
PDB header:rna binding protein
Chain: B: PDB Molecule:maternal protein exuperantia,maternal protein exuperantia;
PDBTitle: structure of exuperantia exo-like and sam-like domains
26c4fzxC_



not modelled 99.9 16
PDB header:hydrolase/dna
Chain: C: PDB Molecule:exodeoxyribonuclease 10;
PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
27c4wbqA_



not modelled 99.8 13
PDB header:rna binding protein
Chain: A: PDB Molecule:qde-2-interacting protein;
PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
28c2is3B_



not modelled 99.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
29c4czwA_



not modelled 99.8 17
PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
30c4q8jA_



not modelled 99.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
31c6r5kA_



not modelled 99.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
32c4hecB_



not modelled 99.3 15
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
33d1uoca_



not modelled 99.1 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
34c2kzzA_



not modelled 98.9 19
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
35d1kfsa1



not modelled 98.9 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
36d2d5ra1



not modelled 98.9 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
37c2p51A_



not modelled 98.9 20
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:spcc18.06c protein;
PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
38c4gmjB_



not modelled 98.8 15
PDB header:rna binding protein
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
39d1x9ma1



not modelled 98.7 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
40c3d45B_



not modelled 98.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of mouse parn in complex with m7gpppg
41c2a1sC_



not modelled 98.5 17
PDB header:hydrolase
Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of native parn nuclease domain
42c1tk0A_



not modelled 98.5 15
PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
43c5dkuB_



not modelled 98.4 12
PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
44c1njzA_



not modelled 98.3 8
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
45d2hhva1



not modelled 98.2 10
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
46c4x0pB_



not modelled 98.1 12
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase theta;
PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
47c2gv9B_



not modelled 98.1 18
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
48c2gv9A_



not modelled 98.1 19
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
49c5okiA_



not modelled 98.0 14
PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
50d1wn7a1



not modelled 98.0 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
51c3iayA_



not modelled 98.0 16
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
52d1tgoa1



not modelled 97.9 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
53c6fwkB_



not modelled 97.9 17
PDB header:dna binding protein
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
54c4m8oA_



not modelled 97.9 12
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp
55d1d5aa1



not modelled 97.8 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
56d1qhta1



not modelled 97.7 12
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
57c5exrG_



not modelled 97.5 15
PDB header:replication
Chain: G: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of human primosome
58c2vwkA_



not modelled 97.5 12
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
59c5zo4B_



not modelled 97.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative 3'-5' exonuclease family protein;
PDBTitle: inactive state of the nuclease
60d1ih7a1



not modelled 97.3 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
61c5mdnB_



not modelled 97.3 20
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
62c5c0xK_



not modelled 97.2 15
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
63c1d5aA_



not modelled 97.2 16
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
64c4fydA_



not modelled 97.2 8
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
65d1noya_



not modelled 97.1 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
66d1s5ja1



not modelled 97.1 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
67c5n2hA_



not modelled 97.1 6
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
68c4xviA_



not modelled 97.0 12
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
69d1q8ia1



not modelled 97.0 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
70c4q5vA_



not modelled 96.9 14
PDB header:transferase/dna/rna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin
71d1yt3a3



not modelled 96.9 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
72c1s5jA_



not modelled 96.8 21
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
73c2e6mA_



not modelled 96.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
74c2dtuA_



not modelled 96.5 13
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
75c6k1dB_



not modelled 96.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
76c1yt3A_



not modelled 96.5 14
PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
77c4ktqA_



not modelled 96.3 14
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (large fragment of dna polymerase i);
PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
78c5af0B_



not modelled 96.1 13
PDB header:unknown protein
Chain: B: PDB Molecule:maelstrom;
PDBTitle: mael domain from bombyx mori maelstrom
79c4oo1J_



not modelled 95.4 17
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
80c1q8iA_



not modelled 94.9 15
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
81d2hbka2



not modelled 94.8 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
82c4ybgA_



not modelled 94.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:protein maelstrom;
PDBTitle: crystal structure of the mael domain of drosophila melanogaster2 maelstrom
83c3cymA_



not modelled 91.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
84c3ikmD_



not modelled 91.0 27
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase holoenzyme
85c4ztuA_



not modelled 90.0 27
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
86c4nlbA_



not modelled 78.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribosomal rna processing protein 6;
PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
87d2py5a1



not modelled 70.4 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
88c2hbkA_



not modelled 70.3 18
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
89c5c0wK_



not modelled 65.5 17
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
90d1vk0a_



not modelled 58.6 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
91c3sahA_



not modelled 55.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:exosome component 10;
PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
92c2ex3I_



not modelled 38.7 19
PDB header:transferase/replication
Chain: I: PDB Molecule:dna polymerase;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
93c5v5fA_



not modelled 18.2 11
PDB header:transferase
Chain: A: PDB Molecule:at3g11770;
PDBTitle: crystal structure of rice1 (pnt2)
94d3bzka5



not modelled 12.9 25
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
95c3bdvB_



not modelled 11.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein duf1234;
PDBTitle: crystal structure of a putative yden-like hydrolase (eca3091) from2 pectobacterium atrosepticum scri1043 at 1.66 a resolution
96d1hpla2



not modelled 8.9 11
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
97d1ji8a_



not modelled 8.9 13
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
98c4mf4F_



not modelled 8.9 31
PDB header:lyase
Chain: F: PDB Molecule:hpch/hpai aldolase/citrate lyase family protein;
PDBTitle: crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
99d2v4jc1



not modelled 8.5 18
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase

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