Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2513_(-)_2830171_2830593
DateWed Aug 7 12:50:14 BST 2019
Unique Job ID93d074a6af54a711
SequenceVDDIAAFKLD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.774 Y:40.831 Z:29.701
Model (left) based on template c4n2gA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
Confidence and coverage
Confidence: 21.4% Coverage: 36%
51 residues ( 36% of your sequence) have been modelled with 21.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4n2gA_



21.4 35
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
2d1qkia2



15.2 53
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
3c5hp5A_



13.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-1;
PDBTitle: srtucture of human peptidylarginine deiminase type i (pad1)
4d1p9pa_



13.3 30
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
5c2dexX_



11.2 33
PDB header:hydrolase
Chain: X: PDB Molecule:protein-arginine deiminase type iv;
PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17
6c3iwpK_



10.9 28
PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc
7c4r9xB_



10.6 25
PDB header:metal transport
Chain: B: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of putative copper homeostasis protein cutc from2 bacillus anthracis
8c3imoC_



10.0 22
PDB header:unknown function
Chain: C: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of vibrio cholerae. integron2 cassette protein vch_cass14
9d1oy5a_



10.0 31
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
10c4e9iB_



9.9 53
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
11c4lgvA_



9.7 47
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
12c3ujjP_



9.7 64
PDB header:immune system
Chain: P: PDB Molecule:gp120;
PDBTitle: crystal structure of anti-hiv-1 v3 fab 4025 in complex with con a2 peptide
13c1oy5B_



9.3 31
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus
14c5hi8B_



8.7 15
PDB header:lyase
Chain: B: PDB Molecule:antenna protein;
PDBTitle: structure of t-type phycobiliprotein lyase cpet from prochlorococcus2 phage p-hm1
15d2dexx3



8.3 31
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
16c3ffrA_



8.1 13
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
17c3gb3B_



7.6 20
PDB header:fluorescent protein
Chain: B: PDB Molecule:killerred;
PDBTitle: x-ray structure of genetically encoded photosensitizer killerred in2 native form
18c6hegA_



7.5 41
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase hrpb;
PDBTitle: crystal structure of escherichia coli deah/rha helicase hrpb
19c5dkuB_



7.1 25
PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
20c3ky7A_



6.9 30
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252
21c5o60U_



not modelled 6.9 13
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l23;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
22c3a0mF_



not modelled 6.2 73
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
23c4k1cB_



not modelled 5.9 32
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
24c1ynuA_



not modelled 5.9 25
PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
25c2rv9A_



not modelled 5.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:glucanase;
PDBTitle: solution structure of chitosan-binding module 1 derived from2 chitosanase/glucanase from paenibacillus sp. ik-5
26d1h9aa2



not modelled 5.5 24
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
27c4kppA_



not modelled 5.5 24
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
28d1cm3a_



not modelled 5.4 27
Fold:HPr-like
Superfamily:HPr-like
Family:HPr-like
29c3le1B_



not modelled 5.3 20
PDB header:transferase
Chain: B: PDB Molecule:phosphotransferase system, hpr-related proteins;
PDBTitle: crystal structure of apohpr monomer from thermoanaerobacter2 tengcongensis
30d2ga1a1



not modelled 5.3 65
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Alr1493-like

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