Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2525c_(-)_2849862_2850584
DateWed Aug 7 12:50:15 BST 2019
Unique Job ID265b96c5e65809f3
SequenceMSVSRRDVLK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.227 Y:40.849 Z:43.811
Model (left) based on template c4pmnB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:tat-secreted protein rv2525c;
PDBTitle: crystal structure of the mycobacterium tuberculosis tat-secreted2 protein rv2525c in complex with mes (monoclinic crystal form i)
Confidence and coverage
Confidence:100.0% Coverage: 86%
207 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4pmnB_



100.0 99
PDB header:unknown function
Chain: B: PDB Molecule:tat-secreted protein rv2525c;
PDBTitle: crystal structure of the mycobacterium tuberculosis tat-secreted2 protein rv2525c in complex with mes (monoclinic crystal form i)
2c1sfsA_



100.0 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: 1.07 a crystal structure of an uncharacterized b. stearothermophilus2 protein
3d1sfsa_



100.0 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
4d1jfxa_



97.8 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
5c2nw0B_



97.7 16
PDB header:hydrolase
Chain: B: PDB Molecule:plyb;
PDBTitle: crystal structure of a lysin
6c4krtA_



97.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:autolytic lysozyme;
PDBTitle: x-ray structure of endolysin from clostridium perfringens phage2 phism101
7c2wagA_



97.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme, putative;
PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis.
8c5a6sA_



97.5 17
PDB header:structural protein
Chain: A: PDB Molecule:endolysin;
PDBTitle: crystal structure of the ctp1l endolysin reveals how its2 activity is regulated by a secondary translation product
9c4jz5A_



97.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:gp26;
PDBTitle: high-resolution structure of catalytic domain of endolysin ply40 from2 bacteriophage p40 of listeria monocytogenes
10c2x8rE_



97.2 18
PDB header:hydrolase
Chain: E: PDB Molecule:glycosyl hydrolase;
PDBTitle: the structure of a family gh25 lysozyme from aspergillus2 fumigatus
11c4ff5A_



96.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase 25;
PDBTitle: structure basis of a novel virulence factor ghip a glycosyl hydrolase2 25 of streptococcus pneumoniae participating in host cell invasion
12c2wwcA_



96.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:1,4-beta-n-acetylmuramidase;
PDBTitle: 3d-structure of the modular autolysin lytc from2 streptococcus pneumoniae in complex with synthetic3 peptidoglycan ligand
13c5jipB_



95.2 15
PDB header:hydrolase
Chain: B: PDB Molecule:cortical-lytic enzyme;
PDBTitle: crystal structure of the clostridium perfringens spore cortex lytic2 enzyme slem
14d2j8ga2



86.7 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
15c2j8fA_



72.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of the modular cpl-1 endolysin complexed with a2 peptidoglycan analogue (e94q mutant in complex with a disaccharide-3 pentapeptide)
16c2pq4B_



57.7 32
PDB header:chaperone/oxidoreductase
Chain: B: PDB Molecule:periplasmic nitrate reductase precursor;
PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide
17d1i60a_



56.7 11
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
18c5tnvA_



48.7 17
PDB header:isomerase
Chain: A: PDB Molecule:ap endonuclease, family protein 2;
PDBTitle: crystal structure of a xylose isomerase-like tim barrel protein from2 mycobacterium smegmatis in complex with magnesium
19c1p84E_



47.5 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
20c2fynO_



46.3 36
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
21c3dx5A_



not modelled 43.7 11
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
22d1bxca_



not modelled 42.3 16
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
23d1k77a_



not modelled 42.1 13
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Hypothetical protein YgbM (EC1530)
24c2e76D_



not modelled 41.3 12
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
25c3s6dA_



not modelled 37.0 16
PDB header:isomerase
Chain: A: PDB Molecule:putative triosephosphate isomerase;
PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis
26d2q02a1



not modelled 37.0 7
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
27d2j85a1



not modelled 36.9 21
Fold:STIV B116-like
Superfamily:STIV B116-like
Family:STIV B116-like
28c6cwhB_



not modelled 35.9 21
PDB header:sugar binding protein
Chain: B: PDB Molecule:surface (s-) layer glycoprotein;
PDBTitle: crystal structure of spaa-slh in complex with 4,6-pyr-beta-d-mannacome2 (p1)
29c2fyuE_



not modelled 33.2 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
30c1vioA_



not modelled 32.7 20
PDB header:lyase
Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridylate synthase
31c3ju2A_



not modelled 31.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein smc04130;
PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021
32d1tz9a_



not modelled 31.3 17
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
33c6fo2R_



not modelled 29.9 16
PDB header:membrane protein
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cryoem structure of bovine cytochrome bc1 with no ligand bound
34c3ogrA_



not modelled 28.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose
35c2qw5B_



not modelled 25.9 15
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase-like tim barrel;
PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution
36d2g0wa1



not modelled 25.4 10
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
37c3c85D_



not modelled 25.4 15
PDB header:transport protein
Chain: D: PDB Molecule:putative glutathione-regulated potassium-efflux system
PDBTitle: crystal structure of trka domain of putative glutathione-regulated2 potassium-efflux kefb from vibrio parahaemolyticus
38c1xc6A_



not modelled 25.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose
39d1ltqa1



not modelled 25.1 17
Fold:HAD-like
Superfamily:HAD-like
Family:phosphatase domain of polynucleotide kinase
40d1bxba_



not modelled 23.7 16
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
41c5ak1A_



not modelled 23.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: the penta-modular cellulosomal arabinoxylanase ctxyl5a2 structure as revealed by x-ray crystallography
42c3cqkB_



not modelled 23.1 8
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate
43c6daoB_



not modelled 21.5 17
PDB header:lyase
Chain: B: PDB Molecule:trans-o-hydroxybenzylidenepyruvate hydratase-aldolase;
PDBTitle: nahe wt selenomethionine
44c4wcxC_



not modelled 20.5 11
PDB header:lyase
Chain: C: PDB Molecule:biotin and thiamin synthesis associated;
PDBTitle: crystal structure of hydg: a maturase of the [fefe]-hydrogenase
45d1xima_



not modelled 19.8 17
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
46c2ogfD_



not modelled 19.0 19
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein mj0408;
PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372
47c4kqxB_



not modelled 18.8 15
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: B: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: mutant slackia exigua kari ddv in complex with nad and an inhibitor
48c5jp6A_



not modelled 18.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:putative polysaccharide deacetylase;
PDBTitle: bdellovibrio bacteriovorus peptidoglycan deacetylase bd3279
49d1qt1a_



not modelled 18.5 19
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
50d1xlma_



not modelled 17.3 16
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
51c3t7vA_



not modelled 16.9 8
PDB header:transferase
Chain: A: PDB Molecule:methylornithine synthase pylb;
PDBTitle: crystal structure of methylornithine synthase (pylb)
52c5hmqE_



not modelled 14.9 13
PDB header:lyase
Chain: E: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: xylose isomerase-like tim barrel/4-hydroxyphenylpyruvate dioxygenase2 fusion protein
53d2obpa1



not modelled 14.3 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ReutB4095-like
54c2fhoA_



not modelled 14.2 18
PDB header:rna binding protein
Chain: A: PDB Molecule:spliceosomal protein sf3b155;
PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155
55c4nz3A_



not modelled 13.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:deacetylase da1;
PDBTitle: structure of vibrio cholerae chitin de-n-acetylase in complex with2 di(n-acetyl-d-glucosamine) (cbs) in p 21 21 21
56d2ceva_



not modelled 13.5 16
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
57c3kwsB_



not modelled 13.5 12
PDB header:isomerase
Chain: B: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution
58c3vylB_



not modelled 12.9 13
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose 3-epimerase;
PDBTitle: structure of l-ribulose 3-epimerase
59c3cnyA_



not modelled 12.4 18
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
60c1uytC_



not modelled 12.1 10
PDB header:transferase
Chain: C: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: acetyl-coa carboxylase carboxyltransferase domain
61d1mhhe_



not modelled 11.9 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
62c5zeeA_



not modelled 11.6 12
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:arginase;
PDBTitle: crystal structure of entamoeba histolytica arginase in complex with2 n(omega)-hydroxy-l-arginine (noha) at 1.74 a
63c5l0lB_



not modelled 11.4 26
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg0439
64c4rtbA_



not modelled 10.8 15
PDB header:lyase
Chain: A: PDB Molecule:hydg protein;
PDBTitle: x-ray structure of the fefe-hydrogenase maturase hydg from2 carboxydothermus hydrogenoformans
65d2aeba1



not modelled 10.5 19
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
66d1jmla_



not modelled 10.5 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
67c2f9jP_



not modelled 9.7 18
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
68d1yx1a1



not modelled 9.5 14
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:KguE-like
69c4rl4B_



not modelled 9.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase-2;
PDBTitle: crystal structure of gtp cyclohydrolase ii from helicobacter pylori2 26695
70c1gthD_



not modelled 9.3 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary complex with2 nadph and 5-iodouracil
71c3nipB_



not modelled 9.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:3-guanidinopropionase;
PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane
72d1vioa1



not modelled 9.3 20
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase RsuA/RluD
73c2qx2A_



not modelled 9.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sex pheromone staph-cam373;
PDBTitle: structure of the c-terminal domain of sex pheromone staph-cam3732 precursor from staphylococcus aureus
74d2glka1



not modelled 9.1 18
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
75d1b25a2



not modelled 8.9 21
Fold:Aldehyde ferredoxin oxidoreductase, N-terminal domain
Superfamily:Aldehyde ferredoxin oxidoreductase, N-terminal domain
Family:Aldehyde ferredoxin oxidoreductase, N-terminal domain
76d2gp4a1



not modelled 8.9 12
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
77d2ptla_



not modelled 8.8 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
78c1mk2B_



not modelled 8.8 29
PDB header:transcription
Chain: B: PDB Molecule:madh-interacting protein;
PDBTitle: smad3 sbd complex
79d1hz6a_



not modelled 8.7 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
80d1k52a_



not modelled 8.6 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
81c3pywA_



not modelled 8.5 8
PDB header:structural protein
Chain: A: PDB Molecule:s-layer protein sap;
PDBTitle: the structure of the slh domain from b. anthracis surface array2 protein at 1.8a
82d1mo0a_



not modelled 8.4 20
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
83c2htfA_



not modelled 8.3 50
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: the solution structure of the brct domain from human2 polymerase reveals homology with the tdt brct domain
84c4nvtD_



not modelled 8.2 19
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from brucella2 melitensis
85c3bdkB_



not modelled 8.0 23
PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
86c4hn3C_



not modelled 7.9 18
PDB header:signaling protein
Chain: C: PDB Molecule:lmo1757 protein;
PDBTitle: the crystal structure of a sex pheromone precursor (lmo1757) from2 listeria monocytogenes egd-e
87c3obeB_



not modelled 7.6 11
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution
88d7reqb2



not modelled 7.6 29
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
89d2cyga1



not modelled 7.5 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
90d1n55a_



not modelled 7.5 17
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
91c4b8nC_



not modelled 7.3 6
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome b5-host origin;
PDBTitle: cytochrome b5 of ostreococcus tauri virus 2
92d1oqya2



not modelled 7.2 33
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
93c2eivH_



not modelled 7.1 17
PDB header:hydrolase
Chain: H: PDB Molecule:arginase;
PDBTitle: crystal structure of the arginase from thermus thermophilus
94d2a0ma1



not modelled 6.9 19
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
95c2dp3A_



not modelled 6.9 17
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia
96c3krsB_



not modelled 6.8 23
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution
97d1suxa_



not modelled 6.7 15
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
98c4z3wB_



not modelled 6.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:benzoyl-coa reductase, putative;
PDBTitle: active site complex bambc of benzoyl coenzyme a reductase in complex2 with 1,5 dienoyl-coa
99d1xp3a1



not modelled 6.6 13
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV

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