Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2544_(lppB)_2867134_2867796
DateWed Aug 7 12:50:18 BST 2019
Unique Job IDd683bfd05a77c1b3
SequenceLIAPQPIPRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:66.449 Y:42.105 Z:37.424
Model (left) based on template c2v7sA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 77%
169 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2v7sA_



100.0 85
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
2d1mp9a1



37.7 20
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
3c1wd6B_



36.8 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydhr;
PDBTitle: crystal structure of jw1657 from escherichia coli
4c6bs7A_



31.2 22
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from legionella2 pneumophila philadelphia 1
5d1dj2a_



31.2 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
6c3r7tA_



27.3 22
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni
7c2yufA_



26.0 39
PDB header:transcription
Chain: A: PDB Molecule:ngfi-a-binding protein 1;
PDBTitle: solution structure of the ncd2 domain in human2 transcriptional repressor nab1 protein
8c6h3uA_



25.4 23
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: schmallenberg virus glycoprotein gc head domain in complex with scfv2 4b6
9d1nvmb2



25.3 24
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
10c5i34B_



24.9 33
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: adenylosuccinate synthetase from cryptococcus neoformans complexed2 with gdp and imp
11d1qf5a_



24.7 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
12d1ulva1



24.6 18
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
13c1iweB_



24.6 22
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: imp complex of the recombinant mouse-muscle adenylosuccinate2 synthetase
14d1iwea_



24.2 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
15c4xhiB_



24.1 18
PDB header:transcription
Chain: B: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of native thosea asigna virus rna-dependent rna2 polymerase (rdrp) at 2.15 angstrom resolution
16d1dj3a_



23.7 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
17d1qnaa1



23.4 19
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
18d1aisa1



22.2 22
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
19c4ps2A_



22.0 19
PDB header:contractile protein
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: structure of the c-terminal fragment (87-165) of e.coli eaec tssb2 molecule
20d1jl3a_



21.6 17
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
21c2wylF_



not modelled 21.6 12
PDB header:hydrolase
Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag;
PDBTitle: apo structure of a metallo-b-lactamase
22d2oqea2



not modelled 21.5 23
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
23d1p9ba_



not modelled 21.2 30
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
24c6h3xA_



not modelled 20.7 27
PDB header:viral protein
Chain: A: PDB Molecule:polyprotein;
PDBTitle: oropouche virus glycoprotein gc head domain
25c4jn6B_



not modelled 20.4 29
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase;
PDBTitle: crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
26d2hiqa1



not modelled 18.9 17
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Hypothetical protein YdhR
27c3k6gA_



not modelled 18.4 28
PDB header:protein binding
Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1;
PDBTitle: crystal structure of rap1 and trf2 complex
28c6h3wA_



not modelled 18.3 9
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: la crosse virus glycoprotein gc head domain
29c6h3sA_



not modelled 18.3 23
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: schmallenberg virus glycoprotein gc head/stalk domains
30c4n6cB_



not modelled 18.0 6
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the b1rzq2 protein from streptococcus pneumoniae.2 northeast structural genomics consortium (nesg) target spr36.
31c4m0gB_



not modelled 17.7 30
PDB header:ligase
Chain: B: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: the crystal structure of an adenylosuccinate synthetase from bacillus2 anthracis str. ames ancestor.
32c4f6oA_



not modelled 17.2 22
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase-1;
PDBTitle: crystal structure of the yeast metacaspase yca1
33d1nh2a1



not modelled 17.2 18
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
34d1i7aa_



not modelled 17.1 24
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
35c4dknB_



not modelled 16.6 39
PDB header:fluorescent protein
Chain: B: PDB Molecule:amphioxus green fluorescent protein, gfpa1;
PDBTitle: crystal structure of amphioxus green fluorescent protein, gfpa1
36d1qnaa2



not modelled 15.7 13
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
37c2mt3A_



not modelled 15.7 22
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: structure of -24 dna binding domain of sigma 54 from e.coli
38c4clvB_



not modelled 15.0 19
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
39c2ahqA_



not modelled 14.4 22
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
40c3uoaB_



not modelled 14.3 36
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation
PDBTitle: crystal structure of the malt1 paracaspase (p21 form)
41d1mp9a2



not modelled 14.0 12
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
42d1cdwa1



not modelled 14.0 18
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
43c3ls1A_



not modelled 13.6 18
PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
44c2o8kA_



not modelled 13.0 22
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
45d1kgda_



not modelled 12.9 10
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
46d1xbpg2



not modelled 12.8 53
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
47c4mjgB_



not modelled 12.6 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf4853 family protein (actodo_00621) from2 actinomyces odontolyticus atcc 17982 at 2.65 a resolution
48d2gycg2



not modelled 11.8 41
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
49c1nvmB_



not modelled 11.5 25
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating);
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
50d1nh2a2



not modelled 11.3 15
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
51c3bijC_



not modelled 11.3 18
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein gsu0716;
PDBTitle: crystal structure of protein gsu0716 from geobacter sulfurreducens.2 northeast structural genomics target gsr13
52d1cdwa2



not modelled 11.0 15
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
53d1fnna1



not modelled 10.9 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
54c5ltrA_



not modelled 10.7 24
PDB header:fluorescent protein
Chain: A: PDB Molecule:mneongreen;
PDBTitle: structure of the yellow-green fluorescent protein mneongreen from2 branchiostoma lanceolatum at the near physiological ph 8.0
55c4xhpA_



not modelled 10.7 29
PDB header:structural protein
Chain: A: PDB Molecule:parm hybrid fusion protein;
PDBTitle: bacillus thuringiensis parm hybrid protein with adp, containing two2 parm mutants
56c4dkmH_



not modelled 10.5 39
PDB header:fluorescent protein
Chain: H: PDB Molecule:amphioxus green fluorescent protein, gfpc1a;
PDBTitle: crystal structure of amphioxus gfpc1a
57d1lf6a1



not modelled 10.3 10
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
58c6h3vA_



not modelled 10.3 18
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: bunyamwera virus glycoprotein gc head domain
59c2vdcF_



not modelled 10.0 26
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
60c5lnk2_



not modelled 10.0 23
PDB header:oxidoreductase
Chain: 2: PDB Molecule:mitochondrial complex i, 24 kda subunit;
PDBTitle: entire ovine respiratory complex i
61c1lm1A_



not modelled 9.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
62d1aisa2



not modelled 9.5 23
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
63c5civA_



not modelled 9.4 8
PDB header:unknown function
Chain: A: PDB Molecule:sibling bacteriocin;
PDBTitle: sibling lethal factor precursor - dfsb
64c3ue9A_



not modelled 9.2 15
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis
65c3v4oA_



not modelled 9.2 36
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation
PDBTitle: human malt1 (caspase domain) in complex with an irreversible peptidic2 inhibitor
66c4yk3B_



not modelled 9.1 20
PDB header:protein binding
Chain: B: PDB Molecule:bepe protein;
PDBTitle: crystal structure of the bid domain of bepe from bartonella henselae
67c5itgA_



not modelled 9.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:sorbitol dehydrogenase;
PDBTitle: crystal structure of d-sorbitol dehydrogenase in substrate-free form
68d1ofda2



not modelled 9.1 22
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
69d1smya1



not modelled 8.9 36
Fold:DCoH-like
Superfamily:RBP11-like subunits of RNA polymerase
Family:RNA polymerase alpha subunit dimerisation domain
70d1d6za2



not modelled 8.6 18
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
71d1ea0a2



not modelled 8.6 26
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
72d1w2za2



not modelled 8.5 13
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
73c5cogB_



not modelled 8.3 8
PDB header:unknown function
Chain: B: PDB Molecule:irc4;
PDBTitle: crystal structure of yeast irc4
74d1ynja1



not modelled 8.3 32
Fold:DCoH-like
Superfamily:RBP11-like subunits of RNA polymerase
Family:RNA polymerase alpha subunit dimerisation domain
75c2jp3A_



not modelled 8.0 36
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
76d1mmsa2



not modelled 7.9 53
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
77d2i8da1



not modelled 7.5 10
Fold:Secretion chaperone-like
Superfamily:YdhG-like
Family:YdhG-like
78d2pv4a1



not modelled 7.4 32
Fold:Sama2622-like
Superfamily:Sama2622-like
Family:Sama2622-like
79c5y00A_



not modelled 7.4 27
PDB header:fluorescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: acid-tolerant monomeric gfp, gamillus, fluorescence (on) state
80d1w27a_



not modelled 7.4 25
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
81c4ffcD_



not modelled 7.2 13
PDB header:transferase
Chain: D: PDB Molecule:4-aminobutyrate aminotransferase (gabt);
PDBTitle: crystal structure of a 4-aminobutyrate aminotransferase (gabt) from2 mycobacterium abscessus
82c3o6xC_



not modelled 7.2 17
PDB header:ligase
Chain: C: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis
83c5xf9E_



not modelled 7.1 17
PDB header:oxidoreductase
Chain: E: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
84c4jeoB_



not modelled 7.0 44
PDB header:fluorescent protein
Chain: B: PDB Molecule:red fluorescent protein blfp-r5;
PDBTitle: crystal structure of red fluorescent protein lanrfpdam exposed to2 prolonged x-ray irradiation
85c4a8xB_



not modelled 7.0 33
PDB header:transcription
Chain: B: PDB Molecule:hook-like, isoform a;
PDBTitle: structure of the core asap complex
86c5cqvB_



not modelled 7.0 6
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein q8dwv2 from streptococcus2 agalactiae
87c1vqzA_



not modelled 6.7 22
PDB header:ligase
Chain: A: PDB Molecule:lipoate-protein ligase, putative;
PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution
88c4fk9A_



not modelled 6.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose-binding family ii;
PDBTitle: high resolution structure of the catalytic domain of mannanase2 sacte_2347 from streptomyces sp. sirexaa-e
89d1ddwa_



not modelled 6.5 20
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
90c2mbgA_



not modelled 6.3 26
PDB header:protein binding
Chain: A: PDB Molecule:rala-binding protein 1;
PDBTitle: rlip76 (gap-gbd)
91d1w6ga2



not modelled 6.2 13
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
92c5mmi7_



not modelled 6.2 50
PDB header:ribosome
Chain: 7: PDB Molecule:50s ribosomal protein 6, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
93c4yk1A_



not modelled 6.2 9
PDB header:protein binding
Chain: A: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep6 from bartonella rochalimae
94c3n2xB_



not modelled 6.1 17
PDB header:lyase
Chain: B: PDB Molecule:uncharacterized protein yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate
95c4afpA_



not modelled 6.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase mca2;
PDBTitle: the structure of metacaspase 2 from t. brucei determined in the2 presence of samarium
96c4i7vD_



not modelled 6.0 14
PDB header:biosynthetic protein
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: agrobacterium tumefaciens dhdps with pyruvate
97c6ht4A_



not modelled 6.0 60
PDB header:unknown function
Chain: A: PDB Molecule:ns5a;
PDBTitle: nmr structure of ns5a-d2 (jfh1) peptide (304-323)
98c4omhA_



not modelled 5.9 28
PDB header:lyase
Chain: A: PDB Molecule:geranylgeranyl diphosphate cyclase;
PDBTitle: crystal structure of the bacterial diterpene cyclase cotb2 variant2 f149l
99c5hopA_



not modelled 5.9 11
PDB header:hydrolase
Chain: A: PDB Molecule:lmo0182 protein;
PDBTitle: 1.65 angstrom resolution crystal structure of lmo0182 (residues 1-245)2 from listeria monocytogenes egd-e

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