Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2517c_(-)_2833520_2833771
DateWed Aug 7 12:50:15 BST 2019
Unique Job ID1d190edfd8c15b49
SequenceVNSAIIKIAK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.196 Y:24.682 Z:28.097
Model (left) based on template d2ewoa1
Top template information
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
Confidence and coverage
Confidence: 38.7% Coverage: 45%
37 residues ( 45% of your sequence) have been modelled with 38.7% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2ewoa1



38.7 14
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
2d1vkpa_



37.4 16
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
3d2cmua1



33.8 14
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
4c2l6pA_



29.3 24
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
5c2jerG_



23.9 22
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
6d1zbra1



22.7 15
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
7d1xkna_



22.3 27
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
8d1ylxa1



21.9 33
Fold:N domain of copper amine oxidase-like
Superfamily:GK1464-like
Family:GK1464-like
9d2jera1



21.2 22
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
10c4ytgA_



21.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:peptidylarginine deiminase;
PDBTitle: crystal structure of porphyromonas gingivalis peptidylarginine2 deiminase (ppad) mutant c351a in complex with dipeptide met-arg.
11d1upsa2



20.1 53
Fold:beta-Trefoil
Superfamily:Ricin B-like lectins
Family:GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
12c3tquD_



17.9 22
PDB header:hydrolase
Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase;
PDBTitle: structure of a ham1 protein from coxiella burnetii
13c2qvtA_



17.8 100
PDB header:unknown function
Chain: A: PDB Molecule:avrl567-d;
PDBTitle: structure of melampsora lini avirulence protein, avrl567-d
14c2pr7A_



17.3 53
PDB header:hydrolase
Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family;
PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
15c2l6nA_



17.1 26
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
16c3dntB_



16.0 25
PDB header:transferase
Chain: B: PDB Molecule:protein hipa;
PDBTitle: structures of mdt proteins
17c2vsaA_



15.5 35
PDB header:toxin
Chain: A: PDB Molecule:mosquitocidal toxin;
PDBTitle: structure and mode of action of a mosquitocidal holotoxin
18c6eujC_



14.6 23
PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucanase;
PDBTitle: the gh43, beta 1,3 galactosidase, bt0265
19d2hg6a1



14.2 40
Fold:PA1123-like
Superfamily:PA1123-like
Family:PA1123-like
20c3phzA_



13.9 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:ricin b-related lectin;
PDBTitle: crystal structure analysis of polyporus squamosus lectin bound to2 human-type influenza-binding epitope neu5aca2-6galb1-4glcnac
21c1yr2A_



not modelled 13.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl oligopeptidase;
PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity
22c2k8vA_



not modelled 12.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin domain-containing protein 12;
PDBTitle: solution structure of oxidised erp18
23d2f2fa1



not modelled 11.7 15
Fold:beta-Trefoil
Superfamily:Ricin B-like lectins
Family:Ricin B-like
24c6b2wB_



not modelled 11.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:putative peptidyl-arginine deiminase family protein;
PDBTitle: c. jejuni c315s agmatine deiminase with substrate bound
25d2qrda1



not modelled 11.2 20
Fold:TBP-like
Superfamily:KA1-like
Family:Ssp2 C-terminal domain-like
26c3bc9A_



not modelled 10.5 29
PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose
27d1zcaa1



not modelled 10.5 24
Fold:Transducin (alpha subunit), insertion domain
Superfamily:Transducin (alpha subunit), insertion domain
Family:Transducin (alpha subunit), insertion domain
28d1z0xa2



not modelled 10.3 29
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
29c3qrzC_



not modelled 9.8 44
PDB header:hormone receptor
Chain: C: PDB Molecule:abscisic acid receptor pyl5;
PDBTitle: crystal structure of native abscisic acid receptor pyl5 at 2.62 angstrom
30d1k7ka_



not modelled 9.6 17
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
31d1dvpa1



not modelled 9.5 28
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
32c5uqyB_



not modelled 9.2 30
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope glycoprotein gp2;
PDBTitle: crystal structure of marburg virus gp in complex with the human2 survivor antibody mr78
33d2v8qa1



not modelled 9.1 20
Fold:TBP-like
Superfamily:KA1-like
Family:Ssp2 C-terminal domain-like
34d2bcjq1



not modelled 9.1 14
Fold:Transducin (alpha subunit), insertion domain
Superfamily:Transducin (alpha subunit), insertion domain
Family:Transducin (alpha subunit), insertion domain
35c2jwlB_



not modelled 8.5 23
PDB header:membrane protein
Chain: B: PDB Molecule:protein tolr;
PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data
36c5ld1D_



not modelled 8.4 22
PDB header:transferase
Chain: D: PDB Molecule:polyphosphate:amp phosphotransferase;
PDBTitle: crystal structure of polyphosphate kinase from meiothermus ruber bound2 to atp
37d2f99a1



not modelled 8.2 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
38c1x5bA_



not modelled 8.1 27
PDB header:protein binding
Chain: A: PDB Molecule:signal transducing adaptor molecule 2;
PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2
39c1ybiA_



not modelled 8.1 12
PDB header:toxin
Chain: A: PDB Molecule:non-toxin haemagglutinin ha34;
PDBTitle: crystal structure of ha33a, a neurotoxin-associated protein2 from clostridium botulinum type a
40c4bz0A_



not modelled 8.0 29
PDB header:motor protein
Chain: A: PDB Molecule:putative type iv pilus biosynthesis protein;
PDBTitle: structural characterization using sulfur-sad of the cytoplasmic2 domain of burkholderia pseudomallei pilo2bp, an actin-like3 protein component of a type ivb r64-derivative pilus machinery.
41c3plwA_



not modelled 7.8 56
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
42c2dxcG_



not modelled 7.3 14
PDB header:hydrolase
Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha;
PDBTitle: recombinant thiocyanate hydrolase, fully-matured form
43c3gjxE_



not modelled 7.3 35
PDB header:protein transport
Chain: E: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of the nuclear export complex crm1-2 snurportin1-rangtp
44d1o9ja_



not modelled 7.1 16
Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
45c4owlA_



not modelled 7.0 17
PDB header:toxin
Chain: A: PDB Molecule:cytolysin;
PDBTitle: crystal structure of the vibrio vulnificus hemolysin/cytolysin beta-2 trefoil lectin with n-acetyl-d-lactosamine bound
46c6jx3B_



not modelled 6.9 21
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
47c5xg5A_



not modelled 6.9 15
PDB header:de novo protein
Chain: A: PDB Molecule:mitsuba-1;
PDBTitle: crystal structure of mitsuba-1 with bound nacgal
48d1juqa_



not modelled 6.9 29
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
49c2cpmA_



not modelled 6.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sperm-associated antigen 7;
PDBTitle: solution structure of the r3h domain of human sperm-2 associated antigen 7
50c1sr4A_



not modelled 6.8 14
PDB header:toxin
Chain: A: PDB Molecule:cytolethal distending toxin subunit a;
PDBTitle: crystal structure of the haemophilus ducreyi cytolethal2 distending toxin
51d1sr4a_



not modelled 6.8 14
Fold:beta-Trefoil
Superfamily:Ricin B-like lectins
Family:Ricin B-like
52c1ij2C_



not modelled 6.8 45
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
53c1ij3C_



not modelled 6.8 45
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position
54c1rb1B_



not modelled 6.8 45
PDB header:dna binding protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
55c1rb1A_



not modelled 6.8 45
PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
56c3k7zB_



not modelled 6.8 45
PDB header:dna binding protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
57c3k7zA_



not modelled 6.8 45
PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
58c6au0A_



not modelled 6.7 24
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:polyphosphate:amp phosphotransferase;
PDBTitle: crystal structure of ppk2 (class iii) in complex with bisphosphonate2 inhibitor (2-((3,5-dichlorophenyl)amino)ethane-1,1-diyl)diphosphonic3 acid
59c1dvpA_



not modelled 6.7 29
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
60c1ij2B_



not modelled 6.6 45
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
61c3gb8B_



not modelled 6.5 33
PDB header:transport protein
Chain: B: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of crm1/snurportin-1 complex
62c4eagA_



not modelled 6.5 20
PDB header:transferase
Chain: A: PDB Molecule:eg:132e8.2 protein;
PDBTitle: co-crystal structure of an chimeric ampk core with atp
63c6dbbA_



not modelled 6.5 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aldehyde dehydrogenase family protein;
PDBTitle: crystal structure of a putative aldehyde dehydrogenase family protein2 burkholderia cenocepacia j2315 in complex with partially reduced nadh
64d1zcba1



not modelled 6.5 25
Fold:Transducin (alpha subunit), insertion domain
Superfamily:Transducin (alpha subunit), insertion domain
Family:Transducin (alpha subunit), insertion domain
65d1q3ma_



not modelled 6.4 71
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
66c1rb6C_



not modelled 6.4 45
PDB header:dna binding protein
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as n16a2 tetragonal form
67c4as2D_



not modelled 6.1 24
PDB header:hydrolase
Chain: D: PDB Molecule:phosphorylcholine phosphatase;
PDBTitle: pseudomonas aeruginosa phosphorylcholine phosphatase. monoclinic form
68c4eajA_



not modelled 5.9 20
PDB header:transferase
Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1;
PDBTitle: co-crystal of ampk core with amp soaked with atp
69c5lnk2_



not modelled 5.8 29
PDB header:oxidoreductase
Chain: 2: PDB Molecule:mitochondrial complex i, 24 kda subunit;
PDBTitle: entire ovine respiratory complex i
70c1ij3B_



not modelled 5.6 45
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position
71c1mszA_



not modelled 5.6 30
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: solution structure of the r3h domain from human smubp-2
72d1msza_



not modelled 5.6 30
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
73c2q83A_



not modelled 5.6 12
PDB header:transferase
Chain: A: PDB Molecule:ytaa protein;
PDBTitle: crystal structure of ytaa (2635576) from bacillus subtilis at 2.50 a2 resolution
74d1mxga1



not modelled 5.6 21
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
75c2cceB_



not modelled 5.5 58
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: parallel configuration of pli e20s
76c3auoB_



not modelled 5.5 30
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
77d1rj9a1



not modelled 5.5 70
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
78c5by4A_



not modelled 5.5 29
PDB header:protein transport
Chain: A: PDB Molecule:protein tolr;
PDBTitle: structure and function of the escherichia coli tol-pal stator protein2 tolr
79c6g1cV_



not modelled 5.4 21
PDB header:antitoxin
Chain: V: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the n-terminal domain of burkholderia2 pseudomallei antitoxin hicb
80d1v7mv_



not modelled 5.4 35
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
81c4bnqA_



not modelled 5.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:non-canonical purine ntp pyrophosphatase;
PDBTitle: the structure of the staphylococcus aureus ham1 protein
82d1lvaa3



not modelled 5.4 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
83c1ce0B_



not modelled 5.3 55
PDB header:hiv-1 envelope protein
Chain: B: PDB Molecule:protein (leucine zipper model h38-p1);
PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model
84d1v29b_



not modelled 5.2 36
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
85c3j21M_



not modelled 5.1 31
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)

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