Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2536_(-)_2860462_2861154
DateWed Aug 7 12:50:17 BST 2019
Unique Job ID4108c18227a0d62f
SequenceMTNWMLRGLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.939 Y:52.023 Z:72.515
Model (left) based on template c6hwhb_
Top template information
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
Confidence and coverage
Confidence: 79.9% Coverage: 73%
167 residues ( 73% of your sequence) have been modelled with 79.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hwhb_
79.9 16
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
2c6ajjA_
66.5 10
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
3c3nd0A_
51.9 19
PDB header:transport protein
Chain: A: PDB Molecule:sll0855 protein;
PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter
4d1otsa_
47.2 20
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
5c4tkrB_
46.3 22
PDB header:membrane protein
Chain: B: PDB Molecule:thiamine transporter thia;
PDBTitle: native-sad phasing for thit from listeria monocytogenes serovar.
6d1iqva_
41.7 40
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
7c2zkqg_
41.6 35
PDB header:ribosomal protein/rna
Chain: G: PDB Molecule:rna helix;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
8c5xyiF_
36.1 40
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein s5-b, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
9c3izbF_
35.6 40
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
10c5khnB_
35.4 11
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
11c2xzmG_
34.0 40
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
12c3zey2_
33.1 33
PDB header:ribosome
Chain: 2: PDB Molecule:40s ribosomal protein s5, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
13c1s1hG_
30.1 40
PDB header:ribosome
Chain: G: PDB Molecule:40s ribosomal protein s5;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
14c1p58E_
30.0 22
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
15d1husa_
29.6 47
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
16d1rssa_
29.6 47
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
17d2qalg1
28.5 47
Fold:Ribosomal protein S7
Superfamily:Ribosomal protein S7
Family:Ribosomal protein S7
18c6coyB_
28.2 10
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, transmembrane domain
19c3gtyS_
27.2 33
PDB header:chaperone/ribosomal protein
Chain: S: PDB Molecule:30s ribosomal protein s7;
PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone
20c2ht2B_
26.6 20
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
21c3j6vG_
not modelled 26.4 40
PDB header:ribosome
Chain: G: PDB Molecule:28s ribosomal protein s7, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
22c2lowA_
not modelled 25.7 39
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
23c5wsnD_
not modelled 24.7 24
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: structure of japanese encephalitis virus
24c5o5jG_
not modelled 24.6 47
PDB header:ribosome
Chain: G: PDB Molecule:30s ribosomal protein s7;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
25c3bbnG_
not modelled 23.4 33
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
26c6rdr8_
not modelled 23.3 30
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1d,2 monomer-masked refinement
27c6rdi8_
not modelled 23.3 30
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1a,2 monomer-masked refinement
28c3j0xJ_
not modelled 22.7 47
PDB header:ribosome
Chain: J: PDB Molecule:30s ribosomal protein s7;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
29c6hhkB_
not modelled 22.6 14
PDB header:viral protein
Chain: B: PDB Molecule:gp105;
PDBTitle: structure of gp105 of listeria bacteriophage a511
30c1vs5G_
not modelled 21.8 47
PDB header:ribosome
Chain: G: PDB Molecule:30s ribosomal protein s7;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with the antibiotic kasugamyin at 3.5a resolution. this file3 contains the 30s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in remark 400.
31c5tr1A_
not modelled 20.8 10
PDB header:transport protein
Chain: A: PDB Molecule:chloride channel protein;
PDBTitle: cryo-electron microscopy structure of a bovine clc-k chloride channel,2 alternate (class 2) conformation
32c3j2pD_
not modelled 19.5 22
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
33c6hwhX_
not modelled 19.5 11
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
34d1kpla_
not modelled 19.0 20
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
35c2k9pA_
not modelled 17.5 33
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
36c6qvcB_
not modelled 17.5 10
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
37c2losA_
not modelled 15.6 24
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14c;
PDBTitle: backbone structure of human membrane protein tmem14c
38c2k9yB_
not modelled 14.7 15
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
39c6eyuA_
not modelled 14.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
40c2mpnA_
not modelled 14.2 23
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
41c2mpnB_
not modelled 14.2 23
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
42c3e37B_
not modelled 13.7 16
PDB header:transferase
Chain: B: PDB Molecule:protein farnesyltransferase subunit beta;
PDBTitle: protein farnesyltransferase complexed with bisubstrate2 ethylenediamine scaffold inhibitor 5
43c5ireD_
not modelled 13.5 22
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
44c1p58F_
not modelled 13.3 22
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
45c3dinD_
not modelled 13.3 18
PDB header:membrane protein, protein transport
Chain: D: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
46c6dmoA_
not modelled 13.1 11
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
47c6fosK_
not modelled 12.3 47
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit x;
PDBTitle: cyanidioschyzon merolae photosystem i
48c5z62N_
not modelled 11.8 28
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
49c2k9yA_
not modelled 11.3 16
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
50c5zghK_
not modelled 11.3 47
PDB header:photosynthesis
Chain: K: PDB Molecule:psak;
PDBTitle: cryo-em structure of the red algal psi-lhcr
51c3q7aB_
not modelled 10.6 19
PDB header:transferase/transferase inhibitor
Chain: B: PDB Molecule:farnesyltransferase beta subunit;
PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpp and l-778,123
52c4ydeB_
not modelled 10.2 22
PDB header:transferase
Chain: B: PDB Molecule:protein farnesyltransferase/geranylgeranyltransferase type-
PDBTitle: crystal structure of candida albicans protein farnesyltransferase2 binary complex with the isoprenoid farnesyldiphosphate
53c4px7A_
not modelled 9.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
54c6f46A_
not modelled 9.1 32
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
55c5n1cA_
not modelled 8.8 26
PDB header:dna binding protein
Chain: A: PDB Molecule:probable transcriptional regulatory protein;
PDBTitle: iodinated form of the mycobacterium tuberculosis repressor ethr2
56c3aygA_
not modelled 8.7 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
57c4cdiC_
not modelled 8.5 43
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: crystal structure of acrb-acrz complex
58c6igzL_
not modelled 8.5 36
PDB header:plant protein
Chain: L: PDB Molecule:psal;
PDBTitle: structure of psi-lhci
59d2soba_
not modelled 8.4 20
Fold:OB-fold
Superfamily:Staphylococcal nuclease
Family:Staphylococcal nuclease
60c4nj7P_
not modelled 8.2 19
PDB header:protein binding
Chain: P: PDB Molecule:auxin response factor 7;
PDBTitle: pb1 domain of atarf7 - semet derivative
61c4mbgB_
not modelled 8.0 27
PDB header:transferase
Chain: B: PDB Molecule:caax farnesyltransferase beta subunit ram1;
PDBTitle: crystal structure of aspergillus fumigatus protein farnesyltransferase2 binary complex with farnesyldiphosphate
62c6f0kD_
not modelled 7.8 19
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
63d2h6fb1
not modelled 7.7 15
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
64c4y7jE_
not modelled 6.9 16
PDB header:membrane protein,transport protein
Chain: E: PDB Molecule:large conductance mechanosensitive channel protein,
PDBTitle: structure of an archaeal mechanosensitive channel in expanded state
65c4cbfB_
not modelled 6.7 25
PDB header:virus
Chain: B: PDB Molecule:m protein;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus
66c5fruB_
not modelled 6.5 27
PDB header:transcription
Chain: B: PDB Molecule:positive phenol-degradative gene regulator;
PDBTitle: crystal structure of the phenol-responsive sensory domain2 of the transcription activator poxr
67d2osoa1
not modelled 6.4 33
Fold:Ligand-binding domain in the NO signalling and Golgi transport
Superfamily:Ligand-binding domain in the NO signalling and Golgi transport
Family:MJ1460-like
68c2v5iA_
not modelled 6.0 43
PDB header:viral protein
Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 tailspike;
PDBTitle: structure of the receptor-binding protein of bacteriophage det7: a2 podoviral tailspike in a myovirus
69c5kbhB_
not modelled 5.9 36
PDB header:transcription
Chain: B: PDB Molecule:mopr;
PDBTitle: crystal structure of the aromatic sensor domain of mopr in complex2 with 3-chloro-phenol
70c2j5dA_
not modelled 5.9 47
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting protein 3;
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid bicelles
71d1kf6c_
not modelled 5.4 16
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
72c3ofgA_
not modelled 5.1 11
PDB header:chaperone
Chain: A: PDB Molecule:boca/mesd chaperone for ywtd beta-propeller-egf protein 1;
PDBTitle: structured domain of caenorhabditis elegans bmy-1
73c4m0qB_
not modelled 5.1 26
PDB header:viral protein
Chain: B: PDB Molecule:membrane-associated protein vp24;
PDBTitle: ebola virus vp24 structure
74c1mowG_
not modelled 5.1 36
PDB header:hydrolase/dna
Chain: G: PDB Molecule:chimera of homing endonuclease i-dmoi and dna endonuclease
PDBTitle: e-drei

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Transmembrane helix prediction 

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