Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2530c_(-)_2854277_2854696
DateWed Aug 7 12:50:16 BST 2019
Unique Job ID90d878129da6bfb8
SequenceVTALLDVNVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.985 Y:37.467 Z:44.901
Model (left) based on template c3zvkC_
Top template information
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
Confidence and coverage
Confidence: 99.8% Coverage: 91%
127 residues ( 91% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3zvkC_



99.8 12
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
2c6a7vG_



99.8 18
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
3c5wzfB_



99.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
4c5x3tD_



99.8 16
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
5c3tndC_



99.8 14
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
6c2fe1A_



99.8 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
7d2fe1a1



99.8 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
8d2h1ca1



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c4chgC_



99.8 12
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
10c5sv2A_



99.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
11c3h87B_



99.8 12
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
12c6nklA_



99.8 15
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
13c4xgrG_



99.7 10
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5l6mC_



99.7 18
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
15d1v96a1



99.6 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c3dboB_



99.6 20
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
17d1w8ia_



99.5 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1y82a1



99.5 10
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



99.3 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



99.3 19
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3ix7A_



not modelled 99.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c3i8oA_



not modelled 99.2 11
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
23d1o4wa_



not modelled 98.8 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5ywwA_



not modelled 98.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c5f4hF_



not modelled 98.6 16
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c2hwwC_



not modelled 98.6 18
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
27c2lcqA_



not modelled 98.2 20
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
28c5jpqd_



not modelled 97.7 15
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 97.6 9
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c4mj7B_



not modelled 97.0 14
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c2hwyB_



not modelled 95.4 17
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c6g5iy_



not modelled 89.8 18
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
33c2mdtA_



not modelled 85.1 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
34c3v33A_



not modelled 73.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35c3v32B_



not modelled 72.2 26
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
36c6d6rK_



not modelled 32.8 13
PDB header:hydrolase
Chain: K: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
37c3zddA_



not modelled 26.2 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
38c3ibzA_



not modelled 14.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative tellurium resistant like protein terd;
PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2)
39c2q4pA_



not modelled 12.3 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein rs21-c6;
PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898
40d2a3qa1



not modelled 12.3 26
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
41c6a68A_



not modelled 12.2 28
PDB header:exocytosis
Chain: A: PDB Molecule:calcium-dependent secretion activator 1;
PDBTitle: the crystal structure of rat calcium-dependent activator protein for2 secretion (caps) damh domain
42d1k1sa1



not modelled 12.1 14
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
43c4g25A_



not modelled 10.2 32
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
44c2kxvA_



not modelled 7.6 13
PDB header:unknown function
Chain: A: PDB Molecule:tellurite resistance protein;
PDBTitle: nmr structure and calcium-binding properties of the tellurite2 resistance protein terd from klebsiella pneumoniae
45c5dizB_



not modelled 6.1 37
PDB header:hydrolase
Chain: B: PDB Molecule:proteinaceous rnase p 2;
PDBTitle: crystal structure of nuclear proteinaceous rnase p 2 (prorp2) from a.2 thaliana
46d1l5ja1



not modelled 5.4 16
Fold:alpha-alpha superhelix
Superfamily:Aconitase B, N-terminal domain
Family:Aconitase B, N-terminal domain

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