Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2514c_(-)_2830887_2831348
DateWed Aug 7 12:50:14 BST 2019
Unique Job IDac1069c579a90532
SequenceVLYSFDTSAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.642 Y:39.246 Z:39.437
Model (left) based on template d2h1ca1
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.7% Coverage: 82%
126 residues ( 82% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2h1ca1



99.7 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2d1v96a1



99.7 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3d1y82a1



99.7 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c3zvkC_



99.7 17
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
5c6nklA_



99.6 15
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
6c3h87B_



99.6 14
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
7c4chgC_



99.6 17
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
8c3tndC_



99.6 15
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
9c5sv2A_



99.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
10c5l6mC_



99.5 24
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
11c3dboB_



99.5 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
12c3ix7A_



99.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
13c6a7vG_



99.3 18
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
14c4xgrG_



99.1 11
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
15c5ywwA_



98.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
16c5f4hF_



98.8 18
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
17c3i8oA_



98.8 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
18c2fe1A_



98.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
19d2fe1a1



98.7 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c2lcqA_



98.6 18
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
21c5x3tD_



not modelled 98.6 20
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
22c2hwwC_



not modelled 98.4 13
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
23c5wzfB_



not modelled 98.3 12
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
24d1o4wa_



not modelled 98.3 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c1v8pK_



not modelled 97.6 15
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
26d1v8pa_



not modelled 97.3 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
27c6g5iy_



not modelled 96.7 18
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
28c5jpqd_



not modelled 96.6 15
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 96.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c2hwyB_



not modelled 93.3 13
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c4mj7B_



not modelled 89.2 9
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
32d1w8ia_



not modelled 81.5 10
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
33c3v32B_



not modelled 64.5 30
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c6md3F_



not modelled 64.3 15
PDB header:hydrolase/rna
Chain: F: PDB Molecule:rrp44p homologue;
PDBTitle: structure of t. brucei rrp44 pin domain
35c3v33A_



not modelled 62.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
36c5mq9A_



not modelled 54.7 20
PDB header:translation
Chain: A: PDB Molecule:uncharacterized protein yacp;
PDBTitle: crystal structure of rae1 (yacp) from bacillus subtilis (w164l mutant)
37c6d6rK_



not modelled 50.9 19
PDB header:hydrolase
Chain: K: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
38d1rlga_



not modelled 40.5 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
39c3zddA_



not modelled 39.5 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
40c3izcH_



not modelled 33.2 17
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein rpl8 (l7ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
41c5xyiM_



not modelled 30.8 7
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l7ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
42c2zkrf_



not modelled 30.3 21
PDB header:ribosomal protein/rna
Chain: F: PDB Molecule:rna expansion segment es7 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
43c1s1iG_



not modelled 28.4 17
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
44c3u5iG_



not modelled 27.5 17
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b
45c2xznU_



not modelled 27.0 7
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein l7ae containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
46c3v7eB_



not modelled 27.0 10
PDB header:ribosomal protein/rna
Chain: B: PDB Molecule:ribosome-associated protein l7ae-like;
PDBTitle: crystal structure of ybxf bound to the sam-i riboswitch aptamer
47c3j39G_



not modelled 25.8 21
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
48d1g7sa3



not modelled 25.6 7
Fold:Initiation factor IF2/eIF5b, domain 3
Superfamily:Initiation factor IF2/eIF5b, domain 3
Family:Initiation factor IF2/eIF5b, domain 3
49d1w41a1



not modelled 25.2 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
50c4a1eF_



not modelled 23.3 17
PDB header:ribosome
Chain: F: PDB Molecule:rpl7a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
51c1z9bA_



not modelled 23.3 12
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of the c1-subdomain of bacillus2 stearothermophilus translation initiation factor if2
52c3cpqB_



not modelled 23.2 10
PDB header:ribosomal protein
Chain: B: PDB Molecule:50s ribosomal protein l30e;
PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044)
53d1xbia1



not modelled 23.0 13
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
54d2bo1a1



not modelled 23.0 16
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
55c2mdtA_



not modelled 22.0 16
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
56c3zf7x_



not modelled 21.4 14
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l23a;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
57c5xxuM_



not modelled 20.8 17
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein es12;
PDBTitle: small subunit of toxoplasma gondii ribosome
58d1t0kb_



not modelled 20.6 9
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
59c2zkr6_



not modelled 19.7 5
PDB header:ribosomal protein/rna
Chain: 6: PDB Molecule:60s ribosomal protein l30e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
60c3v7qB_



not modelled 18.5 19
PDB header:rna binding protein
Chain: B: PDB Molecule:probable ribosomal protein ylxq;
PDBTitle: crystal structure of b. subtilis ylxq at 1.55 a resolution
61c3j61G_



not modelled 18.3 17
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8e;
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
62c3zf7g_



not modelled 16.9 12
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
63c3on1A_



not modelled 16.9 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2414 protein;
PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c
64c2z5bB_



not modelled 16.3 32
PDB header:chaperone
Chain: B: PDB Molecule:uncharacterized protein ylr021w;
PDBTitle: crystal structure of a novel chaperone complex for yeast2 20s proteasome assembly
65c2z5cB_



not modelled 16.2 32
PDB header:chaperone/hydrolase
Chain: B: PDB Molecule:uncharacterized protein ylr021w;
PDBTitle: crystal structure of a novel chaperone complex for yeast 20s2 proteasome assembly
66c3j38M_



not modelled 14.6 13
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s12;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
67c5udwB_



not modelled 14.4 18
PDB header:transferase
Chain: B: PDB Molecule:lactate racemization operon protein lare;
PDBTitle: lare, a sulfur transferase involved in synthesis of the cofactor for2 lactate racemase, in complex with nickel
68c3iz5H_



not modelled 14.3 31
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
69c2w69B_



not modelled 14.3 24
PDB header:transcription
Chain: B: PDB Molecule:polymerase acidic protein;
PDBTitle: influenza polymerase fragment
70c4a1dG_



not modelled 13.8 8
PDB header:ribosome
Chain: G: PDB Molecule:rpl30;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
71d2gtad1



not modelled 13.4 11
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
72c3j21Z_



not modelled 13.3 7
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l30e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
73c3kxeD_



not modelled 12.4 13
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
74c3j3bG_



not modelled 12.2 38
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
75c4qamB_



not modelled 11.8 30
PDB header:signaling protein
Chain: B: PDB Molecule:x-linked retinitis pigmentosa gtpase regulator-interacting
PDBTitle: crystal structure of the rpgr rcc1-like domain in complex with the2 rpgr-interacting domain of rpgrip1
76c2x9qA_



not modelled 11.6 11
PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
77d1knxa1



not modelled 10.3 23
Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:HPr kinase/phoshatase HprK N-terminal domain
78c3oqhB_



not modelled 9.5 7
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein yvmc;
PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic
79c5cegC_



not modelled 9.2 25
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
80c4n3gA_



not modelled 9.2 14
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5b-like protein,
PDBTitle: crystal structure of eukaryotic translation initiation factor eif5b2 (870-1116) from chaetomium thermophilum, domains iii and iv
81d2ipqx1



not modelled 8.9 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:STY4665 C-terminal domain-like
82c3j3aM_



not modelled 8.9 7
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s12;
PDBTitle: structure of the human 40s ribosomal proteins
83c5udtD_



not modelled 8.6 13
PDB header:transferase
Chain: D: PDB Molecule:lactate racemization operon protein lare;
PDBTitle: lare, a sulfur transferase involved in synthesis of the cofactor for2 lactate racemase, in complex with amp
84c2zbtB_



not modelled 8.4 13
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from thermus2 thermophilus hb8
85c3femB_



not modelled 8.2 22
PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae
86c3nfiB_



not modelled 7.9 21
PDB header:dna binding protein, transcription
Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49
87d3pmga3



not modelled 7.9 11
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
88c5d0nA_



not modelled 7.8 26
PDB header:transferase
Chain: A: PDB Molecule:pyruvate, phosphate dikinase regulatory protein,
PDBTitle: crystal structure of maize pdrp bound with amp
89c2nv2U_



not modelled 7.5 22
PDB header:lyase/transferase
Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis
90c2lbwA_



not modelled 7.3 17
PDB header:rna binding protein
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2;
PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant
91c3dy0B_



not modelled 7.0 11
PDB header:blood clotting, hydrolase inhibitor
Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved pci bound to heparin
92c4v19S_



not modelled 6.8 7
PDB header:ribosome
Chain: S: PDB Molecule:mitoribosomal protein ul18m, mrpl18;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
93c6j6qF_



not modelled 6.7 9
PDB header:splicing
Chain: F: PDB Molecule:splicing factor yju2;
PDBTitle: cryo-em structure of the yeast b*-b2 complex at an average resolution2 of 3.7 angstrom
94c1lq8H_



not modelled 6.7 11
PDB header:blood clotting
Chain: H: PDB Molecule:plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved protein c inhibitor
95d1cmwa2



not modelled 6.4 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
96d2isya1



not modelled 6.3 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
97c5h1pB_



not modelled 6.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crispr-associated protein
98c2exxB_



not modelled 6.2 24
PDB header:unknown function
Chain: B: PDB Molecule:hscarg protein;
PDBTitle: crystal structure of hscarg from homo sapiens in complex with nadp
99c2e2zA_



not modelled 6.2 14
PDB header:protein transport, chaperone regulator
Chain: A: PDB Molecule:tim15;
PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70

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