Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2543_(lppA)_2866478_2867137
DateWed Aug 7 12:50:17 BST 2019
Unique Job ID7695d1bf881299e3
SequenceVIAPQPISRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.449 Y:39.974 Z:36.166
Model (left) based on template c2v7sA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 77%
169 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2v7sA_



100.0 99
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
2c6h3uA_



33.1 23
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: schmallenberg virus glycoprotein gc head domain in complex with scfv2 4b6
3c6bs7A_



33.0 21
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from legionella2 pneumophila philadelphia 1
4d1dj2a_



32.0 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
5c3r7tA_



29.4 15
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni
6c6h3xA_



28.7 27
PDB header:viral protein
Chain: A: PDB Molecule:polyprotein;
PDBTitle: oropouche virus glycoprotein gc head domain
7c4ps2A_



27.8 16
PDB header:contractile protein
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: structure of the c-terminal fragment (87-165) of e.coli eaec tssb2 molecule
8c5civA_



27.3 14
PDB header:unknown function
Chain: A: PDB Molecule:sibling bacteriocin;
PDBTitle: sibling lethal factor precursor - dfsb
9d2oqea2



26.7 24
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
10c5i34B_



26.6 26
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: adenylosuccinate synthetase from cryptococcus neoformans complexed2 with gdp and imp
11d1qf5a_



26.5 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
12c6h3wA_



25.6 9
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: la crosse virus glycoprotein gc head domain
13c1iweB_



25.6 15
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: imp complex of the recombinant mouse-muscle adenylosuccinate2 synthetase
14c1wd6B_



25.5 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydhr;
PDBTitle: crystal structure of jw1657 from escherichia coli
15d1nvmb2



25.5 24
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
16d1iwea_



25.4 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
17c5lnk2_



24.6 23
PDB header:oxidoreductase
Chain: 2: PDB Molecule:mitochondrial complex i, 24 kda subunit;
PDBTitle: entire ovine respiratory complex i
18d1dj3a_



24.6 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
19c3k6gA_



24.5 28
PDB header:protein binding
Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1;
PDBTitle: crystal structure of rap1 and trf2 complex
20c3ls1A_



24.0 18
PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
21d2pv4a1



not modelled 23.0 39
Fold:Sama2622-like
Superfamily:Sama2622-like
Family:Sama2622-like
22d1jl3a_



not modelled 23.0 17
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
23c6h3sA_



not modelled 23.0 23
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: schmallenberg virus glycoprotein gc head/stalk domains
24d1p9ba_



not modelled 22.7 24
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
25c4jn6B_



not modelled 20.7 29
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase;
PDBTitle: crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
26c4clvB_



not modelled 19.7 20
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
27c2mt3A_



not modelled 18.5 22
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: structure of -24 dna binding domain of sigma 54 from e.coli
28c4m0gB_



not modelled 18.3 26
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: the crystal structure of an adenylosuccinate synthetase from bacillus2 anthracis str. ames ancestor.
29c1nvmB_



not modelled 17.5 25
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating);
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
30d1xbpg2



not modelled 17.0 53
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
31c2o8kA_



not modelled 17.0 24
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
32c4dknB_



not modelled 16.7 39
PDB header:fluorescent protein
Chain: B: PDB Molecule:amphioxus green fluorescent protein, gfpa1;
PDBTitle: crystal structure of amphioxus green fluorescent protein, gfpa1
33c4fgiH_



not modelled 16.6 32
PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:tsi1;
PDBTitle: structure of the effector - immunity system tse1 / tsi1 from2 pseudomonas aeruginosa
34c4f6oA_



not modelled 16.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase-1;
PDBTitle: crystal structure of the yeast metacaspase yca1
35d2gycg2



not modelled 15.3 41
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
36d2csga1



not modelled 15.0 17
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:YbiU-like
37c6h3vA_



not modelled 14.9 18
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: bunyamwera virus glycoprotein gc head domain
38c2wylF_



not modelled 14.7 12
PDB header:hydrolase
Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag;
PDBTitle: apo structure of a metallo-b-lactamase
39c3vpjF_



not modelled 14.6 32
PDB header:hydrolase/hydrolase inhibitor
Chain: F: PDB Molecule:tse1-specific immunity protein;
PDBTitle: crystal structure of type vi effector tse1 from pseudomonas aeruginosa2 in complex with immune protein tsi1
40c4xhpA_



not modelled 14.4 29
PDB header:structural protein
Chain: A: PDB Molecule:parm hybrid fusion protein;
PDBTitle: bacillus thuringiensis parm hybrid protein with adp, containing two2 parm mutants
41c5xf9E_



not modelled 13.6 17
PDB header:oxidoreductase
Chain: E: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
42d2zjrp1



not modelled 13.2 22
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
43c2ahqA_



not modelled 12.9 18
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
44c3uoaB_



not modelled 12.6 44
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation
PDBTitle: crystal structure of the malt1 paracaspase (p21 form)
45d1d6za2



not modelled 12.2 18
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
46d1w2za2



not modelled 11.9 13
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
47c5y00A_



not modelled 11.9 27
PDB header:fluorescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: acid-tolerant monomeric gfp, gamillus, fluorescence (on) state
48c5todD_



not modelled 11.7 17
PDB header:lipid transport
Chain: D: PDB Molecule:transmembrane protein 24;
PDBTitle: transmembrane protein 24 smp domain
49c4dkmH_



not modelled 11.0 39
PDB header:fluorescent protein
Chain: H: PDB Molecule:amphioxus green fluorescent protein, gfpc1a;
PDBTitle: crystal structure of amphioxus gfpc1a
50d2fug21



not modelled 10.9 23
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:NQO2-like
51c5z43A_



not modelled 10.8 16
PDB header:transferase
Chain: A: PDB Molecule:ambp1;
PDBTitle: crystal structure of prenyltransferase ambp1 apo structure
52d1mmsa2



not modelled 10.8 53
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
53d1w6ga2



not modelled 10.6 13
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
54c4ce4W_



not modelled 10.6 15
PDB header:ribosome
Chain: W: PDB Molecule:mrpl22;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
55c3ue9A_



not modelled 10.5 12
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis
56c5ltrA_



not modelled 10.2 24
PDB header:fluorescent protein
Chain: A: PDB Molecule:mneongreen;
PDBTitle: structure of the yellow-green fluorescent protein mneongreen from2 branchiostoma lanceolatum at the near physiological ph 8.0
57c5cqvB_



not modelled 9.9 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein q8dwv2 from streptococcus2 agalactiae
58c5mmi7_



not modelled 9.6 50
PDB header:ribosome
Chain: 7: PDB Molecule:50s ribosomal protein 6, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
59d1o57a1



not modelled 9.6 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of Bacillus PurR
60c5mlc8_



not modelled 9.4 50
PDB header:ribosome
Chain: 8: PDB Molecule:psrp6, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
61c4v19W_



not modelled 9.4 15
PDB header:ribosome
Chain: W: PDB Molecule:mitoribosomal protein ul22m, mrpl22;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
62c2n99A_



not modelled 9.2 27
PDB header:neuropeptide
Chain: A: PDB Molecule:ly-6/neurotoxin-like protein 1;
PDBTitle: solution structure of the slurp-2, a secreted isoform of lynx1
63c5od4A_



not modelled 9.1 50
PDB header:unknown function
Chain: A: PDB Molecule:secreted in xylem 3;
PDBTitle: avr2 effector protein from the fungal plant pathogen fusarium2 oxysporum
64c2yufA_



not modelled 8.9 42
PDB header:transcription
Chain: A: PDB Molecule:ngfi-a-binding protein 1;
PDBTitle: solution structure of the ncd2 domain in human2 transcriptional repressor nab1 protein
65c2vdcF_



not modelled 8.9 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
66c1lm1A_



not modelled 8.8 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
67c6bwqB_



not modelled 8.4 23
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
68c3bijC_



not modelled 8.4 18
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein gsu0716;
PDBTitle: crystal structure of protein gsu0716 from geobacter sulfurreducens.2 northeast structural genomics target gsr13
69c4ee7A_



not modelled 8.4 16
PDB header:transferase
Chain: A: PDB Molecule:prenyltransferase;
PDBTitle: crystal structure of the novel phenazine prenyltransferase epzp in2 complex with s-thiolodiphosphate (methylated)
70c5l7uB_



not modelled 8.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bvgh123 with bound galnac
71d3c9ua1



not modelled 8.2 8
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
72c3vtiD_



not modelled 8.2 23
PDB header:transferase
Chain: D: PDB Molecule:hydrogenase maturation factor;
PDBTitle: crystal structure of hype-hypf complex
73c1pbyA_



not modelled 8.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda subunit;
PDBTitle: structure of the phenylhydrazine adduct of the quinohemoprotein amine2 dehydrogenase from paracoccus denitrificans at 1.7 a resolution
74c4mjgB_



not modelled 7.8 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf4853 family protein (actodo_00621) from2 actinomyces odontolyticus atcc 17982 at 2.65 a resolution
75d2rm0w1



not modelled 7.8 10
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
76c5mlcU_



not modelled 7.6 17
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l22, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
77c1vw4O_



not modelled 7.6 12
PDB header:ribosome
Chain: O: PDB Molecule:54s ribosomal protein l22, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
78c3a9rA_



not modelled 7.6 43
PDB header:isomerase
Chain: A: PDB Molecule:d-arabinose isomerase;
PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
79d3cjsb1



not modelled 7.6 53
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
80c4jeoB_



not modelled 7.4 44
PDB header:fluorescent protein
Chain: B: PDB Molecule:red fluorescent protein blfp-r5;
PDBTitle: crystal structure of red fluorescent protein lanrfpdam exposed to2 prolonged x-ray irradiation
81d1m1la_



not modelled 7.3 40
Fold:Suppressor of Fused, N-terminal domain
Superfamily:Suppressor of Fused, N-terminal domain
Family:Suppressor of Fused, N-terminal domain
82c4n4qD_



not modelled 7.3 13
PDB header:lyase
Chain: D: PDB Molecule:acylneuraminate lyase;
PDBTitle: crystal structure of n-acetylneuraminate lyase from mycoplasma2 synoviae, crystal form ii
83c4a8xB_



not modelled 7.3 33
PDB header:transcription
Chain: B: PDB Molecule:hook-like, isoform a;
PDBTitle: structure of the core asap complex
84c5wuqD_



not modelled 7.1 3
PDB header:metal binding protein
Chain: D: PDB Molecule:anti-sigma-w factor rsiw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, a zinc2 binding form
85d1flca2



not modelled 7.1 32
Fold:Flavodoxin-like
Superfamily:SGNH hydrolase
Family:Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1
86d1hw8a2



not modelled 7.1 15
Fold:Substrate-binding domain of HMG-CoA reductase
Superfamily:Substrate-binding domain of HMG-CoA reductase
Family:Substrate-binding domain of HMG-CoA reductase
87c6g90Q_



not modelled 7.1 30
PDB header:splicing
Chain: Q: PDB Molecule:cold sensitive u2 snrna suppressor 1;
PDBTitle: prespliceosome structure provides insight into spliceosome assembly2 and regulation (map a2)
88c6gioB_



not modelled 7.1 9
PDB header:isomerase
Chain: B: PDB Molecule:amino acid amide racemase;
PDBTitle: structure of amino acid amide racemase from ochrobactrum anthropi
89c2zauB_



not modelled 7.1 8
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
90c5l9wA_



not modelled 7.0 11
PDB header:ligase
Chain: A: PDB Molecule:acetophenone carboxylase delta subunit;
PDBTitle: crystal structure of the apc core complex
91d2a21a1



not modelled 7.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
92c2lkyA_



not modelled 6.9 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
93d1pu1a_



not modelled 6.9 11
Fold:Hypothetical protein MTH677
Superfamily:Hypothetical protein MTH677
Family:Hypothetical protein MTH677
94d1fuia1



not modelled 6.9 39
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:FucI/AraA C-terminal domain-like
Family:L-fucose isomerase, C-terminal domain
95c4ffcD_



not modelled 6.9 13
PDB header:transferase
Chain: D: PDB Molecule:4-aminobutyrate aminotransferase (gabt);
PDBTitle: crystal structure of a 4-aminobutyrate aminotransferase (gabt) from2 mycobacterium abscessus
96c1jmxA_



not modelled 6.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:amine dehydrogenase;
PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
97d2fh1a2



not modelled 6.6 32
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
98c6gh5M_



not modelled 6.4 22
PDB header:transcription
Chain: M: PDB Molecule:rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: cryo-em structure of bacterial rna polymerase-sigma54 holoenzyme2 transcription open complex
99d1d0na5



not modelled 6.4 32
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like

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