Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2533c_(nusB)_2858264_2858734
DateWed Aug 7 12:50:16 BST 2019
Unique Job IDb56a68ede8f792c6
SequenceMSDRKPVRGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.034 Y:48.201 Z:39.619
Model (left) based on template c2jr0A_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein b homolog;
PDBTitle: solution structure of nusb from aquifex aeolicus
Confidence and coverage
Confidence:100.0% Coverage: 91%
142 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2jr0A_



100.0 27
PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein b homolog;
PDBTitle: solution structure of nusb from aquifex aeolicus
2c1eyvA_



100.0 100
PDB header:transcription
Chain: A: PDB Molecule:n-utilizing substance protein b homolog;
PDBTitle: the crystal structure of nusb from mycobacterium tuberculosis
3d1eyva_



100.0 100
Fold:NusB-like
Superfamily:NusB-like
Family:Antitermination factor NusB
4c6ckqA_



100.0 28
PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusb;
PDBTitle: solution structure of the burkholderia thailandensis transcription2 antitermination protein nusb (bth_i1529) - seattle structural3 genomics center for infectious disease target butha.17903.a
5d1tzva_



100.0 32
Fold:NusB-like
Superfamily:NusB-like
Family:Antitermination factor NusB
6d1ey1a_



100.0 31
Fold:NusB-like
Superfamily:NusB-like
Family:Antitermination factor NusB
7d1sqga1



100.0 18
Fold:NusB-like
Superfamily:NusB-like
Family:RmsB N-terminal domain-like
8c1sqgA_



99.9 18
PDB header:transferase
Chain: A: PDB Molecule:sun protein;
PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution
9c2yxlA_



99.8 17
PDB header:transferase
Chain: A: PDB Molecule:450aa long hypothetical fmu protein;
PDBTitle: crystal structure of ph0851
10c5wwrA_



97.0 20
PDB header:transferase/rna
Chain: A: PDB Molecule:putative methyltransferase nsun6;
PDBTitle: crystal structure of human nsun6/trna/sfg
11d1q8ca_



81.0 17
Fold:NusB-like
Superfamily:NusB-like
Family:Hypothetical protein MG027
12c6h02A_



77.8 14
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 23;
PDBTitle: crystal structure of human mediator subunit med23
13d3c8ga1



58.2 11
Fold:MtlR-like
Superfamily:MtlR-like
Family:MtlR-like
14c3ls1A_



43.3 13
PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
15d1xmka1



38.0 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
16c2zc2A_



25.2 13
PDB header:replication
Chain: A: PDB Molecule:dnad-like replication protein;
PDBTitle: crystal structure of dnad-like replication protein from streptococcus2 mutans ua159, gi 24377835, residues 127-199
17c3pubA_



23.3 18
PDB header:unknown function
Chain: A: PDB Molecule:30kda protein;
PDBTitle: crystal structure of the bombyx mori low molecular weight lipoprotein2 7 (bmlp7)
18d2i5ua1



22.0 12
Fold:DnaD domain-like
Superfamily:DnaD domain-like
Family:DnaD domain
19c4pc4B_



21.4 15
PDB header:lipid binding protein
Chain: B: PDB Molecule:30k lipoprotein;
PDBTitle: bombyx mori lipoprotein 6
20c5cw9A_



20.6 56
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed ferredoxin-ferredoxin domain insertion
PDBTitle: crystal structure of de novo designed ferredoxin-ferredoxin domain2 insertion protein
21c4wv4B_



not modelled 16.5 27
PDB header:transcription
Chain: B: PDB Molecule:transcription initiation factor tfiid subunit 8;
PDBTitle: heterodimer of taf8/taf10
22c6hu9r_



not modelled 15.9 13
PDB header:oxidoreductase/electron transport
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
23c2y69R_



not modelled 15.0 27
PDB header:electron transport
Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
24c5ybxA_



not modelled 14.7 38
PDB header:dna binding protein
Chain: A: PDB Molecule:bouquet formation protein 4;
PDBTitle: crystal structure of the n-terminal domain of bqt4 in s.pombe
25c5lskA_



not modelled 13.1 5
PDB header:cell cycle
Chain: A: PDB Molecule:protein mis12 homolog;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
26c2hv8D_



not modelled 12.4 22
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
27c5ycaA_



not modelled 11.1 38
PDB header:membrane protein
Chain: A: PDB Molecule:ubiquitin-like protein smt3,bouquet formation protein 4;
PDBTitle: crystal structure of inner membrane protein bqt4 in complex with lem2
28c6eacC_



not modelled 9.8 27
PDB header:transferase
Chain: C: PDB Molecule:selo;
PDBTitle: pseudomonas syringae selo
29d2ga1a1



not modelled 9.8 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Alr1493-like
30d1sxje1



not modelled 9.4 17
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
31c2ynqD_



not modelled 8.3 14
PDB header:membrane protein
Chain: D: PDB Molecule:essb;
PDBTitle: crystal structure of geobacillus thermodenitrificans essb2 extracellular fragment
32d1qzma_



not modelled 8.3 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
33c2n9rA_



not modelled 8.0 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide padbs1r1;
PDBTitle: novel antimicrobial peptide padbs1r1 designed from the ribosomal2 protein l39e from pyrobaculum aerophilum using bioinformatics
34d1ou9a_



not modelled 7.7 15
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
35d1v54e_



not modelled 7.1 22
Fold:alpha-alpha superhelix
Superfamily:Cytochrome c oxidase subunit E
Family:Cytochrome c oxidase subunit E
36c5ldwd_



not modelled 6.8 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class1
37c5ldxd_



not modelled 6.8 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class3.
38c5lc5d_



not modelled 6.8 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class2
39c6emwD_



not modelled 6.6 21
PDB header:chaperone
Chain: D: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: structure of s.aureus clpc in complex with meca
40c4q9vB_



not modelled 6.4 17
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor alpha-induced protein 8-like protein
PDBTitle: crystal structure of tipe3
41c1yodB_



not modelled 6.1 22
PDB header:de novo protein
Chain: B: PDB Molecule:water-solublized phospholamban;
PDBTitle: crystal structure of a water soluble analog of phospholamban
42c4c9yB_



not modelled 6.0 11
PDB header:cell cycle
Chain: B: PDB Molecule:spindle and kinetochore-associated protein 1;
PDBTitle: structural basis for the microtubule binding of the human2 kinetochore ska complex
43c2vckC_



not modelled 6.0 28
PDB header:oxidoreductase
Chain: C: PDB Molecule:cyanobacterial phycoerythrobilin;
PDBTitle: structure of phycoerythrobilin synthase pebs from the cyanophage p-2 ssm2 in complex with the bound substrate biliverdin ixa
44c4a56A_



not modelled 6.0 19
PDB header:protein transport
Chain: A: PDB Molecule:pullulanase secretion protein puls;
PDBTitle: crystal structure of the type 2 secretion system pilotin2 from klebsiella oxytoca
45c2mu6A_



not modelled 6.0 18
PDB header:peptide binding
Chain: A: PDB Molecule:starp antigen;
PDBTitle: 3d structure determination of starp peptides implicated in p.2 falciparum invasion of hepatic cells
46c5a9qZ_



not modelled 5.9 12
PDB header:transport protein
Chain: Z: PDB Molecule:nuclear pore complex protein nup85;
PDBTitle: human nuclear pore complex
47c6dqwD_



not modelled 5.8 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase, alpha chain;
PDBTitle: flavobacterium johnsoniae class id ribonucleotide reductase alpha2 subuint
48c4auvH_



not modelled 5.8 27
PDB header:apoptosis
Chain: H: PDB Molecule:breast cancer metastasis suppressor 1;
PDBTitle: crystal structure of the brms1 n-terminal region
49d1qbjc_



not modelled 5.8 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
50c6cgmA_



not modelled 5.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: x-ray crystal structure of bacillus subtilis ribonucleotide reductase2 nrde alpha subunit (nucleotide free)
51c3utkA_



not modelled 5.6 24
PDB header:protein transport
Chain: A: PDB Molecule:lipoprotein outs;
PDBTitle: structure of the pilotin of the type ii secretion system
52c1yodA_



not modelled 5.5 22
PDB header:de novo protein
Chain: A: PDB Molecule:water-solublized phospholamban;
PDBTitle: crystal structure of a water soluble analog of phospholamban
53c4auvG_



not modelled 5.5 32
PDB header:apoptosis
Chain: G: PDB Molecule:breast cancer metastasis suppressor 1;
PDBTitle: crystal structure of the brms1 n-terminal region
54d2gxba1



not modelled 5.5 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
55d1qgpa_



not modelled 5.3 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
56c3solA_



not modelled 5.3 24
PDB header:protein transport
Chain: A: PDB Molecule:type ii secretion pathway related protein;
PDBTitle: crystal structure of the type 2 secretion system pilotin gsps
57d1s7za_



not modelled 5.3 21
Fold:Another 3-helical bundle
Superfamily:B-form DNA mimic Ocr
Family:B-form DNA mimic Ocr
58c4p4sB_



not modelled 5.2 21
PDB header:antiviral protein/hydrolase
Chain: B: PDB Molecule:interferon-induced gtp-binding protein mx1;
PDBTitle: gmppcp-bound stalkless-mxa
59c2kebA_



not modelled 5.2 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
60c3w1hB_



not modelled 5.2 11
PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) selenium transferase;
PDBTitle: crystal structure of the selenocysteine synthase sela from aquifex2 aeolicus
61c5tdyD_



not modelled 5.0 20
PDB header:motor protein
Chain: D: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
62c6djqA_



not modelled 5.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:vps1 gtpase-bse;
PDBTitle: vps1 gtpase-bse fusion complexed with gdp.alf4-

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