Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2530A_(-)_2854693_2854917
DateWed Aug 7 12:50:16 BST 2019
Unique Job ID898af746a6114af0
SequenceMRTTLQIDDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.986 Y:23.322 Z:24.650
Model (left) based on template d2bsqe1
Top template information
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
Confidence and coverage
Confidence: 89.9% Coverage: 58%
43 residues ( 58% of your sequence) have been modelled with 89.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bsqe1
89.9 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
2c2h1oH_
89.3 16
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
3c1q5vB_
87.2 25
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
4c3kk4B_
87.1 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
5c2bj3D_
86.5 19
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
6c5x3tA_
85.0 25
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
7d2bj7a1
81.1 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
8c2ca9B_
77.1 16
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
9c2k5jB_
75.9 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
10c6a7vU_
69.3 24
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
11d2hzaa1
68.5 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
12d2hzab1
62.5 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
13d1xrxa1
54.9 35
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
14c1xrxD_
54.9 35
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
15d1xd7a_
47.5 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
16c4a1qB_
42.7 26
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park
17c4aaiB_
42.7 26
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: thermostable protein from hyperthermophilic virus ssv-rh
18c2k29A_
38.5 13
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
19c2d86A_
37.1 25
PDB header:signaling protein, protein binding
Chain: A: PDB Molecule:vav-3 protein;
PDBTitle: solution structure of the ch domain from human vav-3 protein
20c1t01B_
32.2 42
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:talin 1;
PDBTitle: vinculin complexed with the vbs1 helix from talin
21d1xrsa_
not modelled 29.0 20
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:D-lysine 5,6-aminomutase alpha subunit, KamD
22c3h87D_
not modelled 28.5 32
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
23c1syqB_
not modelled 28.4 42
PDB header:cell adhesion
Chain: B: PDB Molecule:talin 1;
PDBTitle: human vinculin head domain vh1, residues 1-258, in complex with human2 talin's vinculin binding site 1, residues 607-636
24c3lwfD_
not modelled 22.5 25
PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution
25d1ro0a_
not modelled 18.3 17
Fold:Prim-pol domain
Superfamily:Prim-pol domain
Family:Bifunctional DNA primase/polymerase N-terminal domain
26c5htlA_
not modelled 17.9 24
PDB header:biosynthetic protein
Chain: A: PDB Molecule:msha biogenesis protein mshe;
PDBTitle: structure of mshe with cdg
27c3t8tA_
not modelled 17.2 23
PDB header:unknown function
Chain: A: PDB Molecule:staphylococcus aureus cymr (oxidized form);
PDBTitle: crystal structure of staphylococcus aureus cymr oxidized form
28c3fmtF_
not modelled 16.2 19
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
29c6hsdB_
not modelled 15.2 25
PDB header:transcription
Chain: B: PDB Molecule:rrf2 family transcriptional regulator;
PDBTitle: crystal structure of the oxidized form of the transcription regulator2 rsrr
30c3m8jA_
not modelled 15.1 22
PDB header:transcription
Chain: A: PDB Molecule:focb protein;
PDBTitle: crystal structure of e.coli focb at 1.4 a resolution
31c4hv0B_
not modelled 14.8 36
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
32c4cicB_
not modelled 14.7 25
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, badm/rrf2 family;
PDBTitle: t. potens iscr
33c2gpyB_
not modelled 14.5 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
34c2mdvB_
not modelled 12.7 36
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
35c3gzaB_
not modelled 11.6 10
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution
36c3k69A_
not modelled 11.5 14
PDB header:transcription
Chain: A: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution
37d1wuda1
not modelled 10.7 16
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
38c6ejfQ_
not modelled 10.6 15
PDB header:motor protein
Chain: Q: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (apoprotein form)
39c5n07A_
not modelled 10.5 25
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor nsrr;
PDBTitle: structure of the [4fe-4s] form of the no response regulator nsrr
40c3t98C_
not modelled 10.3 24
PDB header:protein transport
Chain: C: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
41c1ea4K_
not modelled 9.8 40
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
42d2cpga_
not modelled 9.8 40
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
43c6f36N_
not modelled 9.8 26
PDB header:proton transport
Chain: N: PDB Molecule:mitochondrial atp synthase subunit asa6;
PDBTitle: polytomella fo model
44c2c4rL_
not modelled 8.8 60
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
45c3m1mA_
not modelled 8.7 20
PDB header:replication
Chain: A: PDB Molecule:orf904;
PDBTitle: crystal structure of the primase-polymerase from sulfolobus islandicus
46c5h2sA_
not modelled 8.6 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:piscidin-4;
PDBTitle: solution structure of tilapia piscidin 4 (tp4) from oreochromis2 niloticus
47c2qezC_
not modelled 8.4 32
PDB header:lyase
Chain: C: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase heavy chain2 (yp_013784.1) from listeria monocytogenes 4b f2365 at 2.15 a3 resolution
48c3t98A_
not modelled 8.2 24
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup54/nup58
49c4dmzB_
not modelled 8.2 13
PDB header:nucleotide-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein peld;
PDBTitle: peld 156-455 from pseudomonas aeruginosa pa14, apo form
50c2y75F_
not modelled 8.1 28
PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator of b.2 subtilis
51c4wv4A_
not modelled 7.9 31
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 10;
PDBTitle: heterodimer of taf8/taf10
52c5x7fA_
not modelled 7.6 36
PDB header:transferase
Chain: A: PDB Molecule:putative o-methyltransferase rv1220c;
PDBTitle: structure of a o-methyltransferase from mycobacterium tuberculosis at2 2.0 resolution
53c4dbgB_
not modelled 7.4 31
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
54c1dl5A_
not modelled 7.0 13
PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
55c2wvsD_
not modelled 7.0 19
PDB header:hydrolase
Chain: D: PDB Molecule:alpha-l-fucosidase;
PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant
56c6orfA_
not modelled 6.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:spgh29;
PDBTitle: crystal structure of spgh29
57c5lvtC_
not modelled 6.7 21
PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding protein hu;
PDBTitle: structure of hu protein from lactococcus lactis
58c1zw2B_
not modelled 6.6 55
PDB header:protein binding
Chain: B: PDB Molecule:talin;
PDBTitle: vinculin head (0-258) in complex with the talin rod2 residues 2345-2369
59c3ntvB_
not modelled 6.5 20
PDB header:transferase
Chain: B: PDB Molecule:mw1564 protein;
PDBTitle: crystal structure of a putative caffeoyl-coa o-methyltransferase from2 staphylococcus aureus
60c6a6xC_
not modelled 6.5 28
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
61c5k9hA_
not modelled 6.4 10
PDB header:hydrolase
Chain: A: PDB Molecule:0940_gh29;
PDBTitle: crystal structure of a glycoside hydrolase 29 family member from an2 unknown rumen bacterium
62c2an7A_
not modelled 6.4 21
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
63c6dy3G_
not modelled 6.4 26
PDB header:hydrolase
Chain: G: PDB Molecule:n-acylethanolamine-hydrolyzing acid amidase alpha-subunit;
PDBTitle: caenorhabditis elegans n-acylethanolamine-hydrolyzing acid amidase2 (naaa) ortholog
64c4hf1B_
not modelled 6.3 18
PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator iscr;
PDBTitle: crystal structure of iscr bound to its promoter
65c3pc3A_
not modelled 6.2 22
PDB header:lyase
Chain: A: PDB Molecule:cg1753, isoform a;
PDBTitle: full length structure of cystathionine beta-synthase from drosophila2 in complex with aminoacrylate
66c2o8xA_
not modelled 6.0 33
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
67c3abqA_
not modelled 5.6 15
PDB header:lyase
Chain: A: PDB Molecule:ethanolamine ammonia-lyase heavy chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and 2-amino-1-propanol
68c2owyB_
not modelled 5.6 20
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination-associated protein rdgc;
PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding
69c4fxeB_
not modelled 5.5 13
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
70c6re86_
not modelled 5.4 26
PDB header:proton transport
Chain: 6: PDB Molecule:mitochondrial atp synthase subunit asa6;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 2d,2 composite map
71c4ni3B_
not modelled 5.3 26
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase gh29;
PDBTitle: crystal structure of gh29 family alpha-l-fucosidase from fusarium2 graminearum in the closed form
72c6gn6A_
not modelled 5.3 24
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-fucosidase;
PDBTitle: alpha-l-fucosidase isoenzyme 1 from paenibacillus thiaminolyticus
73d1s4ka_
not modelled 5.2 7
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like

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