Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2534c_(efp)_2858737_2859300
DateWed Aug 7 12:50:17 BST 2019
Unique Job IDdd173f7f3c5263d8
SequenceVATTADFKNG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.852 Y:64.611 Z:62.170
Model (left) based on template c3oyyA_
Top template information
PDB header:translation
Chain: A: PDB Molecule:elongation factor p;
PDBTitle: structure of pseudomonas aeruginosa elongation factor p
Confidence and coverage
Confidence:100.0% Coverage: 97%
182 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3oyyA_



100.0 34
PDB header:translation
Chain: A: PDB Molecule:elongation factor p;
PDBTitle: structure of pseudomonas aeruginosa elongation factor p
2c1uebB_



100.0 44
PDB header:rna binding protein
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8
3c5j3bB_



100.0 43
PDB header:translation
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: structure of translation elongation factor p from acinetobacter2 baumannii
4c1ybyB_



100.0 51
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor p;
PDBTitle: conserved hypothetical protein cth-95 from clostridium thermocellum
5c3a5zD_



100.0 43
PDB header:ligase
Chain: D: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
6c3treA_



100.0 38
PDB header:translation
Chain: A: PDB Molecule:elongation factor p;
PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii
7c1iz6B_



100.0 22
PDB header:biosynthetic protein
Chain: B: PDB Molecule:initiation factor 5a;
PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii
8c1bkbA_



100.0 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 5a;
PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum
9c2eifA_



100.0 26
PDB header:gene regulation
Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a);
PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii
10c3hksB_



100.0 17
PDB header:translation, rna binding protein
Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2;
PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana
11c3er0A_



100.0 20
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2;
PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae
12c5hy6A_



100.0 16
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a;
PDBTitle: spodoptera frugiperda eukaryotic translation initiation factor eif5a
13c1xtdA_



99.9 21
PDB header:translation
Chain: A: PDB Molecule:eukaryotic initiation factor 5a;
PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a
14c3cpfB_



99.9 16
PDB header:cell cycle
Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1;
PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a
15d1ueba3



99.9 56
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
16d1ueba1



99.9 38
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
17c5wxkB_



99.9 25
PDB header:transferase
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: earp bound with domain i of ef-p
18d1ueba2



99.9 38
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
19c3a5zF_



99.8 40
PDB header:ligase
Chain: F: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
20c1khiA_



99.3 12
PDB header:structural protein
Chain: A: PDB Molecule:hex1;
PDBTitle: crystal structure of hex1
21d1bkba1



not modelled 99.0 26
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
22d1iz6a1



not modelled 99.0 25
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
23d2eifa1



not modelled 99.0 24
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
24d1x6oa1



not modelled 98.6 15
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
25d1khia1



not modelled 97.9 8
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
26d1bkba2



not modelled 97.7 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
27d1iz6a2



not modelled 97.5 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
28d2eifa2



not modelled 97.1 31
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
29d1yiva1



not modelled 66.7 14
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
30d1slqa_



not modelled 62.3 22
Fold:VP4 membrane interaction domain
Superfamily:VP4 membrane interaction domain
Family:VP4 membrane interaction domain
31d2hnxa1



not modelled 57.8 20
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
32d1ogya1



not modelled 56.9 32
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
33c3fp9E_



not modelled 52.8 36
PDB header:hydrolase
Chain: E: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis
34d1pmpa_



not modelled 51.9 14
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
35d1mdca_



not modelled 50.4 17
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
36d1g7na_



not modelled 49.7 23
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
37d1eu1a1



not modelled 48.0 33
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
38d1ftpa_



not modelled 48.0 18
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
39d1vlfm1



not modelled 48.0 24
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
40d1g8ka1



not modelled 47.5 29
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
41d1bwya_



not modelled 46.8 22
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
42d1dmra1



not modelled 46.2 33
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
43d2iv2x1



not modelled 44.9 29
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
44d1kqfa1



not modelled 42.5 33
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
45d1hmsa_



not modelled 38.5 25
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
46c3iyuY_



not modelled 38.5 19
PDB header:virus
Chain: Y: PDB Molecule:outer capsid protein vp4;
PDBTitle: atomic model of an infectious rotavirus particle
47d2jioa1



not modelled 37.9 24
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
48c3rswA_



not modelled 37.9 25
PDB header:chaperone
Chain: A: PDB Molecule:fatty acid-binding protein, heart;
PDBTitle: crystal structure of heart fatty acid binding protein (fabp3)
49c5t5iL_



not modelled 37.5 33
PDB header:oxidoreductase
Chain: L: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdd;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
50d1tmoa1



not modelled 37.4 29
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
51d1y5ia1



not modelled 37.3 24
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
52c2q9sA_



not modelled 36.5 22
PDB header:lipid binding protein
Chain: A: PDB Molecule:fatty acid-binding protein;
PDBTitle: linoleic acid bound to fatty acid binding protein 4
53c1tmoA_



not modelled 35.8 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:trimethylamine n-oxide reductase;
PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
54c2ki8A_



not modelled 35.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase,
PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
55d1fdqa_



not modelled 35.6 17
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
56c2z14A_



not modelled 34.5 24
PDB header:signaling protein
Chain: A: PDB Molecule:ef-hand domain-containing family member c2;
PDBTitle: crystal structure of the n-terminal duf1126 in human ef-2 hand domain containing 2 protein
57d1h0ha1



not modelled 34.1 29
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
58d2cqaa1



not modelled 33.0 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
59c2kxjA_



not modelled 30.4 14
PDB header:protein binding
Chain: A: PDB Molecule:ubx domain-containing protein 4;
PDBTitle: solution structure of ubx domain of human ubxd2 protein
60d1b56a_



not modelled 30.2 17
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
61d2pu9b1



not modelled 29.7 46
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain
62c5ch7E_



not modelled 29.7 24
PDB header:oxidoreductase
Chain: E: PDB Molecule:dmso reductase family type ii enzyme, molybdopterin
PDBTitle: crystal structure of the perchlorate reductase pcrab - phe164 gate2 switch intermediate - from azospira suillum ps
63c1h0hA_



not modelled 28.6 29
PDB header:electron transport
Chain: A: PDB Molecule:formate dehydrogenase subunit alpha;
PDBTitle: tungsten containing formate dehydrogenase from desulfovibrio gigas
64c2kcmA_



not modelled 28.4 24
PDB header:nucleic acid binding protein
Chain: A: PDB Molecule:cold shock domain family protein;
PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a.
65c1h5nC_



not modelled 28.0 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
66c5ounA_



not modelled 27.9 29
PDB header:hydrolase
Chain: A: PDB Molecule:ruvb-like protein 2;
PDBTitle: nmr solution structure of the external dii domain of rvb2 from2 saccharomyces cerevisiae
67d1ifca_



not modelled 27.0 20
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
68c5ggeA_



not modelled 25.7 14
PDB header:lipid binding protein
Chain: A: PDB Molecule:fatty acid bindin protein, isoform b;
PDBTitle: fatty acid-binding protein in brain tissue of drosophila melanogaster
69c1ogyA_



not modelled 25.4 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
70c1eu1A_



not modelled 24.5 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethyl sulfoxide reductase;
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
71d2cr5a1



not modelled 24.4 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
72c1g8jC_



not modelled 24.1 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
73c3hslX_



not modelled 24.0 18
PDB header:replication
Chain: X: PDB Molecule:orf59;
PDBTitle: the crystal structure of pf-8, the dna polymerase accessory subunit2 from kaposi's sarcoma-associated herpesvirus
74d1sa8a_



not modelled 23.8 20
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
75c3m9bK_



not modelled 23.6 35
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
76d1opaa_



not modelled 23.2 25
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
77c1vlfQ_



not modelled 21.5 24
PDB header:oxidoreductase
Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici complexed with inhibitor 1,2,4,5-3 tetrahydroxy-benzene
78c5bvtA_



not modelled 20.4 22
PDB header:lipid binding protein
Chain: A: PDB Molecule:epidermal fatty acid-binding protein;
PDBTitle: palmitate-bound pfabp5
79d2a0aa1



not modelled 20.1 11
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
80c2ivfA_



not modelled 20.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
81d1i42a_



not modelled 19.7 9
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
82d2gp4a1



not modelled 19.7 31
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
83d2piea1



not modelled 19.0 15
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
84d1ed7a_



not modelled 18.9 13
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
85c4aayE_



not modelled 18.3 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:aroa;
PDBTitle: crystal structure of the arsenite oxidase protein complex2 from rhizobium species strain nt-26
86c1kqgA_



not modelled 17.9 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit;
PDBTitle: formate dehydrogenase n from e. coli
87d2f9ha1



not modelled 17.7 30
Fold:PTSIIA/GutA-like
Superfamily:PTSIIA/GutA-like
Family:PTSIIA/GutA-like
88c1y5iA_



not modelled 17.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
89d1p6pa_



not modelled 16.9 7
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
90c5yyxA_



not modelled 16.5 7
PDB header:transferase
Chain: A: PDB Molecule:meiosis-specific serine/threonine-protein kinase mek1;
PDBTitle: crystal structure of the mek1 fha domain
91d1uhta_



not modelled 16.3 13
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
92c2wkdA_



not modelled 15.6 44
PDB header:dna binding protein
Chain: A: PDB Molecule:orf34p2;
PDBTitle: crystal structure of a double ile-to-met mutant of protein orf34 from2 lactococcus phage p2
93d2as0a1



not modelled 15.4 32
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical RNA methyltransferase domain (HRMD)
94d1vyfa_



not modelled 15.4 15
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
95c2iv2X_



not modelled 15.3 29
PDB header:oxidoreductase
Chain: X: PDB Molecule:formate dehydrogenase h;
PDBTitle: reinterpretation of reduced form of formate dehydrogenase h from e.2 coli
96d2ftba1



not modelled 15.1 10
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
97c3zv0D_



not modelled 15.0 15
PDB header:cell cycle
Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4;
PDBTitle: structure of the shq1p-cbf5p complex
98c6a8wA_



not modelled 15.0 11
PDB header:protein binding
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 64;
PDBTitle: crystal structure of the fha domain of far9
99c4ytlB_



not modelled 14.7 10
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow2-kow3 domain of transcription elongation factor2 spt5.

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