Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2540c_(aroF)_2863217_2864422
DateWed Aug 7 12:50:17 BST 2019
Unique Job IDa44a5184e6516579
SequenceVLRWITAGES ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.273 Y:76.409 Z:54.577
Model (left) based on template c1ztbA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 97%
388 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ztbA_



100.0 99
PDB header:ligase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis
2d1qxoa_



100.0 44
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
3d1um0a_



100.0 34
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
4d1q1la_



100.0 47
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
5c4lj2A_



100.0 37
PDB header:lyase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from acinetobacter baumannii2 at 3.15a resolution
6d1sq1a_



100.0 37
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
7d1r53a_



100.0 40
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
8c4ecdB_



100.0 62
PDB header:lyase
Chain: B: PDB Molecule:chorismate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of bifidobacterium longum2 chorismate synthase
9c5z9aB_



100.0 41
PDB header:lyase
Chain: B: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from pseudomonas aeruginosa
10c2k1hA_



78.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ser13;
PDBTitle: solution nmr structure of ser13 from staphylococcus epidermidis.2 northeast structural genomics consortium target ser13
11d2ffma1



75.6 9
Fold:Hypothetical protein SAV1430
Superfamily:Hypothetical protein SAV1430
Family:Hypothetical protein SAV1430
12c2ltmA_



72.6 30
PDB header:electron transport
Chain: A: PDB Molecule:nfu1 iron-sulfur cluster scaffold homolog, mitochondrial;
PDBTitle: solution nmr structure of nfu1 iron-sulfur cluster scaffold homolog2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr2876b
13d1ciya1



62.9 13
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
14c2ltlA_



56.2 30
PDB header:electron transport
Chain: A: PDB Molecule:nifu-like protein, mitochondrial;
PDBTitle: solution nmr structure of nifu-like protein from saccharomyces2 cerevisiae, northeast structural genomics consortium (nesg) target3 yr313a
15d1ji6a1



53.1 10
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
16c1m1gB_



52.9 19
PDB header:transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1)
17c4grdA_



46.9 29
PDB header:lyase,isomerase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from burkholderia cenocepacia j2315
18d1dlca1



43.1 10
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
19d1o4va_



38.5 20
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
20c2lhuA_



37.2 27
PDB header:structural protein
Chain: A: PDB Molecule:mybpc3 protein;
PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain
21c2c9kA_



not modelled 36.3 14
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry4aa;
PDBTitle: structure of the functional form of the mosquito-larvicidal2 cry4aa toxin from bacillus thuringiensis at 2.8 a3 resolution
22c3lp6D_



not modelled 36.0 24
PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
23c2xznF_



not modelled 33.3 13
PDB header:ribosome
Chain: F: PDB Molecule:eif1;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
24d1qcza_



not modelled 33.2 18
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
25c5mqfB_



not modelled 30.1 25
PDB header:splicing
Chain: B: PDB Molecule:116 kda u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
26c5z58C_



not modelled 27.5 25
PDB header:splicing
Chain: C: PDB Molecule:116 kda u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
27c5ganC_



not modelled 27.0 22
PDB header:transcription
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
28c4b4kK_



not modelled 26.9 21
PDB header:isomerase
Chain: K: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of bacillus anthracis pure
29c3r3sD_



not modelled 26.8 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase;
PDBTitle: structure of the ygha oxidoreductase from salmonella enterica
30c2kw0A_



not modelled 26.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
31c1ciyA_



not modelled 26.7 13
PDB header:toxin
Chain: A: PDB Molecule:cryia(a);
PDBTitle: insecticidal toxin: structure and channel formation
32c2a73B_



not modelled 26.6 9
PDB header:immune system
Chain: B: PDB Molecule:complement c3;
PDBTitle: human complement component c3
33c1dlcA_



not modelled 26.6 9
PDB header:toxin
Chain: A: PDB Molecule:delta-endotoxin cryiiia;
PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution
34c2hl7A_



not modelled 26.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
35d1xmpa_



not modelled 24.8 21
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
36c2b39B_



not modelled 24.1 5
PDB header:immune system
Chain: B: PDB Molecule:c3;
PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution
37c2ymyB_



not modelled 23.6 19
PDB header:apoptosis
Chain: B: PDB Molecule:ras association domain-containing protein 5;
PDBTitle: structure of the murine nore1-sarah domain
38c5lj3C_



not modelled 23.0 22
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
39c6g2jK_



not modelled 22.6 21
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4l;
PDBTitle: mouse mitochondrial complex i in the active state
40c3jb9B_



not modelled 21.4 25
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:pre-mrna-splicing factor cwf10;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
41c1w99A_



not modelled 20.3 17
PDB header:toxin
Chain: A: PDB Molecule:pesticidial crystal protein cry4ba;
PDBTitle: mosquito-larvicidal toxin cry4ba from bacillus thuringiensis ssp.2 israelensis
42c5hcdD_



not modelled 19.5 29
PDB header:immune system
Chain: D: PDB Molecule:rhipicephalus microplus raci2;
PDBTitle: ternary complex of human complement c5 with ornithodoros moubata omci2 and rhipicephalus microplus raci2
43c2yadA_



not modelled 19.3 33
PDB header:surfactant protein
Chain: A: PDB Molecule:surfactant protein c brichos domain;
PDBTitle: brichos domain of surfactant protein c precursor protein
44c3jcrB_



not modelled 18.0 25
PDB header:splicing
Chain: B: PDB Molecule:hsnu114;
PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
45c6ovbA_



not modelled 17.7 16
PDB header:toxin
Chain: A: PDB Molecule:active core crystal toxin protein 1d;
PDBTitle: crystal structure of a bacillus thuringiensis cry1da tryptic core2 variant
46c3trhI_



not modelled 17.3 23
PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
47c3zf7Z_



not modelled 17.1 22
PDB header:ribosome
Chain: Z: PDB Molecule:60s ribosomal protein l26, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
48c6dj6B_



not modelled 16.4 10
PDB header:transferase
Chain: B: PDB Molecule:fatty acid kinase (fak) b2 protein (spr1019);
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b2 protein loaded with cis-oleic acid to 1.9 angstrom3 resolution
49c3w66A_



not modelled 16.4 20
PDB header:metal transport
Chain: A: PDB Molecule:magnetosome protein mamm;
PDBTitle: mamm-ctd d249a and h285a
50c3ieeA_



not modelled 15.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of an alpha helical protein (bf3319) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution
51c5lc5K_



not modelled 15.2 19
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4l;
PDBTitle: structure of mammalian respiratory complex i, class2
52c5ldwK_



not modelled 15.2 19
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4l;
PDBTitle: structure of mammalian respiratory complex i, class1
53d1g9pa_



not modelled 15.0 57
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
54c1g9pA_



not modelled 15.0 57
PDB header:toxin
Chain: A: PDB Molecule:omega-atracotoxin-hv2a;
PDBTitle: solution structure of the insecticidal calcium channel2 blocker omega-atracotoxin-hv2a
55c2ejeA_



not modelled 14.8 50
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna
56c5iecA_



not modelled 14.1 29
PDB header:blood clotting
Chain: A: PDB Molecule:raci2;
PDBTitle: structural basis for therapeutic inhibition of complement c5
57c2k19A_



not modelled 14.0 10
PDB header:antimicrobial protein
Chain: A: PDB Molecule:putative piscicolin 126 immunity protein;
PDBTitle: nmr solution structure of pisi
58c2dn5A_



not modelled 13.5 17
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna
59c6owkA_



not modelled 13.2 10
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry1be, cry1k-like protein
PDBTitle: crystal structure of a bacillus thuringiensis cry1b.867 tryptic core2 variant
60c2dzrA_



not modelled 12.8 25
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna
61c4uysA_



not modelled 12.7 31
PDB header:cell adhesion
Chain: A: PDB Molecule:flocculation protein flo11;
PDBTitle: x-ray structure of the n-terminal domain of the flocculin2 flo11 from saccharomyces cerevisiae
62c4hhuA_



not modelled 12.6 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:or280;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or280.
63d1q60a_



not modelled 12.4 42
Fold:GTF2I-like repeat
Superfamily:GTF2I-like repeat
Family:GTF2I-like repeat
64c4moaA_



not modelled 12.2 17
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry4ba;
PDBTitle: crystal structure of cry4ba-r203q toxin
65c6r5kA_



not modelled 12.1 18
PDB header:rna binding protein
Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
66c2d99A_



not modelled 12.1 25
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-048, a gtf2i domain in human2 cdna
67c2yadE_



not modelled 11.9 40
PDB header:surfactant protein
Chain: E: PDB Molecule:surfactant protein c brichos domain;
PDBTitle: brichos domain of surfactant protein c precursor protein
68c2dn4A_



not modelled 11.8 33
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna
69c2diuA_



not modelled 11.8 20
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0430 protein;
PDBTitle: solution structure of the rrm domain of kiaa0430 protein
70d1kkma_



not modelled 11.3 16
Fold:PEP carboxykinase-like
Superfamily:PEP carboxykinase-like
Family:HPr kinase HprK C-terminal domain
71c5zi1A_



not modelled 10.9 25
PDB header:toxin
Chain: A: PDB Molecule:insecticidal crystal protein cry7cal;
PDBTitle: crystal structure of bacillus thuringiensis insecticidal crystal2 protein cry7ca1 (wild type)
72c2e3lA_



not modelled 10.8 42
PDB header:transcription
Chain: A: PDB Molecule:transcription factor gtf2ird2 beta;
PDBTitle: solution structure of rsgi ruh-068, a gtf2i domain in human2 cdna
73c2ed2A_



not modelled 10.7 25
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i;
PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna
74c3b8hA_



not modelled 10.7 40
PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
75c4qjty_



not modelled 10.7 20
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: crystal structure of elongation factor 4 (ef4/lepa) bound to the2 thermus thermophilus 70s ribosome, 30s subunit of the 70s ribosome
76c2dzqA_



not modelled 10.5 25
PDB header:transcription
Chain: A: PDB Molecule:general transcription factor ii-i repeat domain-
PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna
77c3mcaB_



not modelled 9.9 22
PDB header:translation regulation/hydrolase
Chain: B: PDB Molecule:protein dom34;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
78c1ji6A_



not modelled 9.6 10
PDB header:toxin
Chain: A: PDB Molecule:pesticidial crystal protein cry3bb;
PDBTitle: crystal structure of the insecticidal bacterial del endotoxin cry3bb12 bacillus thuringiensis
79c4wsbC_



not modelled 9.5 22
PDB header:transferase/rna
Chain: C: PDB Molecule:polymerase pb2;
PDBTitle: bat influenza a polymerase with bound vrna promoter
80c4rmxC_



not modelled 9.4 25
PDB header:hydrolase
Chain: C: PDB Molecule:phi92_gp150;
PDBTitle: apo crystal structure of the colanidase tailspike protein gp150 of2 phage phi92
81c5fn2B_



not modelled 9.3 26
PDB header:hydrolase
Chain: B: PDB Molecule:presenilin-1;
PDBTitle: cryo-em structure of gamma secretase in complex with a drug dapt
82c2ywxA_



not modelled 9.3 26
PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii
83c4yjwA_



not modelled 9.0 21
PDB header:structural genomics unknown function
Chain: A: PDB Molecule:duf3829 family protein;
PDBTitle: crystal structure of a duf3829 family protein (bvu_3067) from2 bacteroides vulgatus atcc 8482 at 1.80 a resolution
84c6o55B_



not modelled 8.8 23
PDB header:isomerase
Chain: B: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 (pure) from legionella pneumophila
85c4hb9A_



not modelled 8.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:similarities with probable monooxygenase;
PDBTitle: crystal structure of a putative fad containing monooxygenase from2 photorhabdus luminescens subsp. laumondii tto1 (target psi-012791)
86d2do3a1



not modelled 8.7 35
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
87d1pzxa_



not modelled 8.4 10
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
88c4x9xA_



not modelled 8.4 18
PDB header:transferase
Chain: A: PDB Molecule:degv domain-containing protein mw1315;
PDBTitle: biochemical roles for conserved residues in the bacterial fatty acid2 binding protein family
89c2e85B_



not modelled 8.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
90d1nz9a_



not modelled 8.2 41
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
91c2qmhK_



not modelled 8.0 16
PDB header:transferase
Chain: K: PDB Molecule:hpr kinase/phosphorylase;
PDBTitle: structure of v267f mutant hprk/p
92c3izq1_



not modelled 7.9 33
PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
93c3j38z_



not modelled 7.9 40
PDB header:ribosome
Chain: Z: PDB Molecule:40s ribosomal protein s25;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
94c2dt8A_



not modelled 7.8 10
PDB header:lipid binding protein
Chain: A: PDB Molecule:degv family protein;
PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus
95c4kd6A_



not modelled 7.8 15
PDB header:isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a enoyl-coa hydratase/isomerase from burkholderia2 graminis c4d1m
96c5ttxB_



not modelled 7.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 2 maturation peptidase;
PDBTitle: crystal structure of hydrogenase 2 maturation peptidase from2 thaumarchaeota archaeon scgc_ab-539-e09
97c3qxiA_



not modelled 7.8 17
PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase echa1;
PDBTitle: crystal structure of enoyl-coa hydratase echa1 from mycobacterium2 marinum
98c4ytlB_



not modelled 7.7 35
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow2-kow3 domain of transcription elongation factor2 spt5.
99c3pl5A_



not modelled 7.7 10
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: fatty acid binding protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite