Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2520c_(-)_2837398_2837625
DateWed Aug 7 12:50:15 BST 2019
Unique Job ID96943a3d90c5c4db
SequenceVVDRDPNTIK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.910 Y:13.446 Z:24.707
Model (left) based on template c4fi5A_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of the n-terminal domain of hantaan virus strain 76-2 118 nucleoprotein
Confidence and coverage
Confidence: 33.7% Coverage: 20%
15 residues ( 20% of your sequence) have been modelled with 33.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4fi5A_



33.7 27
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of the n-terminal domain of hantaan virus strain 76-2 118 nucleoprotein
2d1mrza1



33.3 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:ATP-dependent riboflavin kinase-like
3c3bnwA_



30.9 47
PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase, putative;
PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei
4d1n08a_



30.3 12
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:ATP-dependent riboflavin kinase-like
5c3ff5B_



28.7 13
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
6c4pu4C_



17.1 21
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
7d1nb9a_



16.8 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:ATP-dependent riboflavin kinase-like
8c4cc9C_



15.6 50
PDB header:protein binding
Chain: C: PDB Molecule:deoxynucleoside triphosphate triphosphohydrolase samhd1;
PDBTitle: crystal structure of human samhd1 (amino acid residues 582-626) bound2 to vpx isolated from sooty mangabey and human dcaf1 (amino acid3 residues 1058-1396)
9c4xngC_



14.2 44
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein mg218.1;
PDBTitle: central domain of mycoplasma genitalium terminal organelle protein2 mg491
10c6adqP_



13.3 32
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
11c5ikfA_



12.8 25
PDB header:transcription
Chain: A: PDB Molecule:chromatin remodeling factor mit1;
PDBTitle: crystal structure of the c-terminal domain of the mit1 nucleosome2 remodeler in complex with clr1
12c5aonB_



12.6 18
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
13c2x0kB_



11.9 21
PDB header:transferase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf;
PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes
14c3hd7A_



11.8 18
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
15c1sfcI_



10.0 20
PDB header:transport protein
Chain: I: PDB Molecule:protein (synaptobrevin 2);
PDBTitle: neuronal synaptic fusion complex
16d1k1fa_



9.9 13
Fold:Bcr-Abl oncoprotein oligomerization domain
Superfamily:Bcr-Abl oncoprotein oligomerization domain
Family:Bcr-Abl oncoprotein oligomerization domain
17c2kogA_



9.9 18
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
18c2w85A_



9.7 18
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
19c5l87A_



9.4 18
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
20c1n7sA_



9.3 20
PDB header:transport protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: high resolution structure of a truncated neuronal snare complex
21c4z1mI_



not modelled 9.3 44
PDB header:hydrolase
Chain: I: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: bovine f1-atpase inhibited by three copies of the inhibitor protein2 if1 crystallised in the presence of thiophosphate.
22c4tt3I_



not modelled 9.3 44
PDB header:hydrolase
Chain: I: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: the pathway of binding of the intrinsically disordered mitochondrial2 inhibitor protein to f1-atpase
23c4zigB_



not modelled 9.2 19
PDB header:apoptosis
Chain: B: PDB Molecule:bh3-interacting domain death agonist;
PDBTitle: crystal structure of core/latch dimer of bax in complex with2 bidbh3mini
24c2qdqB_



not modelled 9.0 31
PDB header:structural protein
Chain: B: PDB Molecule:talin-1;
PDBTitle: crystal structure of the talin dimerisation domain
25c2v7sA_



not modelled 8.7 30
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
26c5j0lC_



not modelled 8.5 24
PDB header:de novo protein
Chain: C: PDB Molecule:designed protein 3l6hc2_2;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
27c1gl2A_



not modelled 8.5 8
PDB header:membrane protein
Chain: A: PDB Molecule:endobrevin;
PDBTitle: crystal structure of an endosomal snare core complex
28c3vepC_



not modelled 8.1 69
PDB header:membrane protein/transcription
Chain: C: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
29c3vepX_



not modelled 8.1 69
PDB header:membrane protein/transcription
Chain: X: PDB Molecule:uncharacterized protein rv3413c/mt3522;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
30c3j2wE_



not modelled 8.0 30
PDB header:virus
Chain: E: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
31c3j2wH_



not modelled 8.0 30
PDB header:virus
Chain: H: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
32c2myxA_



not modelled 7.2 17
PDB header:ubiquitin-binding protein
Chain: A: PDB Molecule:coupling of ubiquitin conjugation to er degradation protein
PDBTitle: structure of the cue domain of yeast cue1
33d1zkea1



not modelled 7.1 30
Fold:ROP-like
Superfamily:HP1531-like
Family:HP1531-like
34c1t6zB_



not modelled 6.9 24
PDB header:transferase
Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase;
PDBTitle: crystal structure of riboflavin bound tm379
35c3r84F_



not modelled 6.8 31
PDB header:transcription
Chain: F: PDB Molecule:mediator of rna polymerase ii transcription subunit 22;
PDBTitle: structure of the mediator head subcomplex med11/22
36c4k08A_



not modelled 6.7 17
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis sensory transducer;
PDBTitle: periplasmic sensor domain of chemotaxis protein, adeh_3718
37c1hf9B_



not modelled 6.7 13
PDB header:atpase inhibitor
Chain: B: PDB Molecule:atpase inhibitor (mitochondrial);
PDBTitle: c-terminal coiled-coil domain from bovine if1
38c5z2wB_



not modelled 6.4 29
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein ftsb;
PDBTitle: crystal structure of the bacterial cell division protein ftsq and ftsb
39c2npsA_



not modelled 6.2 20
PDB header:transport protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 4;
PDBTitle: crystal structure of the early endosomal snare complex
40c5i7cA_



not modelled 6.1 21
PDB header:structural protein
Chain: A: PDB Molecule:centrosomin;
PDBTitle: centrosomin-motif 2 (cm2) domain of drosophila melanogaster2 centrosomin (cnn)
41c1zv8B_



not modelled 6.0 40
PDB header:viral protein
Chain: B: PDB Molecule:e2 glycoprotein;
PDBTitle: a structure-based mechanism of sars virus membrane fusion
42c1avoA_



not modelled 5.9 24
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
43c3bbzA_



not modelled 5.9 36
PDB header:viral protein, replication
Chain: A: PDB Molecule:p protein;
PDBTitle: structure of the nucleocapsid-binding domain from the mumps2 virus phosphoprotein
44c2v51E_



not modelled 5.8 38
PDB header:structural protein/contractile protein
Chain: E: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
45c2v51F_



not modelled 5.8 38
PDB header:structural protein/contractile protein
Chain: F: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
46d1wgla_



not modelled 5.7 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
47c4c0xA_



not modelled 5.6 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: the crystal strucuture of ppazor in complex with anthraquinone-2-2 sulfonate
48d1t6aa_



not modelled 5.6 20
Fold:TBP-like
Superfamily:Rbstp2229 protein
Family:Rbstp2229 protein
49c4gqmA_



not modelled 5.3 7
PDB header:unknown function
Chain: A: PDB Molecule:ct009;
PDBTitle: crystal structure of a helix-turn-helix containing hypothetical2 protein (ct009) from chlamydia trachomatis in a sub-domain swap3 conformation
50c5xauD_



not modelled 5.2 11
PDB header:cell adhesion
Chain: D: PDB Molecule:laminin subunit alpha-5;
PDBTitle: crystal structure of integrin binding fragment of laminin-511

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Transmembrane helix prediction 

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